Exclusive cytosolic localization and broad tRNA<Superscript>Ser</Superscript> specificity of <Emphasis Type="Italic">Arabidopsis thaliana</Emphasis> seryl-tRNA synthetase

Aminoacyl-tRNA synthetases (aaRSs) decipher the genetic code, covalently linking amino acids to cognate tRNAs, thus preparing substrates for the process of translation. Although aaRSs funtion primarily in translation and are localized in cytosol, mitochondria and chloroplasts there are many reports on their additional functions and subcellular destinations beyond translation. However, data on plant aaRSs are scarce. Initial analysis of amino acid sequence of Arabidopsis thaliana seryl-tRNA synthetase (SerRS) suggested that protein contains putative nuclear localization signals. GFP-localization experiments in transiently transformed epidermal onion cells and Arabidopsis protoplasts gave ambiguous results because in some cells SerRS appeared to be dually localized to both cytosol and nucleus. However, data obtained on transgenic lines expressing SerRS-TAP and GFP-SerRS revealed exclusive cytosolic location of SerRS. Subcellular distribution of SerRS did not change during stress. Cytosolic Arabidopsis SerRS was expressed and purified. The enzyme efficiently aminoacylated eukaryotic and bacterial tRNAs^Ser, that are structurally very different. Given the fact that the same behavior was previously shown for monocot maize SerRS, it seems that plant SerRSs exhibit unusually broad tRNA^Ser specificity, unlike SerRSs from other organisms. Possible functional implications of this unique characteristic of plant SerRSs are discussed.     

Offspring sex ratio and development are determined by copulation activity in Echinothrips americanus MORGAN 1913 (Thysanoptera: Thripidae)

The costs of parthenogenetic reproduction are more or less unknown in thrips. However, IPM strategies require an understanding of temporal and spatial life‐history variations and sex ratios. Hence, different circumstances with regard to mating and sperm storage, and their effects on the life history of the adults and progeny, were tested in Echinothrips americanus. Different conditions were investigated: (1) one female and one male with permanent access to each other, (2) one female and one male with limited access to each other, (3) one virgin male only, (4) one virgin female only and (5) two virgin females permanently associated. Mating or not mating has a significant effect on the longevity of females and males, and on female fecundity. As a result of tested condition (2), limited access has a positive effect on longevity of a male. On the other hand, permanent access (1) or no access to a female (3) leads to shorter longevity of a male. For a female with permanent access to a male (1), longevity and oviposition rate are reduced. In addition, test conditions of parents have a significant effect on developmental time of the offspring and their sex ratio. Compared to a female under condition (1), a female with limited access to a male (2) delivers offspring with a more male‐biased sex ratio, independent of the period of time after last male access. Concerning the time for development of the offspring, females under condition (2) and under condition (4) deliver an F1 generation with a shorter developmental time than those under condition (1). Therefore, E. americanus seems to have a feedback system, that is offspring in low male‐biased populations develop faster and generate an adapted sex ratio. Hence, the assumption of a lower infestation risk in arrhenotokous than in thelytokous parthenogenesis should be reconsidered.     

Life cycle inventories of electricity generation and power supply in version 3 of the ecoinvent database—part II: electricity markets

Purpose

Representative, consistent and up-to-date life cycle inventories (LCI) of electricity supply are key elements of ecoinvent as an LCI background database since these are often among the determining factors with regard to life cycle assessment (LCA) results. ecoinvent version 3 (ev3) offers new LCI data of power supply (electricity markets) in 71 geographies. This article gives an overview of these electricity markets and discusses new ecoinvent features in the context of power supply.

Methods

The annual geography- and technology-specific electricity production for the year 2008 specifies the technology shares on the high-, medium- and low-voltage level electricity markets. Data are based on IEA statistics. Different voltage levels are linked by transformation activities. Region-specific electricity losses due to power transmission and voltage transformation are considered in the market and transformation activities. The majority of the 71 power markets are defined by national boundaries. The attributional ecoinvent system model in ev3 with linking to average current suppliers results in electricity markets supplied by all geography-specific power generation technologies and electricity imports, while the consequential system model generates markets only linked to unconstrained suppliers.

Results and discussion

The availability of LCI data for 71 electricity markets in ev3 covering 50 countries reduces the “Rest-of-the-World” electricity supply not covered by country- or region-specific inventories to 17 % for the year 2008. Specific power supply activities for all countries contributing more than 1 % to global electricity production are available. The electricity markets show large variations concerning contributions from specific technologies and energy carriers. Imports can substantially change the national/regional power mix, especially in small markets. Large differences can also be observed between the electricity markets in the attributional and the consequential database calculation. Region-specific total power losses between production on the high voltage level and consumer on the low voltage level are on the order of 2.5–23 %.

