Karyological studies in Sonchus section Muritimi (Asteraceae) from the Iberian Peninsula

MEJÍAS, J. A. & VALDÉS, B., 1988. Karyologiepl studies in Sonchus section Madtimi (Asteraceae) from the Iberian Peninmula. Karyological data support the distinction of S. aquatilis Pourret and S. maritimus L. at the specific level. Karyological data and hybridization experiments support the idea that S. × novocaslcllanus Cirujano has been produced by the hybridization of S. crassifolius Pourret ex Willd. and S. maritimus L.     

Are badgers ‘Under The Weather’? Direct and indirect impacts of climate variation on European badger (Meles meles) population dynamics

Weather conditions, and how they in turn define and characterize regional climatic conditions, are a primary limit on global species diversity and distribution, and increasing variability in global and regional climates have significant implications for species and habitat conservation. A Capture–Mark–Recapture study revealed that badger (Meles meles) life history parameters interact in complicated ways with annual variability in the seasonality of temperature and rainfall, both in absolute and in phenological terms. A strong predictive relationship was observed between survival and both temperature and late‐summer rainfall. This link at the population dynamics level was related to individual body‐weight increases observed between summer and autumn. In addition, fecundity was correlated with spring rainfall and temperature. We investigated and confirmed that relationships were consistent with observed variation in the intensity of a parasitic infection. Finally, fecundity during any given year correlated with conditions in the preceding autumn. Badger survival also correlated with late winter weather conditions. This period is critical for badgers insofar as it coincides with their peak involvement in road traffic accidents (RTAs). RTA rate during this period was linked strongly to temperature, underlining the intricate ways in which a changing climate might interact with anthropogenic agents to influence species' population processes. Equinoctial conditions produced significant population driver effects. That is, while summers will always be relatively warm compared with winters, spring and autumn weather can be more variable and functionally delimit the ‘productive’ vs. nonproductive period of the year in terms of badger behavioural and physiological cycles. This study highlights how appropriately informed conservation strategies, mindful of trends in climatic conditions, will become ever‐more essential to ensure the survival of many species globally.     

The phylogenetic position of the heteropod Atlanta gaudichaudi Souleyet (Mollusca, Gastropoda), a spermatological investigation

The male adult, the spermatophore and the spermatozoa of Atlanta gaudichaudi are described. No parasperm are demonstrable. The ultrastructure of the spermatozoa is shown to differ fundamentally from that of the Archaeogastropoda and Neritopsina and to conform broadly with that of the Mesogastropoda (excepting Cyclophoracea, Viviparacea and Cerithacea), the Neogastropoda and the epitonacean heterogastropods. In having a nuclear fossa, containing the axoneme, which penetrates the entire length of the nucleus as the intranuclear canal, the spermatozoon especially resembles that of some members of the Rissoacea, Littorinacea, Eulimacea, Tonnacea, Volutacea and Conacea. Absence, in Atlanta of type 7 parasperm ( sensu Koike 1985), which characterize the Calyptraeacea, Cypraeacea, Tonnacea, Buccinacea, Volutacea (including the Mitracea) and most Conacea, or of type 8 parasperm of the Conidae, contraindicates heteropod relationship with these taxa. Relationship to the Rissoacea cannot be ruled out, though presence of oligopyrene, cusperm-like sperm in these (Bythiniidae) and pterotracheid heteropods is a questionable indication of affinity. Relationship of heteropods with the Littorinacea is suggested by similarity of the sperm, presence in carinariid heteropods and littorinids of nurse cells, and apparent homology of the male reproductive apparatus in both groups. The latter two similarities require confirmation, however. It is suggested that deposition of spermatophores on the exterior of the female in atlantid heteropods is a primitive mode of sperm transfer compatible with relationship with the Littorinacea.     

Microbe-associated molecular pattern (MAMP) signatures, synergy, size and charge: influences on perception or mobility and host defence responses

