Synonymous Codon Usage Bias in Plant Mitochondrial Genes Is Associated with Intron Number and Mirrors Species Evolution

Synonymous codon usage bias (SCUB) is a common event that a non-uniform usage of codons often occurs in nearly all organisms. We previously found that SCUB is correlated with both intron number and exon position in the plant nuclear genome but not in the plastid genome; SCUB in both nuclear and plastid genome can mirror the evolutionary specialization. However, how about the rules in the mitochondrial genome has not been addressed. Here, we present an analysis of SCUB in the mitochondrial genome, based on 24 plant species ranging from algae to land plants. The frequencies of NNA and NNT (A- and T-ending codons) are higher than those of NNG and NNC, with the strongest preference in bryophytes and the weakest in land plants, suggesting an association between SCUB and plant evolution. The preference for NNA and NNT is more evident in genes harboring a greater number of introns in land plants, but the bias to NNA and NNT exhibits even among exons. The pattern of SCUB in the mitochondrial genome differs in some respects to that present in both the nuclear and plastid genomes.     

Metabolomic profiling to identify potential serum biomarkers for schizophrenia and risperidone action

Despite recent advances in understanding the pathophysiology of schizophrenia and the mechanisms of antipsychotic drug action, the development of biomarkers for diagnosis and therapeutic monitoring in schizophrenia remains challenging. Metabolomics provides a powerful approach to discover diagnostic and therapeutic biomarkers by analyzing global changes in an individual's metabolic profile in response to pathophysiological stimuli or drug intervention. In this study, we performed gas chromatography-mass spectrometry based metabolomic profiling in serum of unmedicated schizophrenic patients before and after an 8-week risperidone monotherapy, to detect potential biomarkers associated with schizophrenia and risperidone treatment. Twenty-two marker metabolites contributing to the complete separation of schizophrenic patients from matched healthy controls were identified, with citrate, palmitic acid, myo-inositol, and allantoin exhibiting the best combined classification performance. Twenty marker metabolites contributing to the complete separation between posttreatment and pretreatment patients were identified, with myo-inositol, uric acid, and tryptophan showing the maximum combined classification performance. Metabolic pathways including energy metabolism, antioxidant defense systems, neurotransmitter metabolism, fatty acid biosynthesis, and phospholipid metabolism were found to be disturbed in schizophrenic patients and partially normalized following risperidone therapy. Further study of these metabolites may facilitate the development of noninvasive biomarkers and more efficient therapeutic strategies for schizophrenia.     

Trypsin immobilization by direct adsorption on metal ion chelated macroporous chitosan-silica gel beads

Silica gel bead coated with macroporous chitosan layer (CTS-SiO₂) was prepared, and the metal immobilized affinity chromatographic (IMAC) adsorbents could be obtained by chelating Cu²⁺, Zn²⁺, Ni²⁺ ions, respectively on CTS-SiO₂, and trypsin could be adsorbed on the IMAC adsorbent through metal–protein interaction forces. Batch adsorption experiments show that adsorption capacity for trypsin on these IMAC adsorbent variated with change of pH. The maximal adsorption reached when the solution was in near neutral pH in all three IMAC adsorbents. Adsorption isothermal curve indicated that maximal adsorption capacity could be found in the Cu²⁺-CTS-SiO₂ with the value of 4980 ± 125 IU g⁻¹ of the adsorbent, while the maximal adsorption capacity for trypsin on Zn²⁺ and Ni²⁺ loaded adsorbent was 3762 ± 68 IU g⁻¹ and 2636 ± 53 IU g⁻¹, respectively. Trypsin immobilized on the IMAC beads could not be desorbed by water, buffer and salt solution if the pH was kept in the range of 5–10, and could be easily desorbed from the IMAC beads by acidic solution and metal chelating species such as EDTA and imidazole. The effect of chelated metal ions species on CTS-SiO₂ beads on the activity and stability of immobilized trypsin was also evaluated and discussed. Trypsin adsorbed on Zn-IMAC beads retained highest amount of activity, about 78% of total activity could be retained. Although the Cu-IMAC showed highest affinity for trypsin, only 25.4% of the calculated activity was found on the beads, while the activity recovery found on Ni-IMAC beads was about 37.1%. A remarkable difference on stability of trypsin immobilized on three kinds of metal ion chelated beads during storage period was also found. Activity of trypsin on Cu-IMAC decreased to 24% of its initial activity after 1-week storage at 4 °C, while about 80% activity was retained on both Ni-IMAC and Zn-IMAC beads. Trypsin immobilized on Zn-CTS-SiO₂ could effectively digest BSA revealed by HPLC peptide mapping.     

