Lipase in aqueous‐polar organic solvents: Activity,structure, and stability

Studying alterations in biophysical and biochemical behavior of enzymes in the presence of organic solvents and the underlying cause(s) has important implications in biotechnology. We investigated the effects of aqueous solutions of polar organic solvents on ester hydrolytic activity, structure and stability of a lipase. Relative activity of the lipase monotonically decreased with increasing concentration of acetone, acetonitrile, and DMF but increased at lower concentrations (upto ～20% v/v) of dimethylsulfoxide, isopropanol, and methanol. None of the organic solvents caused any appreciable structural change as evident from circular dichorism and NMR studies, thus do not support any significant role of enzyme denaturation in activity change. Change in 2D [15N, 1H]‐HSQC chemical shifts suggested that all the organic solvents preferentially localize to a hydrophobic patch in the active‐site vicinity and no chemical shift perturbation was observed for residues present in protein's core. This suggests that activity alteration might be directly linked to change in active site environment only. All organic solvents decreased the apparent binding of substrate to the enzyme (increased K_m); however significantly enhanced the k_cat. Melting temperature (T_m) of lipase, measured by circular dichroism and differential scanning calorimetry, altered in all solvents, albeit to a variable extent. Interestingly, although the effect of all organic solvents on various properties on lipase is qualitatively similar, our study suggest that magnitudes of effects do not appear to follow bulk solvent properties like polarity and the solvent effects are apparently dictated by specific and local interactions of solvent molecule(s) with the protein.     

Prostate cancer is known by the companionship with ATM and miRNA it keeps: craftsmen of translation have dual behaviour with tailors of life thread

Research on prostate cancer progression has focused extensively on the concept of miRNA, which can operate either as promoters or as suppressors of carcinogenesis. Moreover, recent genetic studies and emerging functional work show that strikingly similar and overlapping pathways are involved in prostate carcinogenesis. Unswervingly, these elements constitute a recently explored ‘network of networks’ that dynamically reorganizes during DNA damage and is responsible for positively or negatively regulating genome organization and integrity. We consider these facets of convergence and discuss how insights from diametrically opposed interactions of ataxia–telangiectasia mutated and mitrons can inform us about, and possibly help us to get a step closer to personalized medicine. Copyright © 2012 John Wiley & Sons, Ltd.     

Platelet‐derived growth factor (PDGF) signalling in cancer: rapidly emerging signalling landscape

Platelet‐derived growth factor (PDGF)‐mediated signalling has emerged as one of the most extensively and deeply studied biological mechanism reported to be involved in regulation of growth and survival of different cell types. However, overwhelmingly increasing scientific evidence is also emphasizing on dysregulation of spatio‐temporally controlled PDGF‐induced signalling as a basis for cancer development. We partition this multi‐component review into recently developing understanding of dysregulation PDGF signalling in different cancers, how PDGF receptors are quantitatively controlled by microRNAs. Moreover, we also summarize most recent advancements in therapeutic targeting of PDGFR as evidenced by preclinical studies. Better understanding of the PDGF‐induced intracellular signalling in different cancers will be helpful in catalysing the transition from a segmented view of cancer biology to a conceptual continuum.     

Biodiversity of epibenthic community in the inshore waters of southeast coast of India

The epifaunal assemblage was evaluated at three different depths (5, 15 and 25 m) in the inshore waters of Pazhayar, Parangipettai and Cuddalore apart from 5 m depth near SIPCOT covering totally 10 stations (11°21′ N to 11°42′ N; 79°46′49″ E to 79°52′34″ E) in the southeast coast of India, Bay of Bengal. The occurrence of as many as 112 species belonging to 6 groups was recorded. Among these, gastropods constituted the largest component (42.85%) with 48 species. Bivalves came next with the percentage contribution of 24.10% with 27 species. Crustaceans and polychaetes contributed with 16.96% (19 species) and 6.25% (7 species), respectively. Others contributed with 9.82% (11 species). The maximum number of species was recorded in Cuddalore transect (65 species) and the minimum in SIPCOT (20 species). The maximum abundance was recorded in SIPCOT (1363 ind./haul) but the diversity was found to be lower here than in the other stations. The bivalve, Scapharca inaequivalvis was abundant only in this station whereas the large sized polychaetes, Epidiopatra hupferiana monroi and Sternaspis scutata were found only in the Pazhayar transect during all the seasons. Multivariate analyses were done to define assemblages. The total number of species estimated by various extrapolators varied from 112 species to 169.73 species. The cluster analysis revealed the gradual change in species composition with increase in depth. In the principal coordinate analysis (PCO) the first two axes explained 49.8% of the total variability in the case of biota and 98.3% of the total variability in the case of environmental variables. The distance based linear model (DISTLM) was used to find out the relationship between the abundance of epifauna and environmental variables. Depth explained about 23.7% of the variability while temperature and pH explained 17.5 and 10.6%, respectively. The best solution suggested all the nine environmental variables to combinedly explain about 92.49% of the total variability     

