Immunocytochemical demonstration of human proinsulin chimeric polypeptide within cytoplasmic inclusion bodies of Escherichia coli

Immunocytochemical techniques were used to identify human proinsulin chimeric protein in cytoplasmic inclusion bodies of genetically modified Escherichia coli. Antibodies to proinsulin chimeric protein (human proinsulin coupled at its amino-terminus to a portion of the E. coli tryptophan E gene product) were localized in E. coli using post-embedding staining with protein A-peroxidase labelling for transmission electron microscopy. The observable distribution of the labelled antibody was limited to that portion of the E. coli cytoplasm occupied by inclusion bodies. The localization of human peptides as insoluble masses within the bacterial cytoplasm has important implications in relation to the synthesis, recovery and purification of pharmacologically useful substances produced through the application of recombinant DNA technology.     

Separation of biological macromolecules in vertical rotors using sucrose gradients shaped by a microprocessor-controlled gradient former

The separation of macromolecules in vertical rotors using linear or isokinetic sucrose gradients permits shorter centrifugation times and a higher sample capacity compared to swing-out rotors. In vertical rotors appropriate gradients give a resolution almost identical to that in swinging bucket rotors. This could be demonstrated for the isolation of polysomes and oligonucleosomes from rat liver. A microprocessor-controlled gradient former is presented which produces gradients of any desired shape. This device has been applied to prepare gradients with the desired linear or isokinetic shape after reorientation in the vertical tube during centrifugation.     

Hedgehog signaling stimulates Tenascin C to promote invasion of pancreatic ductal adenocarcinoma cells through Annexin A2

Pancreatic adenocarcinoma (PDA) is characterized by a dense desmoplastic reaction that comprises 60–90% of the tumor, while only 10–40% of the tumor is composed of malignant epithelial cells. This desmoplastic reaction is composed of stromal fibroblast cells, extracellular matrix proteins, and immune cells. Accumulating evidence has suggested that the stromal and epithelial cell compartments interact during the pathogenesis of this disease. Therefore, it is important to identify the signaling pathways responsible for this interaction to better understand the mechanisms by which PDA invades and metastasizes. Here, we show that secreted stromal factors induce invasion of PDA cells. Specifically, hedgehog signaling from the tumor cells induces tenascin C (TnC) secretion from the stromal cells that acts back upon the tumor cells in a paracrine fashion to induce the invasion of PDA cells through its' receptor annexin A2 (AnxA2). Therefore, blocking the interaction between TnC and AnxA2 has the potential to prevent liver metastasis in PDA.     

Solid phase synthesis and binding affinity of peptidyl transferase transition state mimics containing 2'-OH at P-site position A76

All living cells are dependent on ribosomes to catalyze the peptidyl transfer reaction, by which amino acids are assembled into proteins. The previously studied peptidyl transferase transition state analog CC-dA-phosphate-puromycin (CCdApPmn) has important differences from the transition state, yet current models of the ribosomal active site have been heavily influenced by the properties of this molecule. One significant difference is the substitution of deoxyadenosine for riboadenosine at A76, which mimics the 3′ end of a P-site tRNA. We have developed a solid phase synthetic approach to produce inhibitors that more closely match the transition state, including the critical P-site 2′-OH. Inclusion of the 2′-OH or an even bulkier OCH₃ group causes significant changes in binding affinity. We also investigated the effects of changing the A-site amino acid side chain from phenylalanine to alanine. These results indicate that the absence of the 2′-OH is likely to play a significant role in the binding and conformation of CCdApPmn in the ribosomal active site by eliminating steric clash between the 2′-OH and the tetrahedral phosphate oxygen. The conformation of the actual transition state must allow for the presence of the 2′-OH, and transition state mimics that include this critical hydroxyl group must bind in a different conformation from that seen in prior analog structures. These new inhibitors will provide valuable insights into the geometry and mechanism of the ribosomal active site.     

