Mechanism of adenylate kinase. Structural and functional demonstration of arginine-138 as a key catalytic residue that cannot be replaced by lysine

Replacement of the arginine-138 of adenylate kinase (AK) by lysine or methionine resulted in a decrease in kcat by a factor of 10(4), increases in Km by a factor of 10-20, and relatively little changes in dissociation constants. Proton nuclear magnetic resonance (NMR) studies were then undertaken to obtain structural information for quantitative interpretation of the kinetic data. Since the lysine mutant (R138K) represents a conservative mutation with surprisingly large effects on kinetics, structural studies were focused on the wild type (WT) and R138K. The results and conclusions are summarized as follows: (i) The aromatic spin systems of WT and R138K were assigned from total correlated spectroscopy (TOCSY). Comparison of the chemical shifts of aromatic protons, one-dimensional spectra, TOCSY, and nuclear Overhauser enhanced spectroscopy (NOESY) indicated that the conformation of R138K was almost unperturbed relative to that of WT. Thus Arg-138 is not important for the tertiary structure. (ii) Proton NMR titrations with AMP and MgATP suggested that substrate binding affinities and substrate-induced conformational changes are nearly identical between WT and R138K. Thus arginine-138 should not be involved in stabilizing the first substrate in the binary complex. (iii) Notable differences were observed between the proton NMR spectra of the WT and R138K complexes with the reaction mixture, which agrees with the perturbation in the Km values of R138K. The differences were analyzed in detail by using a "static reaction mixture'--p1, p5-bis(5'-adenosyl)pentaphosphate (MgAP5A). The aromatic spin systems of WT + MgAP5A and R138K + MgAP5A were partially assigned from various two-dimensional spectra.(ABSTRACT TRUNCATED AT 250 WORDS)     

乳粉中嗜热菌污染研究进展

嗜热菌是乳粉中的常见污染菌,是影响乳粉品质的一个重要因素。本文综述乳粉中嗜热菌的种类、污染源对乳品工业的危害及其控制手段的研究进展,为国内相关领域研究提供参考。     

粤北南岭大宝山矿流域山水林田湖草修复阻力与优先级分析

遵循“防源、控流、治汇”理念,以粤北南岭大宝山矿区作为风险源,以所在流域为研究区,分析研究区主要阻力因素,采用最小累积阻力模型建立区域生态阻力面;利用Jenks自然断点法,分析生态修复优先级,提出分区治理重点和对策。研究结果表明：研究区综合阻力系数处于9-32之间,各评价指标的阻力面空间分布格局相似,其阻力值呈现出东南部大,西北部小的空间格局;长期的矿业开采污染了流域生态环境,且距离矿区越近的区域生态修复的优先性越高。将研究区分为4个优先级区,各区修复优先性依次为Ⅰ区 > Ⅱ区 > Ⅲ区 > Ⅳ区。Ⅰ区重点在于治水,提高pH、降低重金属有效态含量和增加地表植被覆盖度。Ⅱ区重点在于河流治理与治土,确保污染减排,增强拦泥库的废水调节。Ⅲ区、Ⅳ区核心在治土,逐步改善土壤条件。研究结果为修复项目在时空尺度上落地和科学治理提供科学依据。     

Mitogenomes provide new insights of evolutionary history of Boreheptagyiini and Diamesini (Diptera: Chironomidae: Diamesinae)

Mitogenomes have been widely used for phylogenetic reconstruction of various Dipteran groups, but specifically for chironomid, they have not been carried out to resolve the relationships. Diamesinae (Diptera: Chironomidae) are important bioindicators for freshwater ecosystem monitoring, but its evolutionary history remains uncertain for lack of information. Here, coupled with one previously published and 30 new mitogenomes of Diamesinae, we carried out comparative mitogenomic analysis and phylogenetic analysis. Mitogenomes of Diamesinae were conserved in structure, and all genes arranged in the same order as the ancestral insect mitogenome. All protein‐coding genes in Diamesinae were under stronger purifying selection than those of other nonbiting midge species, which may exhibit signs of adaptation to life at cold living conditions. Phylogenetic analyses strongly supported the monophyly of Diamesinae, with Boreheptagyiini deeply nested within Diamesini. In addition, phylogenetic relationship of selected six genera was resolved, except Sympotthastia remained unstable. Our study revealed that the mitogenomes of Diamesinae are highly conserved, and they are practically useful for phylogenetic inference.     