Conclusions

Electricity supply mixes (electricity markets) in the ecoinvent database have been updated and substantially extended for v3. Inventories for electricity supply in all globally important economies are available with geography-specific technology and market datasets which will contribute to increasing quality and reducing uncertainties in LCA studies worldwide and to allow more accurate estimation of environmental burdens from global production chains. Future work should focus on improving the details of country-specific data, implementation of more countries into the database, splitting of large countries into smaller regions and on developing a more sophisticated approach specifying country-specific electricity mixes in consequential system models.

     

Putting indigenous conservation policy into practice delivers biodiversity and cultural benefits

In the midst of global species loss, Indigenous languages and culture are experiencing similar declines. Current international policies and programs advocate the involvement of local and Indigenous people in sustaining biodiversity and culture, but the anticipated benefits are not always realized or assessed. This paper draws on three objectives of current international and Australian policy to explore the biological and cultural benefits of a collaborative cross-cultural biodiversity project of Indigenous rangers and university ecologists in remote northern Australia. Policies promoting blends of biological and cultural conservation from International to national scale share the following objectives: (1) involve Indigenous Peoples in biodiversity conservation; (2) maintain and develop Indigenous knowledge and culture; and (3) recognize and promote Indigenous natural and cultural resource management and traditional knowledge. This paper reflects on the project benefits in the context of these objectives, with the aim of informing future policy and program development. Biodiversity benefits of the cross-cultural project included new public records for a relatively poorly known but species rich area that are being used to inform local Indigenous land management, as well as specimens and tissue samples with which to explore the genetic diversity and evolutionary history of the region. Cultural benefits included compiling a local field guide that contains ten different languages and engaging young people to facilitate intergenerational transfer of threatened traditional knowledge. Promotion of the work at local to national fora addressed the third objective and enhanced Indigenous involvement. We demonstrate that top-down policy directives can be implemented to deliver on-ground mutual benefits for science and Indigenous communities.     

Bursicon-α subunit modulates dLGR2 activity in the adult Drosophila melanogaster midgut independently to Bursicon-β

Bursicon is the main regulator of post molting and post eclosion processes during arthropod development. The active Bursicon hormone is a heterodimer of Burs-α and Burs-β. However, adult midguts express Burs-α to regulate the intestinal stem cell niche. Here, we examined the potential expression and function of its heterodimeric partner, Burs-β in the adult midgut. Unexpectedly, our evidence suggests that Burs-β is not significantly expressed in the adult midgut. burs-β mutants displayed the characteristic developmental defects but showed wild type-like adult midguts, thus uncoupling the developmental and adult phenotypes seen in burs-α mutants. Gain of function data and ex vivo experiments using a cAMP biosensor, demonstrated that Burs-α is sufficient to drive stem cell quiescence and to activate dLGR2 in the adult midgut.

Our evidence suggests that the post developmental transactivation of dLGR2 in the adult midgut is mediated by Burs-α and that the β subunit of Bursicon is dispensable for these activities.     

The functional morphology and role of the thelycum in insemination,and its relation to the mating system in the seagrass shrimp Ambidexter symmetricus (Decapoda: Processidae)

There is considerable variation in structures known to function in the transfer and storage of sperm in female decapod crustaceans. The thelycum is a secondary sexual character that forms from the posterior thoracic sterna of female shrimps (especially penaeoids and sergestoids). Females in the caridean shrimp family Processidae have a thelycum‐like structure which rarely occurs in other caridean females. We tested the hypothesis that the processid thelycum serves as a spermatheca for either short‐term attachment or long‐term sperm storage. When inseminated females of the processid Ambidexter symmetricus were isolated after mating, newly spawned and then incubated embryos hatched, but in the continued absence of a male, females were unable to fertilize a subsequent spawn. Our observations on A. symmetricus show that sperm were not retained after female spawning, and thus the thelycum is not used for long‐term sperm storage as in many penaeoids. In A. symmetricus, the thelycum may serve as an external median spermatheca (seminal receptacle) for temporary attachment and storage of a sperm mass during the 2–3 h interval between mating and spawning. Observations on mating behavior support the hypothesis of a pure‐search (promiscuous) mating system in A. symmetricus, with males showing little interest before, and copulating with females only after, the female parturial molt. Mating encounters were short (<2 min). This mating system is like that of other caridean shrimps with populations structured similarly to those in A. symmetricus: a relatively high density of mobile individuals and sexual dimorphism in body size (reproductive females larger than males) but not in cheliped weaponry (similar in males and females).     