Proportional counter dosimetry and microdosimetry for radiotherapy with multiple pion beams

At the Swiss Institute for Nuclear Research (SIN) cancer patients are irradiated with negatively charged pi mesons using a 60-beam medical pion generator, the Piotron. A low-pressure tissue-equivalent proportional counter was used to measure absorbed dose and microdosimetric spectra. A method was developed to allow discrimination of events from different beam components, i.e., beam contamination (electrons and muons), pions in flight, and stopping pions. Measurements were performed along the axis and at lateral distances off one of these identical pion beams. The marked changes of total microdosimetric spectra with depth in phantom detected in earlier measurements are mainly due to large variations in the dose contributions of the beam components and much less to changes in the shapes of the individual microdosimetric spectra. The single beam measurements were used to calculate three-dimensional distributions of absorbed dose and of dose mean lineal energy, yD, for dynamic patient irradiations. Within the whole target volume yD remains nearly constant when irradiated with all 60 beams, whereas considerable changes were found for irradiations with 31 beams coming from a semicircle. Both size and shape of target volumes influence yD, the maximum values ranging from 30 to 45 keV/micron.     

Untersuchungen zum Stoffwechsel des Radium 224 (ThX) und Abschätzung der Strahlendosen bei therapeutischer Anwendung

Ohne ZusammenfassungHerrn Prof. Dr. Dr. h. c. H.Langendorff zum 65. Geburtstag gewidmet.     

Activity concentrations of222Rn,220Rn,and their decay products in german dwellings,dose calculations and estimate of risk

Summary Measurements of the concentrations of²²²Rn, its short-lived decay products and of²¹²Pb -²¹²Bi were performed in 150 dwellings and in the open air in the Federal Republic of Germany. The concentration of²²²Rn was measured by electrostatic deposition of²¹⁸Po. The concentrations of the short-lived decay products were measured by air sampling and alpha-spectroscopy. It was found that inside dwellings the average potential alpha-energy concentration of the short-lived daughters is about three times higher than in the open air. The total potential alpha-energy concentration indoors amounts to 2.6 · 10^–3 Working Level (W. L.). Direct measurements of the equilibrium factor inside dwellings gave a mean value of 0.3. A strong dependence of the potential alpha energy concentration on the ventilation rate in dwellings has been observed. These ventilation effects exceed the effects caused by differences in the activity concentrations due to different building materials.The dose calculation results in an average dose to the whole lung due to the inhalation of short-lived radon daughters of about 0.05–0.2 mGy/a. An estimate of risk - based on the risk factors for uranium miners - shows an average lifetime risk of about 6 · 10^–4 for the incidence of lung cancer caused by inhalation of radon and thoron daughters in dwellings in the Federal Republic of Germany.The research programme was supported by the Bundesminister des Innern of the Federal Republic of Germany     

