Ablation of steroid receptor coactivator-3 resembles the human CACT metabolic myopathy

Oxidation of lipid substrates is essential for survival in fasting and other catabolic conditions, sparing glucose for the brain and other glucose-dependent tissues. Here we show Steroid Receptor Coactivator-3 (SRC-3) plays a central role in long chain fatty acid metabolism by directly regulating carnitine/acyl-carnitine translocase (CACT) gene expression. Genetic deficiency of CACT in humans is accompanied by a constellation of metabolic and toxicity phenotypes including hypoketonemia, hypoglycemia, hyperammonemia, and impaired neurologic, cardiac and skeletal muscle performance, each of which is apparent in mice lacking SRC-3 expression. Consistent with human cases of CACT deficiency, dietary rescue with short chain fatty acids drastically attenuates the clinical hallmarks of the disease in mice devoid of SRC-3. Collectively, our results position SRC-3 as a key regulator of β-oxidation. Moreover, these findings allow us to consider platform coactivators such as the SRCs as potential contributors to syndromes such as CACT deficiency, previously considered as monogenic.     

Nitrogen limitation of phytoplankton in a Spanish karst lake with a deep chlorophyll maximum: a nutrient enrichment bioassay approach

An in vitro nutrient addition bioassay was performed to testthe relative inorganic nitrogen (N) and phosphorus (P) limitationof phytoplankton in a Spanish karst lake (El Tejo) during thelast part of the stratification period, when nutrient limitationis most pronounced. Nutrient deficiency was tested in samplesfrom three different layers of the lake: the epilimnion, metalimnionand oxic hypolimnion. Nitrogen additions, either without orcombined with P, increased phytoplankton growth in all threestrata, compared with controls or P treatments. This showedthat N was the nutrient limiting phytoplankton growth in latesummer–early fall. Since both hypolimnetic diffusion andgroundwater fluxes of N-rich waters into the lake are much reducedduring summer, N becomes the limiting nutrient as stratificationadvances. We suggest that in this Mediterranean area with lowatmospheric deposition of anthropogenic N and in lakes relativelyfree of surface run-off, nutrient supply by atmospheric depositionmight be a key factor in controlling nutrient deficiency forphytoplankton growth.     

Screening of cassava varieties for resistance to root-knot nematodes

Twenty cassava cultivars were screened in micro-plot experiments in the green house of Institute of Agricultural Research and Training, Obafemi Awolowo University, Moor Plantation, Ibadan for root-knot nematode resistance. Four weeks after planting, each plant was inoculated with 5000 eggs of Meloidogyne incognita. There were three replications per cultivar. The plants were uprooted and assessed for resistance after 60 days of inoculation. Assessment of plant damaged was determined by gall index and reproductive factor. Based on host status rating, 3 cultivars were found to be resistant, 4 cultivars were tolerant, 10 cultivars ere susceptible while .3 cultivars were hypersusceptible. All the screened cultivars are resistant to cassava mosaic disease and other major pests of cassava like bacterial disease, anthracnose disease, cassava green mite and cassava mealy bug. They are all high yielding, suitable for food, industry and livestock feed.     

Mesocosm experiments on nutrient and fish effects on shallow lake food webs in a Mediterranean climate

1. Nutrient and fish manipulations in mesocosms were carried out on food‐web interactions in a Mediterranean shallow lake in south‐east Spain. Nutrients controlled biomass of phytoplankton and periphyton, while zooplankton, regulated by planktivorous fish, influenced the relative percentages of the dominant phytoplankton species. 2. Phytoplankton species diversity decreased with increasing nutrient concentration and planktivorous fish density. Cyanobacteria grew well in both turbid and clear‐water states. 3. Planktivorous fish increased concentrations of soluble reactive phosphorus (SRP). Larger zooplankters (mostly Ceriodaphnia and copepods) were significantly reduced when fish were present, whereas rotifers increased, after fish removal of cyclopoid predators and other filter feeders (cladocerans, nauplii). The greatest biomass and diversity of zooplankton was found at intermediate nutrient levels, in mesocosms without fish and in the presence of macrophytes. 4. Water level decrease improved underwater light conditions and favoured macrophyte persistence. Submerged macrophytes (Chara spp.) outcompeted algae up to an experimental nutrient loading equivalent to added concentrations of 0.06 mg L^?1 PO₄‐P and 0.6 mg L^?1 NO₃‐N, above which an exponential increase in periphyton biomass and algal turbidity caused characean biomass to decline. 5. Declining water levels during summer favoured plant‐associated rotifer species and chroococcal cyanobacteria. High densities of chroococcal cyanobacteria were related to intermediate nutrient enrichment and the presence of small zooplankton taxa, while filamentous cyanobacteria were relatively more abundant in fishless mesocosms, in which Crustacea were more abundant, and favoured by dim underwater light. 6. Benthic macroinvertebrates increased significantly at intermediate nutrient levels but there was no relationship with planktivorous fish density. 7. The thresholds of nutrient loading and in‐lake P required to avoid a turbid state and maintain submerged macrophytes were lower than those reported from temperate shallow lakes. Mediterranean shallow lakes may remain turbid with little control of zooplankton on algal biomass, as observed in tropical and subtropical lakes. Nutrient loading control and macrophyte conservation appear to be especially important in these systems to maintain high water quality.     

