Modular antenna of photosystem I in secondary plastids of red algal origin: a <Emphasis Type="Italic">Nannochloropsis oceanica</Emphasis> case study

Photosystem I (PSI) is a multi-subunit integral pigment–protein complex that performs light-driven electron transfer from plastocyanin to ferredoxin in the thylakoid membrane of oxygenic photoautotrophs. In order to achieve the optimal photosynthetic performance under ambient irradiance, the absorption cross section of PSI is extended by means of peripheral antenna complexes. In eukaryotes, this role is played mostly by the pigment–protein complexes of the LHC family. The structure of the PSI-antenna supercomplexes has been relatively well understood in organisms harboring the primary plastid: red algae, green algae and plants. The secondary endosymbiotic algae, despite their major ecological importance, have so far received less attention. Here we report a detailed structural analysis of the antenna-PSI association in the stramenopile alga Nannochloropsis oceanica (Eustigmatophyceae). Several types of PSI-antenna assemblies are identified allowing for identification of antenna docking sites on the PSI core. Instances of departure of the stramenopile system from the red algal model of PSI-Lhcr structure are recorded, and evolutionary implications of these observations are discussed.     

Identification and Characterization of Major Lipid Particle Proteins of the Yeast Saccharomyces cerevisiae

Lipid particles of the yeast Saccharomyces cerevisiae were isolated at high purity, and their proteins were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis. Major lipid particle proteins were identified by mass spectrometric analysis, and the corresponding open reading frames (ORFs) were deduced. In silicio analysis revealed that all lipid particle proteins contain several hydrophobic domains but none or only few (hypothetical) transmembrane spanning regions. All lipid particle proteins identified by function so far, such as Erg1p, Erg6p, and Erg7p (ergosterol biosynthesis) and Faa1p, Faa4p, and Fat1p (fatty acid metabolism), are involved in lipid metabolism. Based on sequence homology, another group of three lipid particle proteins may be involved in lipid degradation. To examine whether lipid particle proteins of unknown function are also involved in lipid synthesis, mutants with deletions of the respective ORFs were constructed and subjected to systematic lipid analysis. Deletion of YDL193w resulted in a lethal phenotype which could not be suppressed by supplementation with ergosterol or fatty acids. Other deletion mutants were viable under standard conditions. Strains with YBR177c, YMR313c, and YKL140w deleted exhibited phospholipid and/or neutral lipid patterns that were different from the wild-type strain and thus may be further candidate ORFs involved in yeast lipid metabolism.     

Contribution of Are1p and Are2p to steryl ester synthesis in the yeast Saccharomyces cerevisiae.

In the yeast Saccharomyces cerevisiae, two acyl-CoA:sterol acyltransferases (ASATs) that catalyze the synthesis of steryl esters have been identified, namely Are2p (Sat1p) and Are1p (Sat2p). Deletion of either ARE1 or ARE2 has no effect on cell viability, and are1are2 double mutants grow in a similar manner to wild-type despite the complete lack of cellular ASAT activity and steryl ester formation [Yang, H., Bard, M., Bruner, D. A., Gleeson, A., Deckelbaum, R. J., Aljinovic, G., Pohl, T. M., Rothstein, R. & Sturley, S. L. (1996) Science 272, 1353-1356; Yu, C., Kennedy, J., Chang, C. C. Y. & Rothblatt, J. A. (1996) J. Biol. Chem. 271, 24157-24163]. Here we show that both Are2p and Are1p reside in the endoplasmic reticulum as demonstrated by measuring ASAT activity in subcellular fractions of are1 and are2 deletion strains. This localization was confirmed by fluorescence microscopy using hybrid proteins of Are2p and Are1p fused to green fluorescent protein (GFP). Lipid analysis of are1 and are2 deletion strains revealed that Are2p and Are1p utilize sterol substrates in vivo with different efficiency; Are2p has a significant preference for ergosterol as a substrate, whereas Are1p esterifies sterol precursors, mainly lanosterol, as well as ergosterol. The specificity towards fatty acids is similar for both isoenzymes. The lack of steryl esters in are1are2 mutant cells is largely compensated by an increased level of free sterols. Nevertheless, terbinafine, an inhibitor of ergosterol biosynthesis, inhibits growth of are1are2 cells more efficiently than growth of wild-type. In a growth competition experiment are1are2 cells grow more slowly than wild-type after several rounds of cultivation, suggesting that Are1p and Are2p or steryl esters, the product formed by these two enzymes, are more important in the natural environment than under laboratory conditions.     

Montmorillonite and Beidellite Intercalated with Tetramethylammonium Cations

Molecular mechanics simulations, combined with X-ray powder diffraction and infrared spectroscopy, have been used in structure analysis of montmorillonite and beidellite intercalated with tetramethylammonium cations. A complex structure analysis provided us with the detailed structure model, including characterization of the disorder, the total sublimation energy and a charge distribution in the structure of intercalates. The calculated basal spacings (14.36 Å for TMA-montmorillonite and 14.12 Å for TMA-beidellite) are in good agreement with the experimental values (14.31 Å for TMA-montmorillonite and 14.147 Å for TMA-beidellite). Both intercalated structures exhibit positional and orientational disorder in the arrangement of TMA cations, and consequently disorder in layer-stacking. In the present work we analyse the effect of octahedral and tetrahedral substitutions in a 2:1 silicate layer on the arrangement of tetramethylammonium (TMA) cations in the interlayer space of montmorillonite and beidellite. The most significant difference between TMA-montmorillonite and TMA-beidellite is in the charge distribution on the TMA cations and silicate layer. The TMA-beidellite structure is highly polarized, the total charge on one TMA cation is +0.167 e^–, while the total charge on the TMA cation in montmorillonite is +0.050 e^–.     