Polyphenoloxidase Silencing Affects Latex Coagulation in Taraxacum Species

Latex is the milky sap that is found in many different plants. It is produced by specialized cells known as laticifers and can comprise a mixture of proteins, carbohydrates, oils, secondary metabolites, and rubber that may help to prevent herbivory and protect wound sites against infection. The wound-induced browning of latex suggests that it contains one or more phenol-oxidizing enzymes. Here, we present a comprehensive analysis of the major latex proteins from two dandelion species, Taraxacum officinale and Taraxacum kok-saghyz, and enzymatic studies showing that polyphenoloxidase (PPO) is responsible for latex browning. Electrophoretic analysis and amino-terminal sequencing of the most abundant proteins in the aqueous latex fraction revealed the presence of three PPO-related proteins generated by the proteolytic cleavage of a single precursor (pre-PPO). The laticifer-specific pre-PPO protein contains a transit peptide that can target reporter proteins into chloroplasts when constitutively expressed in dandelion protoplasts, perhaps indicating the presence of structures similar to plastids in laticifers, which lack genuine chloroplasts. Silencing the PPO gene by constitutive RNA interference in transgenic plants reduced PPO activity compared with wild-type controls, allowing T. kok-saghyz RNA interference lines to expel four to five times more latex than controls. Latex fluidity analysis in silenced plants showed a strong correlation between residual PPO activity and the coagulation rate, indicating that laticifer-specific PPO plays a major role in latex coagulation and wound sealing in dandelions. In contrast, very little PPO activity is found in the latex of the rubber tree Hevea brasiliensis, suggesting functional divergence of latex proteins during plant evolution.Latex is a milky sap produced by more than 12,500 plant species spanning 20 families (Metcalfe, 1966). It is often white or colorless but can range from yellow to scarlet (e.g. in some members of the poppy family [Papaveraceae]). Latex coagulates when exposed to air and consists of an emulsion of polymers and metabolites that are often bitter or toxic. Therefore, it is proposed that natural latex has a protective function, sealing wounds, acting as a barrier to microorganisms, and discouraging herbivory (El Moussaoui et al., 2001). In addition to a wide range of low-molecular-weight polypeptides (Nessler and Burnett, 1992; Azarkan et al., 2004), several other proteins and enzymes have been identified in the latices of laticiferous plants. These include the wound-induced proteins trypsin inhibitor, class II chitinase, and glutaminyl cyclase in the latex of papaya (Carica papaya; Azarkan et al., 2004) as well as chitinases and β-1,3-glucanase in the latex of the rubber tree Hevea brasiliensis (Martin, 1991; Subroto et al., 1996). The latex from some plants is a good source of natural rubber, and H. brasiliensis is widely cultivated for this purpose.Latex is produced in specialized cells known as laticifers, which arise in two distinct ways depending on the species (Evert, 2006). Articulated laticifers (found in the Papaveraceae, Asteraceae, and in H. brasiliensis) are organized in longitudinal chains originally laid down in the meristem, and the cell walls become perforated or completely degraded during development to form continuous channels called latex vessels. In contrast, nonarticulated laticifers (found in milkweeds [Asclepias spp.]) are organized in a branching system originating from a single precursor cell in the embryo that divides rapidly and spreads invasively during development. These are multinucleate cells that tend not to fuse into vessels (Serpe et al., 2002).Taraxacum officinale (common dandelion) and Taraxacum kok-saghyz (Russian dandelion) are members of the Asteraceae and therefore possess articulated laticifers (Esau, 1965; Evert, 2006) that secrete a latex rich in polyphenols (Schütz et al., 2005; C. Schulze Gronover, unpublished data). T. kok-saghyz latex is a good source of high-molecular-weight rubber (Mooibroek and Cornish, 2000; Bushman et al., 2006) and was investigated as an alternative to H. brasiliensis during World War II, when rubber supplies to Europe and the United States were interrupted. Unfortunately, the extraction of rubber from Russian dandelion latex is laborious and expensive because of rapid coagulation, and further development was abandoned when Hevea rubber became available. Coagulation of H. brasiliensis latex is caused by the major latex proteins (MLPs), which include hevein, the hevein receptor, and chitinase (Gidrol et al., 1994; Chrestin et al., 1997). A similar role has been proposed for the polyphenoloxidases (PPOs) present in the latex of certain Hevea spp. (Hanower and Brzozowska, 1977), although our data indicate that this is not the case.PPOs are found throughout the plant kingdom (Mayer and Harel, 1979; Vaughn and Duke, 1984; Mayer, 1987; Vaughn et al., 1988; Sherman et al., 1991), and they probably play a role in defense against pathogens and herbivores (Vörös et al., 1957; Felton et al., 1989; Duffey and Felton, 1991; Constabel and Ryan, 1998; Stout et al., 1999; Gatehouse, 2002). They are plastid-localized copper metalloenzymes that catalyze the oxidation of o-diphenols to o-diquinones (diphenolase activity; EC 1.10.3.2) and, in some species, also the o-hydroxylation of monophenols (monophenolase activity; EC 1.14.18.1; Vaughn et al., 1988; Mayer, 2006). Quinones are highly reactive electrophiles responsible for much of the oxidative browning in fruits and vegetables after wounding (Yoruk and Marshall, 2003). The wound-inducible expression of PPOs has been reported in apple (Malus domestica; Boss et al., 1995), tomato (Solanum lycopersicum; Constabel et al., 1995; Thipyapong and Steffens 1997), potato (Solanum tuberosum; Thipyapong et al., 1995), and hybrid poplar (Populus spp.; Constabel et al., 2000). In addition, the down-regulation of PPO activity by antisense RNA in tomato confers hypersusceptibility to pathogens (Thipyapong et al., 2004), whereas PPO overexpression confers enhanced resistance to bacterial diseases (Li and Steffens, 2002). It has also been suggested that PPOs evolved to protect plants against photochemical oxidation, since most PPOs characterized thus far appear to be localized in the plastids of photosynthetic cells (Sherman et al., 1995).The rapid wound-induced browning of dandelion latex suggests the presence of significant PPO activity in the laticifers. Here, we show that the PPO is the major component of the latex proteome in Taraxacum spp. and that the down-regulation of PPO activity by RNA interference (RNAi) in transgenic T. officinale and T. kok-saghyz plants inhibits browning and coagulation. This suggests that PPO may be a key factor controlling the coagulation of dandelion latex and thus its protective role. This contrasts to the situation in H. brasiliensis, where we show that PPO appears to have a negligible effect on latex coagulation.     

