Herpes B Virus,Macacine Herpesvirus 1, Breaks Simplex Virus Tradition via Major Histocompatibility Complex Class I Expression in Cells from Human and Macaque Hosts

B virus of the family Herpesviridae is endemic to rhesus macaques but results in 80% fatality in untreated humans who are zoonotically infected. Downregulation of major histocompatibility complex (MHC) class I in order to evade CD8⁺ T-cell activation is characteristic of most herpesviruses. Here we examined the cell surface presence and total protein expression of MHC class I molecules in B virus-infected human foreskin fibroblast cells and macaque kidney epithelial cells in culture, which are representative of foreign and natural host initial target cells of B virus. Our results show <20% downregulation of surface MHC class I molecules in either type of host cells infected with B virus, which is statistically insignificantly different from that observed in uninfected cells. We also examined the surface expression of MHC class Ib molecules, HLA-E and HLA-G, involved in NK cell inhibition. Our results showed significant upregulation of HLA-E and HLA-G in host cells infected with B virus relative to the amounts observed in other herpesvirus-infected cells. These results suggest that B virus-infected cell surfaces maintain normal levels of MHC class Ia molecules, a finding unique among simplex viruses. This is a unique divergence in immune evasion for B virus, which, unlike human simplex viruses, does not inhibit the transport of peptides for loading onto MHC class Ia molecules because B virus ICP47 lacks a transporter-associated protein binding domain. The fact that MHC class Ib molecules were significantly upregulated has additional implications for host-pathogen interactions.     

Structure prediction and binding sites analysis of curcin protein of Jatropha curcas using computational approaches

Ribosome inactivating proteins (RIPs) are defense proteins in a number of higher-plant species that are directly targeted toward herbivores. Jatropha curcas is one of the biodiesel plants having RIPs. The Jatropha seed meal, after extraction of oil, is rich in curcin, a highly toxic RIP similar to ricin, which makes it unsuitable for animal feed. Although the toxicity of curcin is well documented in the literature, the detailed toxic properties and the 3D structure of curcin has not been determined by X-ray crystallography, NMR spectroscopy or any in silico techniques to date. In this pursuit, the structure of curcin was modeled by a composite approach of 3D structure prediction using threading and ab initio modeling. Assessment of model quality was assessed by methods which include Ramachandran plot analysis and Qmean score estimation. Further, we applied the protein-ligand docking approach to identify the r-RNA binding residue of curcin. The present work provides the first structural insight into the binding mode of r-RNA adenine to the curcin protein and forms the basis for designing future inhibitors of curcin. Cloning of a future peptide inhibitor within J. curcas can produce non-toxic varieties of J. curcas, which would make the seed-cake suitable as animal feed without curcin detoxification.     

Placenta Stem/Stromal Cell–Derived Extracellular Vesicles for Potential Use in Lung Repair

Many acute and chronic lung injuries are incurable and rank as the fourth leading cause of death globally. While stem cell treatment for lung injuries is a promising approach, there is growing evidence that the therapeutic efficacy of stem cells originates from secreted extracellular vesicles (EVs). Consequently, EVs are emerging as next‐generation therapeutics. While EVs are extensively researched for diagnostic applications, their therapeutic potential to promote tissue repair is not fully elucidated. By housing and delivering tissue‐repairing cargo, EVs refine the cellular microenvironment, modulate inflammation, and ultimately repair injury. Here, the potential use of EVs derived from two placental mesenchymal stem/stromal cell (MSC) lines is presented; a chorionic MSC line (CMSC29) and a decidual MSC cell line (DMSC23) for applications in lung diseases. Functional analyses using in vitro models of injury demonstrate that these EVs have a role in ameliorating injuries caused to lung cells. It is also shown that EVs promote repair of lung epithelial cells. This study is fundamental to advancing the field of EVs and to unlock the full potential of EVs in regenerative medicine.     

Size-Independent Differences between the Mean of Discrete Stochastic Systems and the Corresponding Continuous Deterministic Systems

In this paper, it is shown that for a class of reaction networks, the discrete stochastic nature of the reacting species and reactions results in qualitative and quantitative differences between the mean of exact stochastic simulations and the prediction of the corresponding deterministic system. The differences are independent of the number of molecules of each species in the system under consideration. These reaction networks are open systems of chemical reactions with no zero-order reaction rates. They are characterized by at least two stationary points, one of which is a nonzero stable point, and one unstable trivial solution (stability based on a linear stability analysis of the deterministic system). Starting from a nonzero initial condition, the deterministic system never reaches the zero stationary point due to its unstable nature. In contrast, the result presented here proves that this zero-state is a stable stationary state for the discrete stochastic system, and other finite states have zero probability of existence at large times. This result generalizes previous theoretical studies and simulations of specific systems and provides a theoretical basis for analyzing a class of systems that exhibit such inconsistent behavior. This result has implications in the simulation of infection, apoptosis, and population kinetics, as it can be shown that for certain models the stochastic simulations will always yield different predictions for the mean behavior than the deterministic simulations.     

