The Effect of Damage of a Plasma-Treated Polyurethane Surface on Bacterial Adhesion

Biophysics - Abstract—Elastic polyurethanes are flexible materials used in biomedical products. Plasma treatment is a promising method of surface modification. However, external deformation...     

Excitable Population Dynamics,Biological Control Failure,and Spatiotemporal Pattern Formation in a Model Ecosystem

Biological control has been attracting an increasing attention over the last two decades as an environmentally friendly alternative to the more traditional chemical-based control. In this paper, we address robustness of the biological control strategy with respect to fluctuations in the controlling species density. Specifically, we consider a pest being kept under control by its predator. The predator response is assumed to be of Holling type III, which makes the system’s kinetics “excitable.” The system is studied by means of mathematical modeling and extensive numerical simulations. We show that the system response to perturbations in the predator density can be completely different in spatial and non-spatial systems. In the nonspatial system, an overcritical perturbation of the population density results in a pest outbreak that will eventually decay with time, which can be regarded as a success of the biological control strategy. However, in the spatial system, a similar perturbation can drive the system into a self-sustained regime of spatiotemporal pattern formation with a high pest density, which is clearly a biological control failure. We then identify the parameter range where the biological control can still be successful and describe the corresponding regime of the system dynamics. Finally, we identify the main scenarios of the system response to the population density perturbations and reveal the corresponding structure of the parameter space of the system. A. Morozov is on leave from Shirshov Institute of Oceanology, Russian Academy of Science, Nakhimovsky Prosp. 36, Moscow 117218, Russia.     

Molecular basis of the biological activity of substances and homeopathic remedies at zero concentrations

While getting ultra los dosages in serial dilutions interactions between a substance and impurities of a solvent occur parallel with diminishing of concentrations. The concentration of impurities in high dilutions prevails the calculated concentration of substrate. Experiments show that different concentrations of compounds of impurities in a solvent correspond to different substances in different dilutions, including < 10(-24) mol/l. While dissolving three components--a solvent, impurities and a substance--participate in two processes: changing of concentration and changing of composition. Changed chemical composition of impurities of a solvent reflects specificity of physicochemical properties of a dissolving substance and is the molecular basis for biological activity of solutions with a concentration lower than 10(-24) mol/l.     

Blocking of cold paralysis of physiological functions

For more than 100-year history of studying hypothermia a rewarming of a cooled organism was always considered as the only method of restoring the cold-paralysed physiological functions and the vital activity of an overcooled organism of homoiothermal animals and humans. The paper gives the results of applying the method developed at our Laboratory, of restoring the cold-paralysed important physiological functions after a continuous cooling of rats, without rewarming the animals.     

Mutation in the structure of exon 7 of the phenylalanine hydroxylase in phenylketonuria patients from the Novosibirsk area

The spectrum and frequency of mutations of exon 7 of the gene for phenylalanine hydroxylase (PAH) were studied in 34 phenylketonuria (PKU) patients living in Novosibirsk oblast. The five most prevalent mutations constituted 17.64% of defective alleles: R243Q (1.47%), R252W (1.47%), R261Q (5.88%), E280K (1.47%), and P281L (7.35%). A neutral polymorphic locus V245V was found within exon 7.     

The Transmembrane Protein of the Human Endogenous Retrovirus - K (HERV-K) Modulates Cytokine Release and Gene Expression

Numerous copies of endogenous retroviruses are present in the genome of mammals including man. Although most of them are defective, some, e.g., the human endogenous retroviruses HERV-K, were found to be expressed under certain physiological conditions. For instance, HERV-K is expressed in germ cell tumours and melanomas as well as in the placenta. Most exogenous retroviruses including the human immunodeficiency virus HIV-1 induce severe immunodeficiencies and there is increasing evidence that the transmembrane envelope (TM) proteins of these retroviruses may be involved. We show here that HERV-K particles released from a human teratocarcinoma cell line, a recombinant TM protein and a peptide corresponding to a highly conserved so-called immunosuppressive domain in the TM protein of HERV-K inhibit the proliferation of human immune cells, induce modulation of the expression of numerous cytokines, and modulate the expression of cellular genes as detected by a microarray analysis. The changes in cytokine release and gene expression induced by the TM protein of HERV-K are similar to those found previously induced by the TM protein of HIV-1. These data suggest that the mechanism of immunosuppression may be similar for different retroviruses and that the expression of the TM protein in tumours and in the placenta may suppress immune responses and thus prevent rejection of the tumour and the embryo.     

Protein-protein docking predictions for the CAPRI experiment

We predicted structures for all seven targets in the CAPRI experiment using a new method in development at the time of the challenge. The technique includes a low-resolution rigid body Monte Carlo search followed by high-resolution refinement with side-chain conformational changes and rigid body minimization. Decoys (approximately 10(6) per target) were discriminated using a scoring function including van der Waals and solvation interactions, hydrogen bonding, residue-residue pair statistics, and rotamer probabilities. Decoys were ranked, clustered, manually inspected, and selected. The top ranked model for target 6 predicted the experimental structure to 1.5 A RMSD and included 48 of 65 correct residue-residue contacts. Target 7 was predicted at 5.3 A RMSD with 22 of 37 correct residue-residue contacts using a homology model from a known complex structure. Using a preliminary version of the protocol in round 1, target 1 was predicted within 8.8 A although few contacts were correct. For targets 2 and 3, the interface locations and a small fraction of the contacts were correctly identified.     

The influence of cooling rates and medium tonicity on Escherichia coli B/r survival after heating with different lethal temperatures

Cell thermosensitivity of Escherichia coli B/r increases with the cooling rise, especially in hypertonic conditions after heating at 50, 55 and 60 degrees C. A certain relationship is suggested between the observed phenomenon and the osmotic homeostasis system of microorganisms under condition of thermogenic and tonic stress.