Molecular approaches for AM fungal community ecology: A primer

Molecular techniques are no longer optional for ecologists interested in arbuscular mycorrhizal (AM) communities. Understanding the role of these soil fungi in natural systems requires knowledge of their abundance and identity but this is impossible to achieve without a molecular approach. Adapting molecular tools to AM fungi can be challenging because of the unique biology of the fungi. Moreover, many recruits in the field of mycorrhizal ecology have little or no experience with molecular biology. Here, we outline a conceptual framework for designing robust ecological experiments with AM fungi using molecular approaches.     

Controls on dissolved organic carbon composition and export from rice-dominated systems

Rice field outflow can contain high concentrations of dissolved organic carbon (DOC), which plays a crucial role in drinking water quality and aquatic ecosystem processes. This study examined the relationship between potential determining factors (i.e. rice area, outflow, drainwater reuse, soil properties, and time, measured as the day in the growing season) and the concentration and composition of DOC exported from 11 rice-dominated subwatersheds. Samples were collected from subwatershed inflow and outflow every 1–2 weeks from May through September 2008 and analyzed for DOC concentration, trihalomethane formation potential (THMFP), and also specific ultraviolet absorbance (SUVA₂₅₄) and the spectral slope parameter (S), which are indicators of DOC composition. Concentrations of DOC across all subwatersheds and sampling dates ranged from 1.56 to 14.43 mg L^?1 (mean = 4.32 mg L^?1). Linear mixed effects (LME) analysis indicated that DOC concentration decreased over time, and that THMFP, and DOC and THM flux, decreased over time, but increased with outflow. LME analysis of the SUVA₂₅₄ and S parameters indicated that the fraction of aromatic DOC moieties increased with time, outflow, and reuse. Additionally, apparent peaks in DOC concentrations, THMFP, and SUVA₂₅₄ coincided with the onsets of flooding and draining. Lastly, subwatersheds with outflow less than approximately 4,700 m³ ha^?1 behaved as sinks of DOC. Our findings suggest that water management factors such as outflow, reuse, and discrete irrigation events, all of which vary over the course of the growing season, were the dominant determinants of DOC concentration and composition.     

Human DHHC proteins: a spotlight on the hidden player of palmitoylation

Palmitoylation is one of the most common posttranslational lipid modifications of proteins and we now know quite a lot about it. However, the state of knowledge about the enzymes that catalyze this process is clearly insufficient. This review is focused on 23 human DHHC genes and their products - protein palmitoyltransferases. Here we describe mainly the structure and function of these proteins, but also, to a lesser degree, what the substrates of the enzymes are and whether they are related to various diseases. The main aim of this review was to catalogue existing information concerning the human DHHC family of genes/proteins, making them and their functions easier to understand.     

Androgenesis-inducing stress treatments change phytohormone levels in anthers of three legume species (Fabaceae)

Legumes are recalcitrant to androgenesis and induction protocols were only recently developed for pea (Pisum sativum L.) and chickpea (Cicer arietinum L.), albeit with low regeneration frequencies. Androgenesis is thought to be mediated through abscisic acid (ABA) but other phytohormones, such as auxins, cytokinins, and gibberellins, have also been implicated. In view of improving induction protocols, the hormone content of pea, chickpea, and lentil anthers was measured after exposure to cold, centrifugation, electroporation, sonication, osmotic shock, or various combinations thereof using an analytical mass spectrometer. Indole-3-acetic acid (IAA) had a key function during the induction process. In pea, high concentrations of IAA-asparagine (IAA-Asp), a putative IAA metabolite, accumulated during the application of the different stresses. In chickpea, the IAA-Asp concentration increased 30-fold compared to pea but only during the osmotic shock treatment and likely as a result of the presence of exogenous IAA in the medium. In contrast, no treatment in lentil (Lens culinaris) invoked such an increase in IAA-Asp content. Of the various cytokinins monitored, only cis zeatin riboside increased after centrifugation and electroporation in pea and possibly chickpea. No bioactive gibberellins were detected in any species investigated, indicating that this hormone group is likely not linked to androgenesis in legumes. In contrast to the other stresses, osmotic shock treatment caused a reduction in the levels of all hormones analyzed, with the exception of IAA-Asp in chickpea. A short period of low hormone content might be a necessary transition phase for androgenesis induction of legumes. KEY MESSAGE: Five androgenesis-inducing stress treatments changed content of ABA, auxin and cytokinin in anthers of three legumes. Osmotic shock treatment differed because it reduced hormone content to very low levels.     

Management of a post-radiotherapy xerostomic patient--a case report

doi: 10.1111/j.1741‐2358.2011.00519.x Management of a post‐radiotherapy xerostomic patient – a case report Objective: The objective of the study was to fabricate complete denture with palatal reservoir filled with artificial saliva for a post radiotherapy edentulous patient. Background: Xerostomia is a subjective complaint rather than a disease. It is caused by irradiation, medication, Sjogren's syndrome & neurological factors such as stress. Radiotherapeutic treatment of head and neck cancer patients often causes long term dysfunction involving their salivary function, swallowing capabilities & taste. All three of these domains are affected by radiation‐ induced damage to the salivary glands. This in turn results in poor retention of complete denture, frequent trauma to alveolar ridge & other oral infections. All these events drastically affects quality of life of ageing patients. Material and Method: A complete denture in heat cure acrylic resin was fabricated in which a palatal reservoir was made on the palatal side. Results: Problems arising due to xerostomia were reduced to a great extent. Conclusion: Prosthodontic management of Xerostomic patient include several techniques. This paper presents a case report of post radiotherapy edentulous patient in which complete denture with palatal reservoir filled with artificial saliva was fabricated.     

Extension of the Nef reaction to C-glycosylnitromethanes

Acid-catalysed methanolysis of 3,4,5,6-tetra-O-acetyl-1,2-dideoxy-l-arabino-hex-1-enitol proceeds via a cascade set of consecutive reactions resulting in its regiospecific conversion to a mixture of alpha- and beta-C-L-arabinofuranosylmethanal dimethyl acetals and a mixed internal methyl acetal. Structures of the final products of the overall process provide unique evidence that a kinetically controlled, five-membered-ring closure precedes a six-membered-ring closure in reversible systems capable of giving both five-membered and six-membered all-sp3-atom rings. Determination of the reaction intermediate enabled extension of the Nef reaction to C-glycosylnitromethanes. Protonated aci-nitro forms of C-glycosylnitromethanes that are resistant to the Nef reaction in aqueous acidic media undergo a modified Nef reaction in acidified methanol, and the corresponding C-glycosylmethanal dimethyl acetals with alpha-L-arabinopyranosyl, beta-D-glucopyranosyl, beta-D-galactopyranosyl, beta-D-mannopyranosyl and beta-L-rhamnopyranosyl configurations were obtained in moderate yields.