Identification of a linear B-cell epitope on the Schistosoma japonicum saposin protein,SjSAP4: Potential as a component of a multi-epitope diagnostic assay

BackgroundSchistosoma japonicum is one of three major species of blood flukes causing schistosomiasis, a disease, which continues to be a major public health issue in the Philippines. SjSAP4, a member of a multigene family of saposin-like proteins, is a recognized immunodiagnostic biomarker for schistosomiasis japonica. This study aimed to identify linear B-cell epitopes on SjSAP4 and to validate their potential as components of a multi-epitope assay for the serological diagnosis of schistosomiasis japonica.MethodologySjSAP4-derived peptides were expressed as GST-peptide-fused proteins and these were Western blot probed with human serum samples from S. japonicum Kato-Katz (KK)-positive individuals and uninfected controls. A core epitope was further identified by Western blotting through probing a series of truncated peptides with the schistosomiasis patient sera. The diagnostic performance of the core epitope-containing peptides and the full-length SjSAP4 was evaluated by enzyme-linked immunosorbent assay (ELISA) using a panel of sera collected from subjects resident in a schistosomiasis-endemic area of the Philippines.Main findingsAs a result of the peptide mapping, one peptide (P15) was found to be highly immunogenic in the KK-positive individuals. We subsequently showed that -S¹⁶³QCSLVGDIFVDKYLD¹⁷⁸- is a core B-cell epitope of P15. Subsequent ELISAs incorporating SjSAP4, SjSAP4-Peptide and SjSP-13V2-Peptide showed a sensitivity of 94.0%, 46.0% and 74.0%, respectively, and a specificity of 97.1%, 100% and 100%, respectively. Notably, complementary recognition of the B-cell epitopes (SjSAP4-Peptide and SjSP-13V2-Peptide) was observed in a subset of the KK-positive individuals. A dual epitope-ELISA (SjSAP4-Peptide + SjSP-13V2-Peptide-ELISA) showed a diagnostic sensitivity of 84.0% and a specificity of 100%.Conclusions/SignificanceIn this study, -S¹⁶³QCSLVGDIFVDKYLD¹⁷⁸- was identified as a dominant linear B-cell epitope on SjSAP4. This peptide and the complementary recognition of other B-cell epitopes using sera from different KK-positive individuals can provide the basis of developing a multi-epitope assay for the serological diagnosis of schistosomiasis.     

ALKBH5/MAP3K8 axis regulates PD-L1+ macrophage infiltration and promotes hepatocellular carcinoma progression

Hepatocellular carcinoma is one of the most common malignant tumors.M6A is a novel epigenetic modification that have been emerged as vital regulators for the progression of HCC. However, the regulatory role, clinical significance and the details of the modification, such as the impact on the local tumor environment, remain largely unclear. Our study showed that ALKBH5 was highly expressed in HCC and high ALKBH5 expression predicted a worse prognosis of HCC patients. Prediction of ALKBH5 function by tissue samples and single cell sequencing Gene Set Variation Analysis. Primary CD3 + T lymphocytes and bone marrow-derived macrophages were used to evaluate the effect of ALKBH5 on immune microenvironment. The results indicated that ALKBH5 promote HCC cell proliferation, metastasis and PD-L1+macrophage recruitment. Mechanistically the results showed that ALKBH5 regulates MAP3K8 expression in a m6A dependent manner which mediates the proliferation and metastasis of HCC cells. ALKBH5 also promotes the activation of JNK and ERK pathways through upregulating MAP3K8, thus regulating the expression of IL-8 and promoting macrophage recruitment. Taken together, these data show that ALKBH5 promotes HCC growth, metastasis and macrophage recruitment through ALKBH5/MAP3K8 axis and it may serve as a potential diagnostic marker and target for treatment of HCC patients.     