Watson–Crick pairing,the Heisenberg group and Milnor invariants

We study the secondary structure of RNA determined by Watson–Crick pairing without pseudo-knots using Milnor invariants of links. We focus on the first non-trivial invariant, which we call the Heisenberg invariant. The Heisenberg invariant, which is an integer, can be interpreted in terms of the Heisenberg group as well as in terms of lattice paths. We show that the Heisenberg invariant gives a lower bound on the number of unpaired bases in an RNA secondary structure. We also show that the Heisenberg invariant can predict allosteric structures for RNA. Namely, if the Heisenberg invariant is large, then there are widely separated local maxima (i.e., allosteric structures) for the number of Watson–Crick pairs found. Partially supported by DST (under grant DSTO773) and UGC (under SAP-DSA Phase IV).     

Fatty acids in callus cultures: Stage of reversal in the proportion of unsaturated to saturated acids and of change in major components

The lipids of the cotyledon of Cucumis melo contain a large proportion of unsaturated fatty acids with linoleic acid as the major component, whereas those of cotyledon callus show a marked reduction in linoleic acid, an increase in linolenic acid and a predominance of palmitic acid which results in an increase in total saturated acids. The fatty acid compositions of total lipids in the cotyledons at different stages of seedling development, excised cotyledon tissue at different stages of callus initiation and in isolated callus show that the observed changes manifested in the established callus occur in the newly formed meristimatic cells as a result of the action of growth substances used for callus initiation.     

Fatty acids in callus cultures: Influence of growth factors on fatty acid composition of total lipids in callus cells

Callus tissues were derived from cotyledon segments of Cucumis melo and Cucumis sativus. Four combinations of growth factors, i.e., naphthalene acetic acid (NAA) plus coconut water (CW); NAA plus kinetin; NAA plus 6-benzylaminopurine (BAP) and indole 3-butyric acid plus BAP, were incorporated in the medium for callus initiation as well as for growth of excised callus in culture for six passages. The proportion of total saturated to unsaturated acids and the ratio of linoleic to linolenic acid was influenced by the change in the type of auxin and cytokinin in the combinations used. A many fold increase of myristic acid was recorded for the indole 3-butyric acid plus BAP combination.     

Studies on C17 brown mice subjected to photochemotherapeutic doses of long wave length ultraviolet (UVA) radiation

In this study the risk of photochemotherapeutic dose levels of long wave ultraviolet radiation (UVA) was assessed by employing a laboratory animal system, C17 brown mice. The experimental group was subjected to three UVA dose levels, 1000, 2000 and 3500 J/cm2. The dose regimen 50 J/cm2 per day for five days a week was completed in 4, 8 and 14 weeks respectively. The UVA exposed animals were examined until 52 weeks post UVA exposure periods for morphological lesions. Estimations of DNA, protein levels and dermal, epidermal thickness were made. There were no lesions observed with the highest UVA dose employed. Alterations in the DNA and protein levels in the skin of animals in the exposed groups were observed in the post UVA periods. A notable increase in the DNA level was observed 47 weeks post UVA period. The significance of alterations in DNA and protein levels needs to be studied further for evaluation of long term risk following UVA exposure. The data presented however led to a conclusion that the photochemotherapeutic doses of UVA do not pose any risk of cancer to pigmented mouse strains.     

Minireviews: Exploring the Basic Ecological Unit: Ecosystem-like Concepts in Traditional Societies

Ancient conceptualizations of ecosystems exist in several Amerindian, Asia-Pacific, European, and African cultures. The rediscovery by scientists of ecosystem-like concepts among traditional peoples has been important in the appreciation of traditional ecological knowledge among ecologists, anthropologists, and interdisciplinary scholars. Two key characteristics of these systems are that (a) the unit of nature is often defined in terms of a geographical boundary, such as a watershed, and (b) abiotic components, plants, animals, and humans within this unit are considered to be interlinked. Many traditional ecological knowledge systems are compatible with the emerging view of ecosystems as unpredictable and uncontrollable, and of ecosystem processes as nonlinear, multiequilibrium, and full of surprises. Traditional knowledge may complement scientific knowledge by providing practical experience in living within ecosystems and responding to ecosystem change. However, the “language” of traditional ecology is different from the scientific and usually includes metaphorical imagery and spiritual expression, signifying differences in context, motive, and conceptual underpinnings. Received 28 April 1998; accepted 9 July 1998.