Mini-exon Gene Sequences Define Six Groups within the Genus Crithidia

ABSTRACT. To develop molecular markers for lower trypanosmatids, we have examined the mini-exon gene repeats of 17 isolates that were classified as Crithidia by traditional methods. Representative repeats were amplified by polymerase chain reaction and the amplification products were cloned and used as hybridization probes against genomic DNA. Six hybridization groups of Crithidia were defined on the basis of the DNA blotting experiments. The three endosymbiont-bearing species ( C. deanei, C. desouzai and C. oncopelti ) and C. acanthocephali each belonged to single-member hybridization groups, while the C. fasciculata group contained additional named and undesignated species. The Crithidia lucilae thermophila probe hybridized to multiple undesignated isolates. The DNA sequence of the cloned products revealed that the specificity of the hybridization probes was due to substantial differences in the intron and the non-transcribed spacer regions. These data indicate substantial heterogeneity within the mini-exon gene locus of the taxon Crithidia .     

Isolation of polymorphic microsatellite markers in the sub‐Saharan tree,Acacia (Senegalia) mellifera (Fabaceae: Mimosoideae)

We isolated 11 polymorphic microsatellite markers from Acacia mellifera, a savannah woodland tree in sub‐Saharan Africa and southern Arabia. The loci were screened for polymorphism using 48 Kenyan individuals. Allelic diversity ranged from three to 19 per locus and the polymorphic information content varied from 0.287 to 0.893. These loci will be useful in studies of genetic structure, gene flow and breeding systems.     

Responses of macroinvertebrate communities to long‐term flow variability in a Sonoran Desert stream

Current global models predict a hotter and drier climate in the southwestern United States with anticipated increases in drought frequency and severity coupled with changes in flash flood regimes. Such changes would likely have important ecological consequences, particularly for stream and riparian ecosystems already subject to frequent hydrologic disturbance. This study assessed the potential response of aquatic macroinvertebrates to interannual variation in hydrology in a spatially intermittent desert stream (Sycamore Creek, AZ). We compiled data on the recovery of macroinvertebrate communities following spring floods, with successional sequences captured 11 times over a 16‐year period (1983–1999). This period encompassed a transition from perennial to intermittent flow in this system, and included a record drought in 1989–1990. Results show that while the size of floods initiating sequences had little explanatory power, changes in macroinvertebrate community structure during postflood succession were closely associated with antecedent flooding and drought. Year‐to‐year differences in benthic communities integrated taxon‐specific responses to antecedent disturbance, including differential resistance to channel drying, use of hyporheic refugia, and variable rates of recovery once stream flow resumed. The long‐term consequences of drying on community structure were only evident during later stages of postflood succession, illustrating an interaction between flood and drought recovery processes in this system. Our observations highlight the potential for predicted climate changes in this region to have marked and long‐lasting consequences for benthic communities in desert streams.     

Beyond aflatoxin: four distinct expression patterns and functional roles associated with Aspergillus flavus secondary metabolism gene clusters

Species of Aspergillus produce a diverse array of secondary metabolites, and recent genomic analysis has predicted that these species have the capacity to synthesize many more compounds. It has been possible to infer the presence of 55 gene clusters associated with secondary metabolism in Aspergillus flavus ; however, only three metabolic pathways—aflatoxin, cyclopiazonic acid (CPA) and aflatrem—have been assigned to these clusters. To gain an insight into the regulation of and to infer the ecological significance of the 55 secondary metabolite gene clusters predicted in A. flavus, we examined their expression over 28 diverse conditions. Variables included culture medium and temperature, fungal development, colonization of developing maize seeds and misexpression of laeA , a global regulator of secondary metabolism. Hierarchical clustering analysis of expression profiles allowed us to categorize the gene clusters into four distinct clades. Gene clusters for the production of aflatoxins, CPA and seven other unknown compound(s) were identified as belonging to one clade. To further explore the relationships found by gene expression analysis, aflatoxin and CPA production were quantified under five different cell culture environments known to be conducive or nonconducive for aflatoxin biosynthesis and during the colonization of developing maize seeds. Results from these studies showed that secondary metabolism gene clusters have distinctive gene expression profiles. Aflatoxin and CPA were found to have unique regulation, but are sufficiently similar that they would be expected to co-occur in substrates colonized with A. flavus .     

