The association between sleep pattern and nutrients intake pattern in healthy overweight and obese adults

Few studies have investigated the association between sleep pattern and nutrient intake pattern. This study was conducted to examine the associations between patterns of nutrient intake and sleep pattern. 108 overweight and obese individuals were recruited to participate in the present cross-sectional study. Participant underwent sleep evaluation through ActiGraph. A 3-day food dietary record was obtained to estimate food intake for each participant. The average of total sleep duration was 7.07 h, average of wake after sleep onset was 0.43 h, average of sleep latency was 0.14 h, and finally, average of sleep efficacy was 93.66%. Moreover, based on principal component analysis, six nutrient intake patterns were identified: the first and second patterns accounting for 53.88% of the total variance and the third and fourth patterns made up 13.6% of the total variance. Totally, the six patterns constitute 74.8% of the total variance. Our results showed that the second nutrient pattern had a negative correlation with total sleep time (P = 0.03); it was positively correlated with sleep latency (P = 0.004). The sixth nutrient pattern was negatively associated with total sleep time (P = 0.007). It was observed that higher intake of the fourth pattern had a negative correlation with total sleep time (P = 0.03). Higher intake of the fifth pattern was positively associated with sleep latency (P = 0.05). In summary, we found that nutrient patterns are correlated with sleep pattern.

     

Exploration,antifungal and antiaflatoxigenic activity of halophilic bacteria communities from saline soils of Howze-Soltan playa in Iran

In the present study, halophilic bacteria communities were explored in saline soils of Howze-Soltan playa in Iran with special attention to their biological activity against an aflatoxigenic Aspergillus parasiticus NRRL 2999. Halophilic bacteria were isolated from a total of 20 saline soils using specific culture media and identified by 16S rRNA sequencing in neighbor-joining tree analysis. Antifungal and antiaflatoxigenic activities of the bacteria were screened by a nor-mutant A. parasiticus NRRL 2999 using visual agar plate assay and confirmed by high-performance liquid chromatography. Among a total of 177 halophilic bacteria belonging to 11 genera, 121 isolates (68.3%) inhibited A. parasiticus growth and/or aflatoxin production. The most potent inhibitory bacteria of the genera Bacillus, Paenibacillus and Staphylococcus were distributed in three main phylogenetic clusters as evidenced by 16S rRNA sequence analysis. A. parasiticus growth was inhibited by 0.7–92.7%, while AFB₁ and AFG₁ productions were suppressed by 15.1–98.9 and 57.0–99.6%, respectively. Taken together, halophilic bacteria identified in this study may be considered as potential sources of novel bioactive metabolites as well as promising candidates to develop new biocontrol agents for managing toxigenic fungi growth and subsequent aflatoxin contamination of food and feed in practice.

     

Localized Surface Plasmon Resonance (LSPR) Detection of Diphtheria Toxoid Using Gold Nanoparticle-Monoclonal Antibody Conjugates

Plasmonics - Detection of diphtheria toxin (DT) which is produced by Corynebacterium diphtheria, a zoonotic pathogen and a leading cause of diphtheria, is the critical step in the clinical...     

In silico assessment of new progesterone receptor inhibitors using molecular dynamics: a new insight into breast cancer treatment

Nowadays, breast cancer is one of the most widespread malignancies in women, and the second leading cause of cancer death among women. The progesterone receptor (PR) is one of the treatment targets in breast cancer, and can be blocked with selective progesterone receptor modulators (SPRMs). Since administration of chemical drugs can cause serious side effects, and patients, especially those undergoing long-term treatment, can suffer harmful consequences, there is an urgent need to discover novel potent drugs. Large-scale structural diversity is a feature of natural compounds. Accordingly, in the present study, we selected a library of 20,000 natural compounds from the ZINC database, and screened them against the PR for binding affinity and efficacy. In addition, we evaluated the pharmacodynamics and ADMET properties of the compounds and performed molecular docking. Moreover, molecular dynamics (MD) simulation was carried out in order to examine the stability of the protein. In addition, principal component analysis (PCA) was performed to study the motions of the protein. Finally, the MMPBSA method was applied in order to estimate the binding free energy. Our docking results reveal that compounds ZINC00936598, ZINC00869973 and ZINC01020370 have the highest binding energy into the PR binding site, comparable with that of Levonorgestrel (positive control). Moreover, RMSD, RMSF, Rg and H-bond analysis demonstrate that the lead compounds preserve stability in complex with PR during simulation. Our PCA analysis results were in accordance with MD results and the binding free energies support the docking results. This study paves the way for discovery of novel drugs from natural sources and with optimal efficacy, targeting the PR.