Cladoceran assemblages in a mineralization gradient

Cladoceran assemblages were studied in littoral samples from 44 water bodies in Central Spain, showing great differences in salinity and permanence of water. Principal component analyses (PCA) were performed with data on cladoceran relative abundances to identify the main groups of species. Five main groups of species were found, defining the following types of environments: (I) Small but deep hard water lakes (II) permanent but shallow hard water lakes fed by surface springs, rich in macrophytes (III) ephemeral and shallow soft waters lakes (IV) subsaline and hyposaline lakes in their lower range, specially the permanent ones and (V) saline lakes (salinities>6 mg l^–1) subject to short or long periods of dryness. The main species constituting these groups were: Group (I): Acroperus neglectus, Alona guttata, Pleuroxus truncatus, Daphnia longispina; group II: Phrixura leei, Latonura rectirostris, Eurycercus lamellatus; Alonella excisa, Daphnia pulicaria; group III: Ephemeroporus phintonicus, Macrothrix rosea, Moina micrura; group IV: Alona rectangula, Ceriodaphnia reticulata, Tetrocephala ambigua, Diaphanosoma mongolianum; group V: Alona salina, Pleuroxus letourneuxi, Dunhevedia crassa, Moina brachiata, Daphnia magna and Daphnia mediterranea. Sample scores from PCA extracted from the correlation matrix of cladoceran proportions were correlated with limnological measurements. Significant correlations with salinity, alkalinity anions and cations indicate that salinity is an important factor in the distribution of the species. However, species assemblages also reflect other factors, such as temporality and littoral development.     

Fish and nutrient enrichment effects on rotifers in a Mediterranean shallow lake: a mesocosm experiment

A mesocosm experiment was conducted “in situ” in a Chara dominated shallow lake near Valencia (Spain) to study top–down and bottom–up effects on rotifers by means of nutrient and fish additions. Both processes were important in determining rotifer abundance, biomass and diversity. A total of 36 mesocoms were established with triplicate treatment combinations of three fish levels (from no fish to 45 individuals of Gambusia holbrooki males) and four nutrient enrichment levels (from no additions to 10 mg l⁻¹ nitrate-N and 1 mg l⁻¹ phosphate-P). The main effect was a notable increase of planktonic and plant associated rotifers densities with fish. Rotifers benefited from mosquitofish predation on microcrustaceans and chironomids. The results showed a marked negative relationship between rotifer and cyclopoid abundances, indicating the importance of the predatory pressure of cyclopoids on rotifers. Effects on rotifer diversity were also evident, in general rotifer diversity decreased with nutrients and increased with fish. The effects of nutrients analysed at species level showed two contrasting density responses: an increase or a decrease with nutrients, which levelled off at high nutrient concentrations. High-level nutrient additions (from 5 mg l⁻¹ nitrate-N and 0.5 mg l⁻¹ phosphate-P) induced a switch to a turbid state with macrophyte disappearance. Most planktonic rotifer species, as well as plant associated ones, diminished when the turbid state was well established, especially in the mesocosms without fish. In the turbid mesocosms, relative abundance of plant-associated rotifers (as a whole) was higher than that of planktonic rotifers. The changes in rotifer species composition after the switch from a clear to a turbid water state are also described. Species of the genus Anuraeopsis, Trichocerca and Hexarthra, dominant in the clear water state, practically disappeared in the turbid water state, in which Proalides tentaculatus and Lecane nana were the main species. Guest editors: S. S. S. Sarma, R. D. Gulati, R. L. Wallace, S. Nandini, H. J. Dumont & R. Rico-Martínez Advances in Rotifer Research     

Cytomorphologic characteristics, differential diagnosis and utility during intraoperative consultation for medulloblastoma