Probing the Diameter Limit of Single Walled Carbon Nanotubes in SWCNT: Fullerene Solar Cells

In this work, for the first time, the diameter limit of surfactant wrapped single walled carbon nanotubes (SWCNTs) in SWCNT:C₆₀ solar cells is determined through preparation of monochiral small and large diameter nanotube devices as well as those from polychiral mixtures. Through assignment of the different nanotube chiralities by photoluminescence and optical density measurements a diameter limit yielding 0% internal quantum efficiency (IQE) is determined. This work provides insights into the required net driving energy for SWCNT exciton dissociation onto C₆₀ and establishes a family of (n,m) species which can efficiently be utilized in polymer‐free SWCNT:C₆₀ solar cells. Using this approach the largest diameter nanotube with an IQE > 0% is found to be (8,6) with a diameter of 0.95 nm. Possible strategies to extend this diameter limit are then discussed.     

How Molecules with Dipole Moments Enhance the Selectivity of Electrodes in Organic Solar Cells – A Combined Experimental and Theoretical Approach

Simple organic molecules with permanent dipole moments – amino acids and heterocycles – have been successfully employed in bulk‐heterojunction organic solar cells as interlayer between photoactive material and electron contact. A large increase of open‐circuit voltage and fill factor can be observed for four different polymers as donor material in the photoactive layer. A combination of current–voltage curves, scanning Kelvin‐probe atomic force microscopy, ultraviolet photoelectron spectroscopy, and electroluminescence measurements as well as numerical simulations are carried out to clarify in detail the underlying mechanisms. All results fully confirm the hypothesis that the main effect is an accumulation of electrons and a depletion of holes in the photoactive layer in the vicinity of the electron contact induced by a decrease of its effective work function. Further, density functional theory calculations and literature reports of the energy levels of the dipole molecules strongly suggest that the charge carriers tunnel through the thin dipole layer which does however not limit the current. This represents a versatile, simple, and cheap method to realize highly selective contacts which may also be beneficial for other types of solar cells and devices where contact selectivity is crucial.     

The Arginine Methyltransferase PRMT6 Cooperates with Polycomb Proteins in Regulating HOXA Gene Expression

Protein arginine methyltransferase 6 (PRMT6) catalyses asymmetric dimethylation of histone H3 at arginine 2 (H3R2me2a), which has been shown to impede the deposition of histone H3 lysine 4 trimethylation (H3K4me3) by blocking the binding and activity of the MLL1 complex. Importantly, the genomic occurrence of H3R2me2a has been found to coincide with histone H3 lysine 27 trimethylation (H3K27me3), a repressive histone mark generated by the Polycomb repressive complex 2 (PRC2). Therefore, we investigate here a putative crosstalk between PRMT6- and PRC-mediated repression in a cellular model of neuronal differentiation. We show that PRMT6 and subunits of PRC2 as well as PRC1 are bound to the same regulatory regions of rostral HOXA genes and that they control the differentiation-associated activation of these genes. Furthermore, we find that PRMT6 interacts with subunits of PRC1 and PRC2 and that depletion of PRMT6 results in diminished PRC1/PRC2 and H3K27me3 occupancy and in increased H3K4me3 levels at these target genes. Taken together, our data uncover a novel, additional mechanism of how PRMT6 contributes to gene repression by cooperating with Polycomb proteins.     

Alterations in the mir-15a/16-1 Loci Impairs Its Processing and Augments B-1 Expansion in De Novo Mouse Model of Chronic Lymphocytic Leukemia (CLL)

New Zealand Black (NZB) mice, a de novo model of CLL, share multiple characteristics with CLL patients, including decreased expression of miR-15a/16-1. We previously discovered a point mutation and deletion in the 3'' flanking region of mir-16-1 of NZB and a similar mutation has been found in a small number of CLL patients. However, it was unknown whether the mutation is the cause for the reduced miR-15a/16-1 expression and CLL development. Using PCR and in vitro microRNA processing assays, we found that the NZB sequence alterations in the mir-15a/16-1 loci result in deficient processing of the precursor forms of miR-15a/16-1, in particular, we observe impaired conversion of pri-miR-15a/16-1 to pre-miR-15a/16-1. The in vitro data was further supported by derivation of congenic strains with replaced mir-15a/16-1 loci at one or both alleles: NZB congenic mice (N^miR+/-) and DBA congenic mice (D^miR-/-). The level of miR-15a/16-1 reflected the configuration of the mir-15a/16-1 loci with DBA congenic mice (D^miR-/-) showing reduced miR-15a levels compared to homozygous wild-type allele, while the NZB congenic mice (N^miR+/-) showed an increase in miR-15a levels relative to homozygous mutant allele. Similar to Monoclonal B-cell Lymphocytosis (MBL), the precursor stage of the human disease, an overall expansion of the B-1 population was observed in DBA congenic mice (D^miR-/-) relative to wild-type (D^miR+/+). These studies support our hypothesis that the mutations in the mir-15a/16-1 loci are responsible for decreased expression of this regulatory microRNA leading to B-1 expansion and CLL development.