Evaluating soil biochemical/microbial indices as ecological indicators of different land use/cover in northern Iran

The objective of the study was to examine changes in microbial parameters have been used to monitor changes in soil quality under different land uses in north of Iran. The microbial parameters included microbial respiration (MR), substrate induced respiration (SIR), carbon availability index (CAI), microbial biomass carbon (MBC), microbial biomass nitrogen (MBN), ratio of MBC/MBN, metabolic quotient (qCO₂) and microbial ratio were determined under different land use/cover, i.e. virgin natural forest (VNF), degraded natural forest (DNF), alder plantation (AP), sequoia plantation (SP), improved fallow (IF) and home garden (HG) areas in northern Iran. Five composed samples per land use/cover were taken from the top 10 cm of the soil. MR and SIR (0.45 and 1.66 mg CO₂-C g^?1 day^?1, respectively) were found to be significantly higher under AP land uses than in the other areas. CAI did not differ for the land uses; MBC (591 and 590 mg kg^?1, respectively) had higher significantly under SP and VNF land uses than in the other areas. MBN (64.25 and 62.33, respectively mg kg^?1) was significantly higher in AP and VNF land uses, ratio of MBC/MBN (17.02) was higher in SP land use than other areas, HG had significantly higher qCO₂ (0.0012 μg CO₂-C mg^?1 MBC day^?1) and finally microbial ratio was significantly higher under IF (599.16) in comparison with HG > AP ≈ DNF > VNF > SP areas. Overall, our results indicate that AP land use (Alnus subcordata C. A. Mey.) increase of soil quality and alder plantation is suitable for rehabilitation of degraded natural forests.     

New Karplus equations for 2JHH, 3JHH, 2JCH, 3JCH, 3JCOCH, 3JCSCH, and 3JCCCH in some aldohexopyranoside derivatives as determined using NMR spectroscopy and density functional theory calculations

The (1)H-(13)C coupling constants of methyl alpha- and beta-pyranosides of D-glucose and D-galactose have been measured by one-dimensional and two-dimensional (1)H-(13)C heteronuclear zero and double quantum, phase sensitive J-HMBC spectra to determine a complete set of coupling constants ((1)J(CH), (2)J(CH), (3)J(CH), (2)J(HH), and (3)J(HH)) within the exocyclic hydroxymethyl group (CH(2)OH) for each compound. In parallel with these experimental studies, structure, energy, and potential energy surfaces of the hydroxymethyl group for these compounds were determined employing quantum mechanical calculations at the B3LYP level using the 6-311++G( * *) basis set. Values of the vicinal coupling constants involving (1)H and (13)C in the C5-C6 (omega) and C6-O6 (theta) torsion angles in the aldohexopyranoside model compounds were calculated with water as the solvent using the PCM method. To test the relationship between (3)J(CXCH) (X=C, O, S) and torsion angle C1-X (phi) around the anomeric center, the conformations of 24 derivatives of glucose and galactose, which represent sequences of atoms at the anomeric center of C-glycosides (C-C bond), O-glycosides (C-O bond), thioglycosides (C-S bond), glycosylamines (C-N bond), and glycosyl halides (C-halogen (F/Cl) bond) have been calculated. Nonlinear regression analysis of the coupling constants (1)J(C1,H1), (2)J(C5,H6R), (2)J(C5,H6S), (2)J(C6,H5), (3)J(C4,H6R), (3)J(C4,H6S), (2)J(H6R,H5), and (3)J(H5,H6R) as well as (3)J(CXCH) (X=C, O, S) on the dihedral angles omega, theta, and phi have yielded new Karplus equations. Good agreement between calculated and experimentally measured coupling constants revealed that the DFT method was able to accurately predict J-couplings in aqueous solutions.     

Quantification of spiroether isomers and herniarin of different parts of Matricaria matricarioides and flowers of Chamaemelum nobile

A simple HPLC-PAD-MS method was established to quantitatively analyse two spiroether isomers (cis-en-yn-dicycloether and trans-en-yn-dicycloether) and the main coumarin, herniarin, in chamomile herbs, simultaneously. By using this method, the contents of these three compounds in the flowers of two chamomile species, Roman chamomile (Chamaemelum nobile) and pineapple weed (Matricaria matricarioides), as well as in different parts of pineapple weed, were investigated. It was found that the flowers of both herbs contained large amounts of cis-en-yn-dicycloether and trans-en-yn-dicycloether, with the trans-form being more abundant than the cis-form. The leaves of pineapple weed were found to have the highest concentration of cis-en-yn-dicycloether and herniarin than the other parts. HPLC-PAD-MS-guided isolation and identification of other constituents are also discussed.     

MAP30 transgenic tobacco lines: from silencing to inducing

Molecular Biology Reports - DNA methylation is one of the most important epigenetic event that regulates gene expression. In addition to DNA methylation, transgene copy number may induce gene...     