西藏接合菌物种多样性初探

【背景】接合菌在自然界广泛分布,在工业、食品、医药、生物防治等方面扮演着重要的角色,部分接合菌为有害菌。西藏地区接合菌只有少数零星的报道,其系统调查研究几乎还是空白,大量潜在的物种需要分离、鉴定、认识、保藏和开发。【目的】了解西藏地区的接合菌物种多样性和生物资源现状,为该地区有害接合菌的控制和有益接合菌的开发利用奠定基础。【方法】对西藏全境7个地区19个代表县的701个样品采用平板稀释分离法得到单菌落,然后进行形态和分子(SSU、ITS和LSU r DNA)鉴定,并在此基础上进行生物多样性以及优势和稀有属种分析。【结果】得到西藏接合菌10属26种,包括5个西藏已知种和21个西藏新记录种;其中4个为中国新记录种,分别是:类变形被孢霉(Mortierella amoeboidea)、球孢高山被孢霉(M.globalpina)、灰褐毛霉(Mucor brunneogriseus)、暗色毛霉(M.fuscus)。西藏接合菌的多样性指数分析表明,不同地区间的物种数量和组成存在显著差异,排在前4位的分别是波密县、米林县、当雄县和八宿县。属种分析显示,西藏接合菌的2个优势属为被孢霉属(Mortierella)和毛霉属(Mucor);3个优势种为高山被孢霉(Mortierella alpina)、冻土毛霉(Mucor hiemalis)、匍枝根霉(Rhizopus stolonifer);常见属8个,分别是犁头霉属(Absidia)、放射毛霉属(Actinomucor)、小克银汉霉属(Cunninghamella)、根毛霉属(Rhizomucor)、根霉属(Rhizopus)、共头霉属(Syncephalastrum)、伞形霉属(Umbelopsis)和接霉属(Zygorhynchus);常见种9个,稀有种14个。【结论】西藏地区接合菌资源丰富,各地区生物多样性差异显著,稀有物种占一半以上的比例提示西藏自然环境保护的重要性。     

Interactions between EGFR and EphA2 promote tumorigenesis through the action of Ephexin1

The cell signaling factors EGFR, EphA2, and Ephexin1 are associated with lung and colorectal cancer and play an important role in tumorigenesis. Although the respective functional roles of EGFR and EphA2 are well known, interactions between these proteins and a functional role for the complex is not understood. Here, we showed that Ephexin1, EphA2, and EGFR are each expressed at higher levels in lung and colorectal cancer patient tissues, and binding of EGFR to EphA2 was associated with both increased tumor grade and metastatic cases in both cancer types. Treatment with Epidermal Growth Factor (EGF) induced binding of the RR domain of EGFR to the kinase domain of EphA2, and this binding was promoted by Ephexin1. Additionally, the AKT-mediated phosphorylation of EphA2 (at Ser897) promoted interactions with EGFR, pointing to the importance of this pathway. Two mutations in EGFR, L858R and T790M, that are frequently observed in lung cancer patients, promoted binding to EphA2, and this binding was dependent on Ephexin1. Our results indicate that the formation of a complex between EGFR, EphA2, and Ephexin1 plays an important role in lung and colorectal cancers, and that inhibition of this complex may be an effective target for cancer therapy.Subject terms: Oncogenes, Cancer models     

Hemin with Peroxidase Activity Can Inhibit the Oxidative Damage Induced by Ultraviolet A

Excessive reactive oxygen species (ROS), a highly reactive substance that contains oxygen, induced by ultraviolet A (UVA) cause oxidative damage to skin. We confirmed that hemin can catalyze the reaction of tyrosine (Tyr) and hydrogen peroxide (H₂O₂). Catalysis was found to effectively reduce or eliminate oxidative damage to cells induced by H₂O₂ or UVA. The scavenging effects of hemin for other free-radical ROS were also evaluated through pyrogallol autoxidation, 1,1-diphenyl-2-picrylhydrazyl radical (DPPH·)-scavenging assays, and phenanthroline–Fe²⁺ assays. The results show that a mixture of hemin and tyrosine exhibits strong scavenging activities for H₂O₂, superoxide anion (O₂⁻·), DPPH·, and the hydroxyl radical (·OH). Furthermore, the inhibition of oxidative damage to human skin keratinocyte (HaCaT) cells induced by H₂O₂ or UVA was evaluated. The results show that catalysis can significantly reduce the ratio of cell apoptosis and death and inhibit the release of lactate dehydrogenase (LDH), as well as accumulation of malondialdehyde (MDA). Furthermore, the resistance to apoptosis was found to be enhanced. These results show that the mixture of hemin and tyrosine has a significantly protective effect against oxidative damage to HaCaT cells caused by UVA, suggesting it as a protective agent for combating UVA damage.     

水稻中重金属的含量及其富集因素的探讨

采集我国12种土壤,进行盆栽水稻试验,结果表明:不同土壤上盆栽水稻糙米中镉、铜、锌、镍和铬的平均含量分别为0.035ppm、4.82ppm、23.45ppm、1.09ppm和0.102ppm,铅在糙米中未检出。 按自然地带划分,不同土壤上生长的糙米中6种元素除铬外,均以热带、亚热带湿润地区含量高。 不同土壤投加6种元素后种植水稻,以有机质含量高,pH适中的土壤上水稻生长较好,但各类土壤上生长的水稻均表现出受害症状。重金属在糙米中的累积随土壤pH升高而降低,随土壤有机质含量增高而减少。与土壤中<0.01毫米和<0.005毫米粒径含量呈负相关。     