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Graphical Abstract The binding mode of new progesterone receptor inhibitors.

     

Are Amphipathic Asymmetric Peptides Ubiquitous Structures for Membrane Destabilisation?

The fusion of some viruses (SIV, BLV, etc) to host cells implicates short fragments of the fusion protein that are asymmetric amphipathic helices in molecular modelling. The tilted orientation of these fragments at a water/lipid interface is directly related to their fusogenic capacity. On this basis, we have searched for fragments of sequences corresponding to "viral fusion peptides" in other proteins. We have developed a strategy to detect them from primary sequences. Many candidates were detected, especially in transmembrane areas of membranous proteins, in signal sequences and in globular proteins. We suggest that they are involved in the dynamics of lipid-protein interactions     

An annotated checklist of the Anopheles mosquitoes (Diptera: Culicidae) in Iran.

An annotated checklist of the Anopheles mosquitoes in Iran is provided. The list is based on data contained in Iranian manuals and reports and information published elsewhere. Supplementary information is provided for 24 species.     

Pestiferous nature, resting sites, aggregation, and host-seeking behavior of the eye fly Siphunculina funicola (Diptera: Chloropidae) in Thailand.

Species of eye flies and eye gnats (Diptera: Chloropidae) are severe and persistent pests of man, domestic and wild animals, and potential vectors of pathogens. The species prevailing in the Oriental region belong to the genus Siphunculina, while those in the Neotropic and Nearctic regions belong to Liohippelates and Hippelates. These are small insects of 1-2 mm that feed on wounds, lacerations, scratches, and mucous membranes of man and higher animals. One species, Siphunculina funicola, commonly known as the Oriental eye fly, is considered the most anthropophilic in the genus, with potential involvement in the spread and mechanical transmission of infectious agents to humans and animals. Very little is known about the biology, prevalence, host-seeking, and aggregation behavior of this species in South and Southeast Asia. We initiated studies on biological aspects of this potential vector and human pest in central Thailand. The most significant findings of our study were the aggregation behaviors of S. funicola, that both sexes attack hosts, and that males outnumbered females attacking humans, dogs, and other domestic animals. They feed on wounds, scabs, lacerations, eyes, and mucous membranes. They hover around and feed on hosts during the daylight hours when host-seeking activities are more pronounced at temperatures above 25-27 degrees C under calm conditions. We noted that large masses of males and females aggregated on a variety of hanging objects such as strings, trailings, electrical lines, decorations, ropes, twines, abandoned cob webs, clothes hangers, and other hanging substrates in open shade of structures and dwellings. This behavior of eye flies brings them closer to human and animal hosts. In these aggregations, both males and females were present, with mating pairs frequently noted. In the aggregations, about 37% of the females had fully developed eggs in the rainy season, but only <1-3.6% were gravid in the hot and dry season. The average number of eggs per female was generally 42 to 44.     

Untangling influences of hydrophobicity on protein sequences and structures

We perform a statistical analysis of solvent accessibility and hydrophobicity profiles of a representative set of proteins. The joint probability distribution is well fitted to a multivariable Gaussian, which takes a relatively simple form when expressed in terms of the Fourier transforms of the profiles. This allows us to quantify the asymmetric manner by which these profiles influence each other. For example, the α‐helix periodicity in sequence hydrophobicity is dictated by the solvent accessibility of structures, and not vice versa, possibly indicating the faster evolution of sequences compared to structures. The decorrelated hydrophobicity and solvent accessibility profiles show distinct behaviors at long periods, where sequence hydrophobicity fluctuates less, while solvent accessibility fluctuates more than average. The correlations between the two profiles can be interpreted as the Boltzmann weight of the solvation energy at room temperature, consistent with earlier observations. Proteins 2006. © 2005 Wiley‐Liss, Inc.