Regulation of stress-activated protein kinase signaling pathways by protein phosphatases.

Stress-activated protein kinase (SAPK) signaling plays essential roles in eliciting adequate cellular responses to stresses and proinflammatory cytokines. SAPK pathways are composed of three successive protein kinase reactions. The phosphorylation of SAPK signaling components on Ser/Thr or Thr/Tyr residues suggests the involvement of various protein phosphatases in the negative regulation of these systems. Accumulating evidence indicates that three families of protein phosphatases, namely the Ser/Thr phosphatases, the Tyr phosphatases and the dual specificity Ser/Thr/Tyr phosphatases regulate these pathways, each mediating a distinct function. Differences in substrate specificities and regulatory mechanisms for these phosphatases form the molecular basis for the complex regulation of SAPK signaling. Here we describe the properties of the protein phosphatases responsible for the regulation of SAPK signaling pathways.     

Studies on the resistance to tolerance induction against human IgG in DDD mice. III. Development of the resistance with age and cellular events.

Three-week-old DDD mice were easily rendered tolerant to human IgG while 12-week-old mice were tolerized only partially. Mechanisms of the development of the resistance with age were investigated. It was shown by the cell transfer experiments that spleen T cells, purified on a Tetron wool column, from older mice were responsible for the resistance, which was not associated with the loss of suppressor cells with age. To elucidate the possibility of whether tolerogen-sensitive spleen T cells differentiate into resistant ones, cell transfer experiments were carried out in which thymectomized, lethally irradiated mice were reconstituted with spleen cells from 3-week-old mice and then treated with the tolerogen on various days afterward. The results indicated that tolerance was inducible in these hosts to the same degree, irrespective of the timing of the tolerogen injection, while age-matched intact mice gradually acquired the resistance. Then the possibility of whether age of thymus affected tolerance inducibility of the hosts or not was examined. The tolerogen was injected into irradiated, bone-marrow-reconstituted mice which bore either 4- or 7-week-old thymus. It was shown that helper T cells newly generated under younger thymus acquired higher susceptibility to the tolerogen. There was no difference in tolerance inducibility irrespective as to whether bone marrow cells were prepared from younger or older mice. From these observations it was suggested that the resistance to tolerance induction in DDD mice is acquired through the appearance of resistant T cells which are generated from T-cell precursors in bone marrow under the influence of a radioresistant thymic constitution and predominantly located in the spleen.     

Kinetochore stretching-mediated rapid silencing of the spindle-assembly checkpoint required for failsafe chromosome segregation

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4D modeling in a gimbaled linear accelerator by using gold anchor markers

Purpose

The purpose of this study was to verify whether the dynamic tumor tracking (DTT) feature of a Vero4DRT system performs with 10-mm-long and 0.28 mm diameter gold anchor markers.

Changes of aliphatic C–H bonds in cyanobacteria during experimental thermal maturation in the presence or absence of silica as evaluated by FTIR microspectroscopy

Aliphatic C–H bonds are one of the major organic signatures detected in Proterozoic organic microfossils, and their origin is a topic of interest. To investigate the influence of the presence of silica on the thermal alteration of aliphatic C–H bonds in prokaryotic cells during diagenesis, cyanobacteria Synechocystis sp. PCC6803 were heated at temperatures of 250–450°C. Changes in the infrared (IR) signals were monitored by micro‐Fourier transform infrared (FTIR) spectroscopy. Micro‐FTIR shows that absorbances at 2,925 cm^?1 band (aliphatic CH₂) and 2,960 cm^?1 band (aliphatic CH₃) decrease during heating, indicating loss of the C–H bonds, which was delayed by the presence of silica. A theoretical approach using solid‐state kinetics indicates that the most probable process for the aliphatic C–H decrease is three‐dimensional diffusion of alteration products under both non‐embedded and silica‐embedded conditions. The extrapolation of the experimental results obtained at 250–450°C to lower temperatures implies that the rate constant for CH₃ (k_CH3) is similar to or lower than that for CH₂ (k_CH2; i.e., CH₃ decreases at a similar rate or more slowly than CH₂). The peak height ratio of 2,960 cm^?1 band (CH₃)/2,925 cm^?1 band (CH₂; R_3/2 values) either increased or remained constant during the heating. These results reveal that the presence of silica does affect the decreasing rate of the aliphatic C–H bonds in cyanobacteria during thermal maturation, but that it does not significantly decrease the R_3/2 values. Meanwhile, studies of microfossils suggest that the R_3/2 values of Proterozoic prokaryotic fossils from the Bitter Springs Group and Gunflint Formation have decreased during fossilization, which is inconsistent with the prediction from our experimental results that R_3/2 values did not decrease after silicification. Some process other than thermal degradation, possibly preservation of specific classes of biomolecules with low R_3/2 values, might have occurred during fossilization.     

