Interactive effects of drought and N fertilization on the spatial distribution of methane assimilation in grassland soils

Soil methanotrophic bacteria constitute the only globally relevant biological sink for atmospheric methane (CH₄). Nitrogen (N) fertilizers as well as soil moisture regime affect the activity of these organisms, but the mechanisms involved are not well understood to date. In particular, virtually nothing is known about the spatial distribution of soil methanotrophs within soil structure and how this regulates CH₄ fluxes at the ecosystem scale. We studied the spatial distribution of CH₄ assimilation and its response to a factorial drought × N fertilizer treatment in a 3‐year experiment replicated in two grasslands differing in management intensity. Intact soil cores were labelled with ¹⁴CH₄ and methanotrophic activity mapped at a resolution of ～100 μm using an autoradiographic technique. Under drought, the main zone of CH₄ assimilation shifted down the soil profile. Ammonium nitrate (NH₄NO₃) and cattle urine reduced CH₄ assimilation in the top soil, but only when applied under drought, presumably because NH₄⁺ from fertilizers was not removed by plant uptake and nitrification under these conditions. Ecosystem‐level CH₄ fluxes measured in the field did show no or only very small inhibitory effects, suggesting that deeper soil layers fully compensated for the reduction in top soil CH₄ assimilation. Our results indicate that the ecosystem‐level CH₄ sink cannot be inferred from measurements of soil samples that do not reflect the spatial organization of soils (e.g. stratification of organisms, processes, and mechanisms). The autoradiographic technique we have developed is suited to study methanotrophic activity in a relevant spatial context and does not rely on the genetic identity of the soil bacterial communities involved, thus ideally complementing DNA‐based approaches.     

Inferring the history of speciation in house mice from autosomal,X‐linked,Y‐linked and mitochondrial genes

Patterns of genetic differentiation among taxa at early stages of divergence provide an opportunity to make inferences about the history of speciation. Here, we conduct a survey of DNA‐sequence polymorphism and divergence at loci on the autosomes, X chromosome, Y chromosome and mitochondrial DNA in samples of Mus domesticus, M. musculus and M. castaneus. We analyzed our data under a divergence with gene flow model and estimate that the effective population size of M. castaneus is 200 000–400 000, of M. domesticus is 100 000–200 000 and of M. musculus is 60 000–120 000. These data also suggest that these species started to diverge approximately 500 000 years ago. Consistent with this recent divergence, we observed considerable variation in the genealogical patterns among loci. For some loci, all alleles within each species formed a monophyletic group, while at other loci, species were intermingled on the phylogeny of alleles. This intermingling probably reflects both incomplete lineage sorting and gene flow after divergence. Likelihood ratio tests rejected a strict allopatric model with no gene flow in comparisons between each pair of species. Gene flow was asymmetric: no gene flow was detected into M. domesticus, while significant gene flow was detected into both M. castaneus and M. musculus. Finally, most of the gene flow occurred at autosomal loci, resulting in a significantly higher ratio of fixed differences to polymorphisms at the X and Y chromosomes relative to autosomes in some comparisons, or just the X chromosome in others, emphasizing the important role of the sex chromosomes in general and the X chromosome in particular in speciation.     

Trophic fractionation of carbon and nitrogen stable isotopes in Chironomus riparius reared on food of aquatic and terrestrial origin

1. Trophic fractionation was studied in short‐term laboratory feeding experiments with larvae of the deposit‐feeding midge Chironomus riparius. Larvae were fed food of terrestrial (oats, peat) and aquatic origin (Spirulina, Tetraphyll^®). 2. By analysing both whole larvae and isolated gut contents we were able to distinguish between the isotopic signature of recently ingested food and that of assimilated carbon and nitrogen in body tissue. Additionally we studied the effects of microbial conditioning, i.e. the colonisation and growth on food particles of microbes, on the isotopic signal of food resources. 3. Nitrogen fractionation for the different food types ranged from 0.67‰ to 2.68‰ between consumer and diet and showed that isotopic fractionation can be much lower than the value of 3.4‰ that is commonly assumed. 4. Microbial degradation of food particles resulted in an approximate doubling of the δ¹⁵N in 8 days, from 6.24 ± 0.05‰ to 11.36 ± 0.56‰. Values for δ¹³C increased only marginally, from ?20.66 ± 0.11‰ to ?20.34 ± 0.12‰. These results show that microbial conditioning of food may affect dietary isotope signatures (in particular N) and, unless accounted for, could introduce an error in measures of trophic fractionation. Microbial conditioning could well account for some of the variation in fractionation reported in the literature.     

Responses of microbial phototrophs to late‐Holocene environmental forcing of lakes in south‐west Greenland

1. The biological structure of arctic lakes is changing rapidly, apparently in response to global change processes such as increasing air temperatures, although altered nutrient stoichiometry may also be an important driver. Equally important, however, are local factors (e.g. landscape setting, hydrological linkages and trophic interactions) that may mediate responses of individual lakes at the regional scale. Despite general acknowledgement of the importance of local factors, there has been little focus on among‐lake variability in the response to environmental change. 2. Sedimentary pigments, organic carbon and nitrogen, and biogenic silica (BSi) in ²¹⁰Pb and ¹⁴C‐dated sediment cores from three contrasting lakes in the Kangerlussuaq area (c. 67°N, 51°W) of south‐west Greenland were used to reconstruct algal and phototrophic bacterial ecological change during the late‐Holocene. Water chemistry for the individual lakes varies in terms of conductivity (range: 30–3000 μS cm^?1) and stratification regimes (cold monomictic, dimictic and meromictic), linked with their position along the regional climate gradient from the coast and to the present ice sheet margin. 3. Despite essentially similar regional climate forcing over the last c. 1000 years, marked differences among lake types were observed in the phototrophic communities and their temporal variability. Considerable short‐term variability occurred in an oligosaline, meromictic lake (SS1371), dominated by purple sulphur bacterial pigments, most likely due to a tight coupling between the position of the chemocline and the phototrophic community. Communities in a lake (SS86) located on a nunatak, just beyond the edge of the present ice sheet shifted in a nonlinear pattern, approximately 1000 cal. years BP, possibly due to lake‐level lowering and loss of outflow during the Medieval Climate Anomaly. This regime shift was marked by a substantial expansion of green sulphur bacteria. 4. A dilute, freshwater coastal lake (SS49) dominated by benthic algae was relatively stable until ca. 1900 AD when rates of community change began to increase. These changes in benthic algal pigments are correlated with substantial declines (1.3–0.44‰) in δ¹⁵N that are indicative of increased deposition of atmospheric inputs of industrially derived NOx into the atmosphere. 5. Climate control on lake ecosystem functioning has been assumed to be particularly important in the Arctic. This study, however, illustrates a complex spatial response to climate forcing at the regional scale and emphasises differences in the relative importance of changes in the mass (m, both precipitation and nutrients) and energy flux (E) to lakes for the phototrophic community structure of low‐arctic Greenland lakes.