Temporal Hierarchies of Variation and the Maintenance of Diversity

Abstract A general model shows how the long-term growth rate of a population can be partitioned into components representing various mechanisms of maintenance of species diversity. One component summarises the effects of fluctuation-independent mechanisms, which include classical resource partitioning and frequency-dependent herbivory. Two other components represent fluctuation-dependent mechanisms, the storage effect and relative nonlinearity of competition.
The general model shows how a community will track an equilibrium set by fluctuation-independent mechanisms and the environmental state when community dynamics are faster than the rate of environmental change. Fluctuation-dependent mechanisms can be important for diversity maintenance with or without such tracking, but on long timescales their effects are indistinguishable from those of fluctuation-independent mechanisms.
These considerations lead to a hierarchical view of mechanisms of diversity maintenance where the effects of different timescales are partitioned or merged depending on the timescale of observation. These issues are illustrated with model examples involving various combinations of resource partitioning, fluctuations in recruitment rates, variation in the timing of germination, and seasonality. The very long timescales associated with climate change contain many complexities but nevertheless many ideas applicable to shorter timescales may be useful in a modified form.     

The upstream/downstream movement paradox of lotic invertebrates: quantitative evidence from a Welsh mountain stream

• 1 This study attempts to determine the mechanisms by which the downstream displacement of lotic invertebrates is compensated by the upstream movements of immatures and adults. To this end, submerged and aerial traps were set up at three sites, each 100 m apart on a small mountain stream (Yr Ogof) in North Wales and operated for 12 months.
• 2 At Site 1 (the source), 19.3% of the benthic invertebrates lost as drift were replaced by the upstream movement of aquatic stages. At Site 2, the average upstream compensation was 51.1% (although there was a marked difference between the two traps at the site). At downstream Site 3 the average compensation was 55.4%. The net loss of benthos downstream over 1 year was estimated to be 261920 individuals from Site 1, 41891 from Site 2, and 40470 from Site 3.
• 3 At Sites 1 and 2, the numbers of invertebrates drifting were positively correlated with both current speed and water depth. At Sites 2 and 3, the numbers moving upstream were positively correlated with water temperature. At all three sites, the numbers of animals drifting were positively correlated with the numbers moving upstream, under water.
• 4 In none of the eight common species of stoneffy did females show a strong overall upstream flight preference—however, two species, Leuctra nigra and Nemoura erratica, showed a significant downstream preference.
• 5 As with the stonefly nymphs, most of the caddisfly larvae showed a longitudinal distribution. Agapetus fuscipes larvae were most abundant at Site 1, yet females showed no preferred flight direction—this would seem to be inappropriate for maintaining this larval distribution pattern. However, females caught moving upstream at Site 2 were bigger and contained twice as many eggs, which were also larger, than females moving upstream at Site 1. The flight patterns of the other Trichoptera also seemed inappropriate for maintaining their respective larval distributions. Immature insects moved upstream at certain sites and times, but trends were not consistent. There was no correlation between female flight direction and local wind speed and direction.
• 6 Downstream displacement of the most abundant non-insect species, Gammarus pulex, was quite considerable at all three sites. However, at several times during the year the numbers moving upstream approached or exceeded those drifting. Maintenance of benthic population densities in this species is thought to be through a combination of upstream movement (which was highly correlated with benthic density at Sites 1 and 3) and production of young over a long (10 month) reproductive period. Maintenance of the benthic populations of the immature stages of the majority of insect species in Yr Ogof is thought to be through oviposition by females in the vicinity of their emergence sites.

     

Fine Structure of Sarcocystis cruzi Schizonts

SYNOPSIS Schizogony of Sarcocystis cruzi Hasselmann (syn. S. fusiformis Railliet) takes place in vascular endothelial cells 26 to 33 days after cattle ingest sporocysts from dogs. Kidney cortex from a heavily infected, dexamethasone-treated bovine was fixed for electron microscopy to determine the method of schizogonie development. Schizogony takes place by endopolygeny characterized by marked enlargement of the parasite nucleus, formation of nuclear lobes, presence of numerous spindles with adjacent pairs of centrioles along the nucleus, and simultaneous formation of daughter merozoites in the cytoplasm adjacent to the spindle poles. Endopolygeny in S. cruzi differs from that in other Sporozoa in that merozoite anlagen are seen in the cytoplasm before any nuclei divide. The resultant merozoites continue development and, when mature, resemble other sporozoan zoites. Upon release from the host cell into capillaries, they travel to muscle tissue to continue the life cycle by forming sarcocysts.