Effect of gas pressure in the root and stem base zone on methane transport through rice bodies

Ebullition of gas bubbles from the soil surface is, in some cases (e.g., in early growth stage of rice), one of the major pathways for methane transport from rice paddies to the atmosphere. However, the role of the gas phase (entrapped gas) in the paddy soil in plant-mediated methane transport, which is the major pathway for methane emission, has not been clarified. To clarify the effect of the gas phase below ground on the methane emission rate through rice plants, we partly exposed the root and stem base of hydroponically grown rice to a high concentration of methane gas at various gas pressures, and immersed the rest of the roots in a solution with a high methane concentration. The methane emission rate was measured from the top of the rice plant using a flow-through chamber method. The methane emission rate drastically increased with a small increase in gas pressure in the gas phase at the root and stem base zone, with about a 3 times larger emission rate being observed with 10 × 10^-3 atm of extra pressure (corresponding to 10 cm of standing water in rice paddy) compared to no extra pressure. However, when alginate was applied to the stem near the base to prevent contact with the gas phase, the methane emission rate did not increase with increasing gas pressure. On the other hand, from observations in the rice paddy, it was found that the gas is entrapped near the surface (e.g., at a depth of 1 cm) and the gas entrapped in the soil would come into direct contact with a part of the stem near the base of the rice plant. Thus, the gas entrapped in the soil could enter into the rice body directly from the part of the stem near the base which is beneath the soil surface due to gas pressure in the gas phase resulting from the pressure exerted by the standing water. Hence, this mechanism involving the entrapped gas could play an important role in methane emission from rice paddy by affecting the plant-mediated methane transport as well as ebullition of gas bubbles.     

The dependence of methane transport in rice plants on the root zone temperature

Large diurnal and seasonal variations in methane flux from rice paddies have been found in many studies. Although these variations are considered to result from changes in methane formation rates in the soil and the transport capacity (e.g. biomass, physiological activities, and so on) of rice plants, the real reasons for such variations are as yet unclear. This study was conducted to clarify the effects of temperature on the rate of methane transport from the root zone to the atmosphere using hydroponically grown rice plants. Methane emission rates from the top of the rice plants whose roots were soaked in a solution with a high methane concentration were measured using a flow-through chamber method with the top or root of the rice plants being kept at various temperatures. The methane emission rates and methane concentrations in solution were analyzed using a diffusion model which assumes that the methane emission from a rice paddy is driven by molecular diffusion through rice plants by a concentration gradient. In the experiment where the temperature around the root was changed, the conductance for methane diffusion was typically 2.0-2.2 times larger when the solution temperature was changed from 15 to 30 °C. When the air temperature surrounding the top of the rice plant was changed, the change in conductance was much less. In addition, from measurements of methane flux and methane concentration in soil water in a lysimeter rice paddy during the 2 growing seasons of rice, it was found that the conductance for methane transport was correlated with the soil temperature at 5 cm depth. These results suggest that the temperature around the root greatly affects the methane transport process in rice plants, and that the process of passing through the root is important in determining the rate of methane transport through rice plants.     

Shell productivity of the large benthic foraminifer Baculogypsina sphaerulata,based on the population dynamics in a tropical reef environment

Carbonate production by large benthic foraminifers is sometimes comparable to that of corals and coralline algae, and contributes to sedimentation on reef islands and beaches in the tropical Pacific. Population dynamic data, such as population density and size structure (size-frequency distribution), are vital for an accurate estimation of shell production of foraminifers. However, previous production estimates in tropical environments were based on a limited sampling period with no consideration of seasonality. In addition, no comparisons were made of various estimation methods to determine more accurate estimates. Here we present the annual gross shell production rate of Baculogypsina sphaerulata, estimated based on population dynamics studied over a 2-yr period on an ocean reef flat of Funafuti Atoll (Tuvalu, tropical South Pacific). The population density of B. sphaerulata increased from January to March, when northwest winds predominated and the study site was on the leeward side of reef islands, compared to other seasons when southeast trade winds predominated and the study site was on the windward side. This result suggested that wind-driven flows controlled the population density at the study site. The B. sphaerulata population had a relatively stationary size-frequency distribution throughout the study period, indicating no definite intensive reproductive period in the tropical population. Four methods were applied to estimate the annual gross shell production rates of B. sphaerulata. The production rates estimated by three of the four methods (using monthly biomass, life tables and growth increment rates) were in the order of hundreds of g CaCO₃ m⁻² yr⁻¹ or cm⁻³ m⁻² yr⁻¹, and the simple method using turnover rates overestimated the values. This study suggests that seasonal surveys should be undertaken of population density and size structure as these can produce more accurate estimates of shell productivity of large benthic foraminifers.

     

Consumer acceptance of food crops developed by genome editing

One of the major problems regarding consumer acceptance of genetically modified organisms (GMOs) is the possibility that their transgenes could have adverse effects on the environment and/or human health. Genome editing, represented by the CRISPR/Cas9 system, can efficiently achieve transgene-free gene modifications and is anticipated to generate a wide spectrum of plants. However, the public attitude against GMOs suggests that people will initially be unlikely to accept these plants. We herein explored the bottlenecks of consumer acceptance of transgene-free food crops developed by genome editing and made some recommendations. People should not pursue a zero-risk bias regarding such crops. Developers are encouraged to produce cultivars with a trait that would satisfy consumer needs. Moreover, they should carefully investigate off-target mutations in resultant plants and initially refrain from agricultural use of multiplex genome editing for better risk–benefit communication. The government must consider their regulatory status and establish appropriate regulations if necessary. The government also should foster communication between the public and developers. If people are informed of the benefits of genome editing-mediated plant breeding and trust in the relevant regulations, and if careful risk–benefit communication and sincere considerations for the right to know approach are guaranteed, then such transgene-free crops could gradually be integrated into society.