Triggering of defences by microbes has mainly been investigated using single elicitors or microbe-associated molecular patterns (MAMPs), but MAMPs are released in planta as complex mixtures together with endogenous oligogalacturonan (OGA) elicitor. We investigated the early responses in Arabidopsis of calcium influx and oxidative burst induced by non-saturating concentrations of bacterial MAMPs, used singly and in combination: flagellin peptide (flg22), elongation factor peptide (elf18), peptidoglycan (PGN) and component muropeptides, lipo-oligosaccharide (LOS) and core oligosaccharides. This revealed that some MAMPs have additive (e.g. flg22 with elf18) and even synergistic (flg22 and LOS) effects, whereas others mutually interfere (flg22 with OGA). OGA suppression of flg22-induced defences was not a result of the interference with the binding of flg22 to its receptor flagellin-sensitive 2 (FLS2). MAMPs induce different calcium influx signatures, but these are concentration dependent and unlikely to explain the differential induction of defence genes [pathogenesis-related gene 1 ( PR1 ), plant defensin gene 1.2 ( PDF1.2 ) and phenylalanine ammonia lyase gene 1 ( PAL1 )] by flg22, elf18 and OGA. The peptide MAMPs are potent elicitors at subnanomolar levels, whereas PGN and LOS at high concentrations induce low and late host responses. This difference might be a result of the restricted access by plant cell walls of MAMPs to their putative cellular receptors. flg22 is restricted by ionic effects, yet rapidly permeates a cell wall matrix, whereas LOS, which forms supramolecular aggregates, is severely constrained, presumably by molecular sieving. Thus, MAMPs can interact with each other, whether directly or indirectly, and with the host wall matrix. These phenomena, which have not been considered in detail previously, are likely to influence the speed, magnitude, versatility and composition of plant defences.     

Phototrophic Fe(II) oxidation in an atmosphere of H2: implications for Archean banded iron formations

The effect of hydrogen on the rate of phototrophic Fe(II) oxidation by two species of purple bacteria was measured at two different bicarbonate concentrations. Hydrogen slowed Fe(II) oxidation to varying degrees depending on the bicarbonate concentration, but even the slowest rate of Fe(II) oxidation remained on the same order of magnitude as that estimated to have been necessary to deposit the Hamersley banded iron formations. Given the hydrogen and bicarbonate concentrations inferred for the Archean, our data suggest that Fe(II) phototrophy could have been a viable process at this time.     

Targeting HER2: A report on the in vitro and in vivo pre-clinical data supporting trastuzumab as a radioimmunoconjugate for clinical trials

The potential of the HER2-targeting antibody trastuzumab as a radioimmunoconjugate useful for both imaging and therapy was investigated. Conjugation of trastuzumab with the acyclic bifunctional chelator CHX-A″-DTPA yielded a chelate:protein ratio of 3.4 ± 0.3; the immunoreactivity of the antibody unaffected. Radiolabeling was efficient, routinely yielding a product with high specific activity. Tumor targeting was evaluated in mice bearing subcutaneous (s.c.) xenografts of colorectal, pancreatic, ovarian and prostate carcinomas. High uptake of the radioimmunoconjugate, injected intravenously (i.v.), was observed in each of the models and the highest tumor %ID/g (51.18 ± 13.58) was obtained with the ovarian (SKOV-3) tumor xenograft. Specificity was demonstrated by the absence of uptake of ¹¹¹In-trastuzumab by melanoma (A375) s.c. xenografts and ¹¹¹In-HuIgG by s.c. LS-174T xenografts. Minimal uptake of i.v. injected ¹¹¹In-trastuzumab in normal organs was confirmed in non-tumor-bearing mice. The in vivo behavior of ¹¹¹In-trastuzumab in mice bearing intraperitoneal (i.p.) LS-174T tumors resulted in a tumor %ID/g of 130.85 ± 273.34 at 24 h. Visualization of tumor, s.c. and i.p. xenografts was achieved by γ-scintigraphy and PET imaging. Blood pool was evident as expected but cleared over time. The blood pharmacokinetics of i.v. and i.p. injected ¹¹¹In-trastuzumab was determined in mice with and without tumors. The data from these in vitro and in vivo studies supported advancement of radiolabeled trastuzumab into two clinical studies, a Phase 0 imaging study in the Molecular Imaging Program of the National Cancer Institute and a Phase 1 radioimmunotherapy study at the University of Alabama.Key words: monoclonal antibody, HER2, trastuzumab, radioimmunodiagnosis, radioimmunotherapy     

A high level interface to SCOP and ASTRAL implemented in Python

Background  

Benchmarking algorithms in structural bioinformatics often involves the construction of datasets of proteins with given sequence and structural properties. The SCOP database is a manually curated structural classification which groups together proteins on the basis of structural similarity. The ASTRAL compendium provides non redundant subsets of SCOP domains on the basis of sequence similarity such that no two domains in a given subset share more than a defined degree of sequence similarity. Taken together these two resources provide a 'ground truth' for assessing structural bioinformatics algorithms. We present a small and easy to use API written in python to enable construction of datasets from these resources.