OBJECTIVE: To study the cytologic findings that differentiate LC/A and non-LC/A (NLCA) types. STUDY DESIGN: Cytologic smears, prepared during intraoperative consultation (IOC) of 43 cases of pure histologic type, defined as > 80% of the tumor being composed of 1 of 3 major histologic types--classic, nodular and LC/A--were reviewed and graded semiquantitatively (0-3+) for 14 cytologic features: cellularity, nuclear streaming, endothelial proliferation, necrosis, lymphoglandular bodies, rosette formation, apoptosis, nuclear cannibalism, pleomorphism, macronucleoli, paranuclear inclusions, cytoplasmic vacuoles, mitoses and multinucleation. The grades were compared between the 2 histologic groups, LC/A vs. NLCA, as well as between the preparation methods, squash vs. touch (TP). Values of p < 0.05 were accepted as statistically significant. RESULTS: "Cell wrapping" (cannibalism), pleomorphism, macronucleoli, apoptosis, mitoses and cytoplasmic vacuoles were more significantly observed in LC/A than in NLCA. CONCLUSION: Intraoperative cytologic evaluation of these cytologic parameters allows distinction between LC/A and NLCA, which can be prognostically useful during IOC. Rosette formation, the histologic hallmark of classic medulloblastoma, is not a discriminator. Given the fewer artifacts and sufficient cellularity, TP is the preferred method of cytologic preparation.     

Spillway-Induced Salmon Head Injury Triggers the Generation of Brain αII-Spectrin Breakdown Product Biomarkers Similar to Mammalian Traumatic Brain Injury

Recent advances in biomedical research have resulted in the development of specific biomarkers for diagnostic testing of disease condition or physiological risk. Of specific interest are αII-spectrin breakdown products (SBDPs), which are produced by proteolytic events in traumatic brain injury and have been used as biomarkers to predict the severity of injury in humans and other mammalian brain injury models. This study describes and demonstrates the successful use of antibody-based mammalian SBDP biomarkers to detect head injury in migrating juvenile Chinook salmon (Oncorhynchus tshawytscha) that have been injured during passage through high-energy hydraulic environments present in spillways under different operational configurations. Mortality and injury assessment techniques currently measure only near-term direct mortality and easily observable acute injury. Injury-based biomarkers may serve as a quantitative indicator of subacute physical injury and recovery, and aid hydropower operators in evaluation of safest passage configuration and operation actions for migrating juvenile salmonids. We describe a novel application of SBDP biomarkers for head injury for migrating salmon. To our knowledge, this is the first documented cross-over use of a human molecular biomarker in a wildlife and operational risk management scenario.     

Chitinase genes revealed and compared in bacterial isolates, DNA extracts and a metagenomic library from a phytopathogen-suppressive soil

Soil that is suppressive to disease caused by fungal pathogens is an interesting source to target for novel chitinases that might be contributing towards disease suppression. In this study, we screened for chitinase genes, in a phytopathogen-suppressive soil in three ways: (1) from a metagenomic library constructed from microbial cells extracted from soil, (2) from directly extracted DNA and (3) from bacterial isolates with antifungal and chitinase activities. Terminal restriction fragment length polymorphism (T-RFLP) of chitinase genes revealed differences in amplified chitinase genes from the metagenomic library and the directly extracted DNA, but approximately 40% of the identified chitinase terminal restriction fragments (TRFs) were found in both sources. All of the chitinase TRFs from the isolates were matched to TRFs in the directly extracted DNA and the metagenomic library. The most abundant chitinase TRF in the soil DNA and the metagenomic library corresponded to the TRF¹⁰³ of the isolate Streptomyces mutomycini and/or Streptomyces clavifer . There were good matches between T-RFLP profiles of chitinase gene fragments obtained from different sources of DNA. However, there were also differences in both the chitinase and the 16S rRNA gene T-RFLP patterns depending on the source of DNA, emphasizing the lack of complete coverage of the gene diversity by any of the approaches used.     

Responses of phytoplankton to fish predation and nutrient loading in shallow lakes: a pan-European mesocosm experiment

1. The impacts of nutrients (phosphorus and nitrogen) and planktivorous fish on phytoplankton composition and biomass were studied in six shallow, macrophyte‐dominated lakes across Europe using mesocosm experiments. 2. Phytoplankton biomass was more influenced by nutrients than by densities of planktivorous fish. Nutrient addition resulted in increased algal biomass at all locations. In some experiments, a decrease was noted at the highest nutrient loadings, corresponding to added concentrations of 1 mg L^?1 P and 10 mg L^?1 N. 3. Chlorophyll a was a more precise parameter to quantify phytoplankton biomass than algal biovolume, with lower within‐treatment variability. 4. Higher densities of planktivorous fish shifted phytoplankton composition toward smaller algae (GALD < 50 μm). High nutrient loadings selected in favour of chlorophytes and cyanobacteria, while biovolumes of diatoms and dinophytes decreased. High temperatures also may increase the contribution of cyanobacteria to total phytoplankton biovolume in shallow lakes.