SARS-CoV-2 envelope protein causes acute respiratory distress syndrome (ARDS)-like pathological damages and constitutes an antiviral target

Cytokine storm and multi-organ failure are the main causes of SARS-CoV-2-related death. However, the origin of excessive damages caused by SARS-CoV-2 remains largely unknown. Here we show that the SARS-CoV-2 envelope (2-E) protein alone is able to cause acute respiratory distress syndrome (ARDS)-like damages in vitro and in vivo. 2-E proteins were found to form a type of pH-sensitive cation channels in bilayer lipid membranes. As observed in SARS-CoV-2-infected cells, heterologous expression of 2-E channels induced rapid cell death in various susceptible cell types and robust secretion of cytokines and chemokines in macrophages. Intravenous administration of purified 2-E protein into mice caused ARDS-like pathological damages in lung and spleen. A dominant negative mutation lowering 2-E channel activity attenuated cell death and SARS-CoV-2 production. Newly identified channel inhibitors exhibited potent anti-SARS-CoV-2 activity and excellent cell protective activity in vitro and these activities were positively correlated with inhibition of 2-E channel. Importantly, prophylactic and therapeutic administration of the channel inhibitor effectively reduced both the viral load and secretion of inflammation cytokines in lungs of SARS-CoV-2-infected transgenic mice expressing human angiotensin-converting enzyme 2 (hACE-2). Our study supports that 2-E is a promising drug target against SARS-CoV-2.Subject terms: Cell death, Molecular biology     

Rapid improvement of rice eating and cooking quality through gene editing toward glutelin as target

Rice eating and cooking quality(ECQ) is a major concern of breeders and consumers, determining market competitiveness worldwide. Rice grain protein content(GPC) is negatively related to ECQ,making it possible to improve ECQ by manipulating GPC. However, GPC is genetically complex and sensitive to environmental conditions; therefore, little progress has been made in traditional breeding for ECQ. Here, we report that CRISPR/Cas9-mediated knockout of genes encoding the grain storage protein gluteli...     

充气和搅动对球形棕囊藻生长及囊体形成的影响

球形棕囊藻生活史中包含游离单细胞和球形囊体两种生活形态,但是实验室中培养的球形棕囊藻经常无法形成囊体。研究通过向培养基中泵入过滤空气,以及给培养基提供不同程度的搅动,研究了充气和搅动对球形棕囊藻生长及囊体形成的影响。充气和搅动均显著提高了囊体的数量,并且提高了囊体内细胞的生长速率。但是充气对于囊体直径及囊体内细胞密度并无显著影响。搅动则明显的提高了囊体直径和囊体内细胞数量。然而,尽管充气以及搅动有利于球形棕囊藻囊体的形成,但是培养的囊体直径依然小于自然海区中囊体的大小。     

哺乳动物毛被传热性能及其影响因素

毛被能够加强或减弱动物向周围环境的热量散失,毛被的形态结构和颜色是传热性能的决定因素,其传热过程往往是传导、对流和辐射3个过程的耦合。以往研究发现环境因子中,风可增加机体向环境中的散热速率,且散失量与风速正相关,且动物通过调节在风场中的姿态来适应不同风向。动物体与环境间的温差是影响散热速率的另一因素,不同环境中的动物通过改变毛被结构来适应温差变化。毛被含水率上升会引起导热和蒸发冷却作用加强,动物通过行为或毛被结构变化来调节毛被含水率。毛色决定毛被吸收和反射热辐射的能力。毛被传热性能直接把动物的生理特点与环境因子关联起来,这对揭示动物的适应、进化都具有重要意义。同时提出,毛被结构和传热性能的研究还有助于仿生学意义的挖掘。因此,今后应重点在毛被结构和物理性能、研究技术与方法以及毛被生物学和仿生学意义等方面开展研究。