Spawning behaviour of barred spiny eel,Macrognathus pancalus,in the River Gomti,India

The present study investigated the spawning behaviour of the spiny eel, Macrognathus pancalus, and its relationship with the environment (photoperiod and temperature). The results show that M. pancalus breeds during February to September with peak spawning during February/March and July/August, indicating two main breeding periods. Initiation of breeding occurs during increasing day lengths in early spring (February/March), and regression during decreasing day lengths in autumn (September/October). The breeding status confirmed by gonadosomatic index (GSI) and ovarian histology showed six stages of ovarian maturation (viz. stage I: chromatin nucleaolar; II: perinucleolar; III: cortical alveolar; IV: vitellogenesis; V: ripe; and VI: partially spent), with predominance of one or more stages at a particular time of the year. Males also followed a similar seasonal pattern in gonadal maturation as reflected by their GSI. Results show that M. pancalus is a seasonal breeder with bimodal spawning activity. The breeding pattern suggests an influence of prevailing day length conditions at this latitude.     

Molecular characterization and identification of plant growth promoting endophytic bacteria isolated from the root nodules of pea (Pisum sativum L.)

Root nodule accommodates various non-nodulating bacteria at varying densities. Present study was planned to identify and characterize the non-nodulating bacteria from the pea plant. Ten fast growing bacteria were isolated from the root nodules of cultivated pea plants. These bacterial isolates were unable to nodulate pea plants in nodulation assay, which indicate the non-rhizobial nature of these bacteria. Bacterial isolates were tested in vitro for plant growth promoting properties including indole acetic acid (IAA) production, nitrogen fixation, phosphate solubilization, root colonization and biofilm formation. Six isolates were able to produce IAA at varying level from 0.86 to 16.16 μg ml^?1, with the isolate MSP9 being most efficient. Only two isolates, MSP2 and MSP10, were able to fix nitrogen. All isolates were able to solubilize inorganic phosphorus ranging from 5.57 to 11.73 μg ml^?1, except MSP4. Bacterial isolates showed considerably better potential for colonization on pea roots. Isolates MSP9 and MSP10 were most efficient in biofilm formation on polyvinyl chloride, which indicated their potential to withstand various biotic and abiotic stresses, whereas the remaining isolates showed a very poor biofilm formation ability. The most efficient plant growth promoting agents, MSP9 and MSP10, were phylogenetically identified by 16S rRNA gene sequence analysis as Ochrobactrum and Enterobacter, respectively, with 99 % similarity. It is suggested the potential endophytic bacterial strains, Ochrobactrum sp. MSP9 and Enterobacter sp. MSP10, can be used as biofertilizers for various legume and non-legume crops after studying their interaction with the host crop and field evaluation.     

Production of oligosaccharides by glutaraldehyde treated and immobilized beta-galactosidases fromBacillus circulans

Summary The oligosaccharide-producing activity of beta-galactosidase (beta-D-galactoside galactohydrolase, EC 3.2.1. 23) preparation ofBacillus circulans was increased from 21% to 40% after glutaraldehyde treatment or immobilization onto porous silicagel(Merckogel) by crosslinkage with glutaraldehyde.     

Illness in childhood predicts face preferences in adulthood

The value of different mate choices may depend on the local pathogen ecology and on personal infection susceptibility: when there is a high risk of infection, choosing a healthy or immunocompetent mate may be particularly important. Frequency of childhood illness may act as a cue of the ecological and immunological factors relevant to mate preferences. Consistent with this proposal, we found that childhood illness – and frequency of diarrhea in particular – was positively correlated with preferences for exaggerated sex-typical characteristics in opposite-sex, but not same-sex, faces. Moreover, this relationship was stronger among individuals with poorer current health. These data suggest that childhood illness may play a role in calibrating adult mate preferences and have implications for theories of disease-avoidance psychology, life-history strategy and cross-cultural differences in mate preferences.