崖沙燕繁殖期雄鸟的鸣叫行为

2003年3月～2004年4月在南充市郊的嘉陵江边记录了崖沙燕(Riparia riparia)繁殖期雄鸟的呜叫。声谱分析结果表明,崖沙燕繁殖期有8种呜叫(恫吓叫声、屈服叫声、求救叫声、警报叫声以及4种鸣唱声)。通过对其行为的实时观察,确定了每种呜叫的生物学意义。4种叫声是整个繁殖期的主要呜叫,而4种鸣唱声则主要出现在开春以后的集群求偶与筑巢期间。虽其鸣唱声仅有两种类型的短音节,但通过组合可形成含有多达4个或6个音节的鸣唱声。鸣唱声的持续时间分别为3184、1030、1274、1232ms。鸣唱声中的间歇时间分别占持续时间的47％、39％、50％、48％。     

Mechanisms for inhibition of hepatitis B virus gene expression and replication by hepatitis C virus core protein

We have demonstrated previously that the core protein of hepatitis C virus (HCV) exhibits suppression activity on gene expression and replication of hepatitis B virus (HBV). Here we further elucidated the suppression mechanism of HCV core protein. We demonstrated that HCV core protein retained the inhibitory effect on HBV gene expression and replication when expressed as part of the full length of HCV polyprotein. Based on the substitution mutational analysis, our results suggested that mutation introduced into the bipartite nuclear localization signal of the HCV core protein resulted in the cytoplasmic localization of core protein but did not affect its suppression ability on HBV gene expression. Mutational studies also indicated that almost all dibasic residue mutations within the N-terminal 101-amino acid segment of the HCV core protein (except Arg(39)-Arg(40)) impaired the suppression activity on HBV replication but not HBV gene expression. The integrity of Arg residues at positions 101, 113, 114, and 115 was found to be essential for both suppressive effects, whereas the Arg residue at position 104 was important only in the suppression of HBV gene expression. Moreover, our results indicated that the suppression on HBV gene expression was mediated through the direct interaction of HCV core protein with the trans-activator HBx protein, whereas the suppression of HBV replication involved the complex formation between HBV polymerase (pol) and the HCV core protein, resulting in the structural incompetence for the HBV pol to bind the package signal and consequently abolished the formation of the HBV virion. Altogether, this study suggests that these two suppression effects on HBV elicited by the HCV core protein likely depend on different structural context but not on nuclear localization of the core protein, and the two effects can be decoupled as revealed by its differential targets (HBx or HBV pol) on these two processes of the HBV life cycle.     

The type of competition modulates the ecophysiological response of grassland species to elevated CO2 and drought

The effects of elevated CO₂ and drought on ecophysiological parameters in grassland species have been examined, but few studies have investigated the effect of competition on those parameters under climate change conditions. The objective of this study was to determine the effect of elevated CO₂ and drought on the response of plant water relations, gas exchange, chlorophyll a fluorescence and aboveground biomass in four grassland species, as well as to assess whether the type of competition modulates that response. Elevated CO₂ in well‐watered conditions increased aboveground biomass by augmenting CO₂ assimilation. Drought reduced biomass by reducing CO₂ assimilation rate via stomatal limitation and, when drought was more severe, also non‐stomatal limitation. When plants were grown under the combined conditions of elevated CO₂ and drought, drought limitation observed under ambient CO₂ was reduced, permitting higher CO₂ assimilation and consequently reducing the observed decrease in aboveground biomass. The response to climate change was species‐specific and dependent on the type of competition. Thus, the response to elevated CO₂ in well‐watered grasses was higher in monoculture than in mixture, while it was higher in mixture compared to monoculture for forbs. On the other hand, forbs were more affected than grasses by drought in monoculture, while in mixture the negative effect of drought was higher in grasses than in forbs, due to a lower capacity to acquire water and mineral nutrients. These differences in species‐level growth responses to CO₂ and drought may lead to changes in the composition and biodiversity of the grassland plant community in future climate conditions.     

2009年第五届“现代生态学讲座”国际会议综述

"现代生态学讲座"系列会议是由国内外华人生态学家联合发起、为加强现代生态学的新理论、新观点、新方法和热点问题的交流与合作的国际会议.总结了2009年6月27～29日在兰州大学举行的第五届现代生态学讲座国际会议的全部二十五场报告,围绕"宏观生态学和可持续发展科学"的会议主题,分别从森林生态学、草地生态学、全球变化生态学、根际和土壤生态学、分子和行为生态学以及农业生态学等角度进行了分类总结.全部报告可归纳为"生态系统服务功能的物质基础"和"生态系统服务的生态学机制"两个大的基础理论问题,而解决问题的途径必须在人类-自然耦合生态系统的大框架下进行探索.对该会议的进一步改善提出了一些建议.