基于微卫星标记的苹果绵蚜种群遗传结构动态

【目的】苹果绵蚜是我国重要的入侵害虫,对苹果生产造成了严重危害。近年来,苹果绵蚜扩散面积增大,危害加重。了解苹果绵蚜入侵过程中的分子生态变化,可为该虫的综合防控提供依据。【方法】利用微卫星标记技术,选择6个微卫星位点对山东省6个地区(烟台、威海、青岛、潍坊、聊城、泰安)2012—2015年苹果绵蚜种群遗传结构变化规律进行分析。【结果】2012—2015年,山东省6个地区的苹果绵蚜遗传多样性随时间推移逐渐降低。其中,2012年的遗传多样性极显著高于2013—2015年;2013—2015年之间虽然差异不显著,但随时间推移,等位基因观测值(Na)和期望杂合度(He)等遗传多样性指数有逐渐降低的趋势。通过无限等位基因模型、双相突变模型和逐步突变模型分析发现,6个地区的苹果绵蚜均经历了瓶颈效应,是遗传多样性降低的主要原因。对6个微卫星位点分析发现,Erio20、Erio75和Erio78扩增到的苹果绵蚜等位基因数量以及这3个位点的多样性指数随时间推移逐渐降低。【结论】Erio20、Erio75和Erio78是引起苹果绵蚜遗传多样性降低的主要多态位点。苹果绵蚜可能进化出了"超级克隆"基因型,因此,其可在我国适应不同生态环境并增大扩散范围。     

贵州梵净山国家级自然保护区鸟兽红外相机监测

红外相机监测是了解野生动物多样性现状、动态变化和面临威胁的重要手段。本研究采用网格抽样调查法, 在贵州梵净山国家级自然保护区内选取2个监测样区共40个监测位点布设红外相机, 对区内兽类和鸟类物种进行监测调查。2017年4月至2018年12月间, 红外相机累积监测14,808个相机工作日, 共收集有效照片14,119张, 独立有效物种照片3,199张。共鉴定野生动物9目22科61种, 其中兽类26种, 隶属于4目12科; 鸟类35种, 隶属于5目10科。记录到国家I级重点保护野生动物2种: 黔金丝猴(Rhinopithecus brelichi)和白颈长尾雉(Syrmaticus ellioti), 国家II级重点保护野生动物9种; 被IUCN红色名录评估为濒危(EN)的1种、易危(VU)的5种、近危(NT)的8种。物种的相对多度指数(relative abundance index, RAI)分析结果显示, 藏酋猴(Macaca thibetana, RAI = 28.23)、毛冠鹿(Elaphodus cephalophus, RAI = 15.46)、野猪(Sus scrofa, RAI = 11.82)、小麂(Muntiacus reevesi, RAI = 9.05)、黔金丝猴(RAI = 7.70)为相对多度最高的5种兽类; 紫啸鸫(Myophonus insularis, RAI = 10.33)、红腹角雉(Tragopan temminckii, RAI = 9.59)、红腹锦鸡(Chrysolophus pictus, RAI = 6.96)、白颈长尾雉(RAI = 3.71)、勺鸡(Pucrasia macrolopha, RAI = 1.55)为相对多度最高的5种鸟类。另外, 红外相机还监测到较多的家畜活动(RAI = 11.14)和人为活动(RAI = 12.90), 保护区管理部门仍需采取相应管理措施, 进一步提高周边居民的保护意识, 促进保护区与社区的协调发展。     

Excess cholesterol inhibits glucose‐stimulated fusion pore dynamics in insulin exocytosis

Type 2 diabetes is caused by defects in both insulin sensitivity and insulin secretion. Glucose triggers insulin secretion by causing exocytosis of insulin granules from pancreatic β‐cells. High circulating cholesterol levels and a diminished capacity of serum to remove cholesterol from β‐cells are observed in diabetic individuals. Both of these effects can lead to cholesterol accumulation in β‐cells and contribute to β‐cell dysfunction. However, the molecular mechanisms by which cholesterol accumulation impairs β‐cell function remain largely unknown. Here, we used total internal reflection fluorescence microscopy to address, at the single‐granule level, the role of cholesterol in regulating fusion pore dynamics during insulin exocytosis. We focused particularly on the effects of cholesterol overload, which is relevant to type 2 diabetes. We show that excess cholesterol reduced the number of glucose‐stimulated fusion events, and modulated the proportion of full fusion and kiss‐and‐run fusion events. Analysis of single exocytic events revealed distinct fusion kinetics, with more clustered and compound exocytosis observed in cholesterol‐overloaded β‐cells. We provide evidence for the involvement of the GTPase dynamin, which is regulated in part by cholesterol‐induced phosphatidylinositol 4,5‐bisphosphate enrichment in the plasma membrane, in the switch between full fusion and kiss‐and‐run fusion. Characterization of insulin exocytosis offers insights into the role that elevated cholesterol may play in the development of type 2 diabetes.