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91.
92.
Background
With increasing computer power, simulating the dynamics of complex systems in chemistry and biology is becoming increasingly routine. The modelling of individual reactions in (bio)chemical systems involves a large number of random events that can be simulated by the stochastic simulation algorithm (SSA). The key quantity is the step size, or waiting time, τ, whose value inversely depends on the size of the propensities of the different channel reactions and which needs to be re-evaluated after every firing event. Such a discrete event simulation may be extremely expensive, in particular for stiff systems where τ can be very short due to the fast kinetics of some of the channel reactions. Several alternative methods have been put forward to increase the integration step size. The so-called τ-leap approach takes a larger step size by allowing all the reactions to fire, from a Poisson or Binomial distribution, within that step. Although the expected value for the different species in the reactive system is maintained with respect to more precise methods, the variance at steady state can suffer from large errors as τ grows. 相似文献93.
Victoria Levterova Stefan Panaiotov Nadia Brankova Kristin Tankova 《Molecular biotechnology》2010,45(1):34-38
Identification of genetic markers involved in stress response to physical factors or chemical substances in organisms is a
challenging task. Typing of upregulated gene expression due to selective antibacterial pressure is a promising approach in
the search of molecular mechanisms responsible for development of resistance. cDNA-Fluorescent Amplified Fragment Length Polymorphism
(cDNA-FAFLP) strategy was developed and applied in the search of antimycotic drug resistance marker(s) in medically important
fungi as an alternative method to microarray analysis. We compared differential gene expression of two sensitive Candida albicans reference strains (ATCC 10231 and ATCC 60133) and two of their paired resistant to fluconazole and itraconazole mutants.
Resistant mutants Candida albicans
FLC-R, resistant to fluconazole (MIC > 128 μg/ml) and Candida albicans ICZ-R, resistant to itraconazole (MIC > 4 μg/ml) were obtained in subcultures with gradual increase of the antifungal in the culture
medium. cDNA-AFLP profile in both itraconazole resistant mutants showed specific spectrophotometric peaks with 5–6-fold RNA
overexpression product of 500 bp length compared to the sensitive strains. Fluconazole mutants do not reveal RNA level changes
under tested by us typing conditions. These results indicate that the cDNA-FAFLP strategy is a relatively rapid, simple, and
reliable method for simultaneous typing of both constitutive and induced differences in expression of host genes providing
insight into the biological processes involved in response to drugs in bacteria and fungi. Moreover, this methodology could
be tested for typing of the genome response of any organism to physical or chemical stress factors. 相似文献
94.
Rachael V. Gallagher Lesley Hughes Michelle R. Leishman Peter D. Wilson 《Biological invasions》2010,12(12):4049-4063
Potential interactions between climate change and exotic plant invasions may affect areas of high conservation value, such
as land set aside for the protection of endangered species or ecological communities. We investigated this issue in eastern
Australia using species distribution models for five exotic vines under climate regimes for 2020 and 2050. We examined how
projected changes in the distribution of climatically suitable habitat may coincide with the remaining remnants of an endangered
ecological community—littoral rainforests—in this region. The number of known infestations of each weed in tropical, subtropical
and temperate areas was used to assess the likelihood of further expansion into areas projected to provide suitable habitat
under future conditions. Littoral rainforest reserves were consistently predicted to provide bioclimatically suitable habitat
for the five vines examined under both current and future climate scenarios. We explore the consequences and potential strategies
for managing exotic plant invasions in these protected areas in the coming decades. 相似文献
95.
96.
The number of orientation, feeding and social calls emitted by pipistrelle batsPipistrellus pipistrellus Schreber, 1774 andP. pygmaeus Leach, 1825 was recorded throughout the night at eight different sites. Social calls were unaffected by weather variables,
whereas orientation calls and feeding buzzes were both significantly affected by cloud and temperature conditions. The number
of emissions of each call type was significantly different between sites, indicating that the bats used different sites for
different activities. Significant positive correlations between all three combinations of call types occurred only during
the middle of the night, corresponding with the nadir of flying insects. This suggests that bats were engaged in activities
other than feeding at this time, such as territory protection or mate attraction. 相似文献
97.
Background
NOL7 is a candidate tumor suppressor that localizes to a chromosomal region 6p23. This locus is frequently lost in a number of malignancies, and consistent loss of NOL7 through loss of heterozygosity and decreased mRNA and protein expression has been observed in tumors and cell lines. Reintroduction of NOL7 into cells resulted in significant suppression of in vivo tumor growth and modulation of the angiogenic phenotype. Further, NOL7 was observed to localize to the nucleus and nucleolus of cells. However, the mechanisms regulating its subcellular localization have not been elucidated. 相似文献98.
Alexander V. Kirdyanov Eugene A. Vaganov Malcolm K. Hughes 《Trees - Structure and Function》2007,21(1):37-44
We propose a technique for separating the climatic signal which is contained in two tree-ring parameters widely used in dendroclimatology.
The method is based on the removal of the relationship between tree-ring width (TRW) and maximum latewood density (MXD) observed
for narrow tree rings from high latitudes. The new technique is tested on data from three larch stands located along the northern
timberline in Eurasia. Correlations were calculated between the temperatures of pentads (five consecutive days), TRW chronologies
and MXD chronologies calculated according to the standard and proposed methods. The analysis confirms the great importance
of summer temperature for tree radial growth and tree-ring formation. TRW is positively correlated with the temperature of
four to eight pentads (depending on the region) at the beginning of the growth season, but MXD as obtained by the standard
technique is correlated with temperature over a much longer period. For maximum density series from which the relationship
between MXD and TRW has been removed (MXD′), there is a clear correlation with temperatures in the second part of the growing
season. These results are consistent with the known dynamics of tree-ring growth in high latitudes and mechanisms of tree-ring
formation. 相似文献
99.
Thomas Cavalier-Smith 《Biology direct》2010,5(1):7
Background
The transition from prokaryotes to eukaryotes was the most radical change in cell organisation since life began, with the largest ever burst of gene duplication and novelty. According to the coevolutionary theory of eukaryote origins, the fundamental innovations were the concerted origins of the endomembrane system and cytoskeleton, subsequently recruited to form the cell nucleus and coevolving mitotic apparatus, with numerous genetic eukaryotic novelties inevitable consequences of this compartmentation and novel DNA segregation mechanism. Physical and mutational mechanisms of origin of the nucleus are seldom considered beyond the long-standing assumption that it involved wrapping pre-existing endomembranes around chromatin. Discussions on the origin of sex typically overlook its association with protozoan entry into dormant walled cysts and the likely simultaneous coevolutionary, not sequential, origin of mitosis and meiosis. 相似文献100.