Expression of galectin-1 and galectin-3 in human fetal thyroid gland.

High levels of expression of galectin-1 and galectin-3, the beta-galactoside-binding proteins, have been recently described in malignant thyroid tumors but not in adenomas nor in normal thyroid tissue. However, there are no data about the expression of these galectins during fetal thyroid development. In this study we analyzed immunohistochemically the presence of galectin-1 and galectin-3 in human fetal thyroid glands (16-37 weeks of gestation). Weak to moderate cytoplasmic staining for galectin-1 was observed in follicular cells of all fetal thyroids. Galectin-3 could not be detected in thyroid follicular cells of any fetal thyroid investigated. Both galectins were detected in stromal tissue, but staining for galectin-1 was more intense. The absence of galectin-3 in thyroid cells during fetal development suggests that galectin-3 is expressed de novo during malignant transformation of thyroid epithelium, and that galectin-1 could be considered an oncofetal antigen. The results obtained indicated potential roles for galectin-1 and galectin-3 during the investigated period of human fetal thyroid gland development. Both galectins might participate in developmental processes regarding stromal fetal thyroid tissue organization, whereas galectin-1 might have a function in thyroid epithelium maturation.     

The long-term succession of cladoceran fauna and palaeoclimate forcing: A 14,600-year record from Plešné Lake,the Bohemian Forest

A sediment record of cladoceran remains was analysed in a 543 cm long core from Ple?né jezero (Ple?né Lake), the Bohemian Forest, Czech Republic. The core covered the time period from the Oldest Dryas to the present. Littoral and benthic Cladocera included 11 species of the family Chydoridae while three species (Bosmina longispina, Daphnia cf. pulicaria and D. cf. longispina) lived in the open water. Remains of Alona quadrangularis and Chydrous sphaericus occurred in the oldest sediment layers from the beginning of the Bølling chronozone. Bosmina longispina and Daphnia cf. pulicaria appeared about 400 years later. Inorganic sediment accumulated at a relatively high rate of ～ 90 mg cm^?2 yr^?1 at that time, diluting cladoceran remains and organic matter. Remains of Cladocera accumulated at 0.1 to 0.01 of the Holocene rate, making it difficult to observe effects of climate variation on the species structure of Cladocera in the Late-Glacial. Production of remains increased after warming during the Younger Dryas-Preboreal transition at ～11.6 kyr BP, and the proportion of littoral species increased. The most important change in cladoceran fauna occurred at ～10.5 kyr BP and culminated with afforestation of the catchment around 10.3 kyr BP. The domaination of Bosmina longispina lasted for ～250 years. The afforestation occurred concurrently with a decrease in lake water pH. Bosmina longispina and Daphnia cf. pulicaria disappeared, production of cladoceran remains decreased, but biodiversity increased. Planktonic Cladocera were represented by Daphnia cf. longispina during most of the rest of the Holocene. The production of Cladocera never reached the Preboreal level. Since ～ 5 cal. kyr BP, the inferred pH continuously decreased. The final decline was likely caused by cooling during the Little Ice Age and by sulphur emissions from ore smelting. The recent acidification of lake water and impoverishment of aquatic fauna was brought about by emissions of sulphur and nitrogen compounds in the 20^th century.     

Changes of Endogenous Antioxidant Enzymes during Ischemic Tolerance Acquisition

The purpose of this study was to investigate the role of superoxide dismutase (SOD) and catalase (CAT) in brain ischemic tolerance induced by ischemic preconditioning. Forebrain cerebral ischemia was induced in rat by four vessel occlusion. The activities of the antioxidant enzymes CuZn-SOD, Mn-SOD and CAT were measured in the hippocampus, striatum and cortex after 5 min of ischemia used as a preconditioning and subsequent reperfusion, by spectrophotometric methods. In all ischemia-reperfusion groups (5 h, 1 and 2 days of reperfusion), CuZn-SOD activities were found to be increased if compared to the sham operated controls. The increase was significant (P < 0.05) in all reperfusion groups, particularly after 5 h of reperfusion (3 times) in all studied brain regions; the largest increase was detected in the more vulnerable hippocampus and striatum. Very similar changes were found in Mn-SOD activity. The activity of CAT was increased too, but reached the peak of postischemic activity 24 h after ischemia. Our attempt to understand the mechanisms of increased SOD and CAT activities by application of protein synthesis inhibitor cycloheximide showed that this increase was caused by de novo synthesis of enzymes during first hours after ischemia. Our findings indicate that both major endogenous antioxidant enzymes SOD and CAT are synthesized as soon as 5 h after ischemia. In spite of significant upregulation of these enzymes a large number of neurons in selectively vulnerable CA1 region of hippocampus undergoes to neurodegeneration within 7 days after ischemia.     

Variabilität und Verbreitung desAceri-Carpinetum in der Tschechischen Sozialistischen Republik

Die phytozönologische Variabilität und die Verbreitung desAceri-Carpinetum wurden aufgrund von Analyse und Synthese eines umfangreichen Aufnahmenmaterials festgestellt. DasAceri-Carpinetum umfasst Schuttwälder der Eichen-Hainbuchenwald-Stufe auf das gegliederte Relief der Fluss- und Bachtäler gebunden; es ist auf ökologisch adäquaten Standorten des Hochlandes ?eská vyso?ina (Böhmisches Hochland) und des Aussenkarpaten-Systems verbreitet. Diese Assoziation wird in vier Subassoziationen gegliedert, u. zw.Aceri-Carpinetum aegopodietosum, Aceri-Carpinetum aconitetosum vulpariae, Aceri-Carpinetum abietetosum undAceri-Carpinetum festucetosum altissimae.