Profiling of phenolic glycosidic conjugates in leaves of Arabidopsis thaliana using LC/MS

Profiling of plant secondary metabolites is still a very difficult task. Liquid chromatography (LC) or capillary electrophoresis hyphenated with different kinds of detectors are methods of choice for analysis of polar, thermo labile compounds with high molecular masses. We demonstrate the applicability of LC combined with UV diode array or/and mass spectrometric detectors for the unambiguous identification and quantification of flavonoid conjugates isolated from Arabidopsis thaliana leaves of different genotypes and grown in different environmental conditions. During LC/UV/MS/MS analyses we were able to identify tetra-, tri-, and di-glycosides of kaempferol, quercetin and isorhamnetin. Based on our results we can conclude that due to the co-elution of different chemical compounds in reversed phase HPLC systems the application of UV detectors does not allow to precisely profile all flavonoid conjugates existing in A. thaliana genotypes. Using MS detection it was possible to unambiguously recognize the glycosylation patterns of the aglycones. However, from the mass spectra we could not conclude neither the anomeric form of the C-1 carbon atoms of sugar moieties in glycosidic bonds between sugars or sugar and aglycone nor the position of the second carbon involved in disaccharides. The applicability of collision induced dissociation techniques (CID MS/MS) for structural analyses of the studied group of plant secondary metabolites with two types of analyzers (triple quadrupole or ion trap) was demonstrated.     

Compliance Mixture Modelling with a Zero‐Effect Complier Class and Missing Data

Summary Randomized experiments are the gold standard for evaluating proposed treatments. The intent to treat estimand measures the effect of treatment assignment, but not the effect of treatment if subjects take treatments to which they are not assigned. The desire to estimate the efficacy of the treatment in this case has been the impetus for a substantial literature on compliance over the last 15 years. In papers dealing with this issue, it is typically assumed there are different types of subjects, for example, those who will follow treatment assignment (compliers), and those who will always take a particular treatment irrespective of treatment assignment. The estimands of primary interest are the complier proportion and the complier average treatment effect (CACE). To estimate CACE, researchers have used various methods, for example, instrumental variables and parametric mixture models, treating compliers as a single class. However, it is often unreasonable to believe all compliers will be affected. This article therefore treats compliers as a mixture of two types, those belonging to a zero‐effect class, others to an effect class. Second, in most experiments, some subjects drop out or simply do not report the value of the outcome variable, and the failure to take into account missing data can lead to biased estimates of treatment effects. Recent work on compliance in randomized experiments has addressed this issue by assuming missing data are missing at random or latently ignorable. We extend this work to the case where compliers are a mixture of types and also examine alternative types of nonignorable missing data assumptions.