New data on the Rectogordius (foraminifera) abundance zone (Latest Carboniferous: Gzhelian) of the Zaladou Formation (east-central Iran,Tabas block,Shishtu section)

The Rectogordius (Foraminifera) abundance zone is described in the east of the Shishtu village in the Ozbak Kuh Mountain. The samples were collected in the Zaladou Formation., which is 60 m thick and composed of shales, sandstones, sandy limestones, microconglomerate, bioclastic limestones, coral limestone and fusulinid limestones. The Rectogordius abundance zone was found in sandy bioclastic limestone. It displays two species and three subspecies of this foraminifer, including Rectogordius iranicus, R. iranicus gadukensis, R. minimus and R. minimus shishtuensis n. subsp., R. iranicus ozbakensis n. subsp. The age of this abundance zone is considered to be Gzhelian, due to the distribution of Rectogordius in Central Iran (Ozbak Kuh; Zaladou Formation), central and eastern Alborz (Emarat Fm.), Sanandaj-Sirjan zone (Vazhnan Formation), as well as in the Donets, Arctic Canada, Afghanistan, and the Carnic Alps. The genus Rectogordius is possibly restricted to the northern Paleotethys margin, northern Cimmerian margin, shelf of the Uralian Ocean as far as the northernmost part of North America. Two new subspecies Rectogordius minimus shishtuensis n. subsp. and Rectogordius iranicus ozbakensis n. subsp. are described.     

Schindleria parva,a new species of Schindler's fish (Teleostei: Schindleriidae: Schindleria) from Jeddah,Saudi Arabia,Red Sea

Schindleria parva, a new species of the family Schindleriidae, is described from two specimens collected from the central Red Sea of Saudi Arabia. The new species is characterized by lack of pigmentation on the body, possession of an inconspicuous gas bladder and the presence of small teeth on the premaxillae. The holotype is a female of 11 mm standard length (SL) (11.9 mm total length) and the paratype is a male of 9 mm SL. Dorsal fin rays 10 (9) anal fin rays 9 (7). The body depth at pectoral-fin origin 5% (4%) of SL, depth at anal-fin origin 8% (7%) SL, predorsal length 63% (65%) SL, preanal length 72% (72%) SL, the first anal-fin ray situated below the fourth dorsal-fin ray), a total of 23 + 16 myomeres. The female contained a series of 30 rectangular eggs in a single row, whereas the male is characterized by a short rod-like urogenital papilla. Species of the genus Schindleria are likely the smallest marine vertebrates on the planet and S. parva is likely the smallest Schindleria species in the Red Sea. The global diversity of Schindleria is likely underestimated due to the paedomorphic features of this genus. Its fast generation times make it a species-rich genus of high turnover rates, thus potentially highly important for the trophic food webs of coral reefs. Thus, this finding advances knowledge on the biodiversity of the Red Sea, highlights its conservation significance, and contributes towards the understanding of the complexity of the coral-reef fish community.     

A refined method for ovule culture in sugar beet (Beta vulgaris L.)

Induction of gynogenesis through ovule culture is a valuable tool to produce haploid and doubled haploid plants in sugar beet (Beta vulgaris L.). However, there is still large room for refining the method. In this study we investigated the gynogenic response of cultured ovules of three sugar beet genotypes, the effect of the application to inflorescences of different pretreatments with mannitol at 4ºC and with 5-azacytidine and 2,4-D, and the effect of the use of different basal culture media and sucrose concentrations. The response was evaluated in terms of percentages of induction of gynogenesis, embryogenesis and callogenesis, as well as of regenerated plants. We showed that a pretreatment with 0.5 M mannitol at 4 °C for 4 days, and with 50 µM 5-AzaC for 1 h, notably improved the percentage of embryogenesis and plant regeneration. Besides, the use of MS basal medium and 60 g/L sucrose was also found beneficial. This study provides new ways to improve the efficiency of haploid induction and plant regeneration through ovule culture in sugar beet, and is potentially applicable to ovule culture in other crops.

     

microRNA-34b/c on chromosome 11q23 is aberrantly methylated in chronic lymphocytic leukemia

A commonly deleted region in chronic lymphocytic leukemia (CLL) is the 11q22–23 region, which encompasses the ATM gene. Evidence suggests that tumor suppressor genes other than ATM are likely to be involved in CLL with del(11q). A microRNA (miR) cluster including the miR-34b and miR-34c genes is located, among other genes, within the commonly deleted region (CDR) at 11q. Interestingly, these miRs are part of the TP53 network and have been shown to be epigenetically regulated. In this study, we investigated the expression and methylation status of these miRs in a well-characterized cohort of CLL, including cases with/without 11q-deletion. We show that the miR-34b/c promoter was aberrantly hypermethylated in a large proportion of CLL cases (48%, 25/52 cases). miR-34b/c expression correlated inversely to DNA methylation (P = 0.003), and presence of high H3K37me3 further suppressed expression regardless of methylation status. Furthermore, increased miR-34b/c methylation inversely correlated with the presence of 11q-deletion, indicating that methylation and del(11q) independently silence these miRs. Finally, 5-azacytidine and trichostatin A exposure synergistically increased the expression of miR-34b/c in CLL cells, and transfection of miR-34b or miR-34c into HG3 CLL cells significantly increased apoptosis. Altogether, our novel data suggest that miR-34b/c is a candidate tumor suppressor that is epigenetically silenced in CLL.