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841.
842.
843.
Xylose anaerobic conversion by open-mixed cultures 总被引:1,自引:0,他引:1
Margarida F. Temudo Tania Mato Robbert Kleerebezem Mark C. M. van Loosdrecht 《Applied microbiology and biotechnology》2009,82(2):231-239
Xylose is, after glucose, the dominant sugar in agricultural wastes. In anaerobic environments, carbohydrates are converted
into volatile fatty acids and alcohols. These can be used as building blocks in biotechnological or chemical processes, e.g.,
to produce bioplastics. In this study, xylose fermentation by mixed microbial cultures was investigated and compared with
glucose under the same conditions. The product spectrum obtained with both substrates was comparable. It was observed that,
in the case of xylose, a higher fraction of the carbon was converted into catabolic products (butyrate, acetate, and ethanol)
and the biomass yield was approximately 20% lower than on glucose, 0.16 versus 0.21 Cmol X/Cmol S. This lower yield is likely
related to the need of an extra ATP during xylose uptake. When submitted to a pulse of glucose, the population cultivated
on xylose could instantaneously convert the glucose. No substrate preference was observed when glucose and xylose were fed
simultaneously to the continuously operated bioreactor. 相似文献
844.
Two new species of the genus Quadroppia Jacot, 1939, Quadroppia (Coronoquadroppia) squarrosa sp. n. and Quadroppia (Quadroppia) foveolata sp. n. are described and illustrated from Turkey. They were collected from soil and litter under pear trees (Pyrus communis) and moss on rock, respectively. 相似文献
845.
Tayvich Vorapreeda Chinae Thammarongtham Kobkul Laoteng 《World journal of microbiology & biotechnology》2016,32(7):122
Lipid-degrading or lipolytic enzymes have gained enormous attention in academic and industrial sectors. Several efforts are underway to discover new lipase enzymes from a variety of microorganisms with particular catalytic properties to be used for extensive applications. In addition, various tools and strategies have been implemented to unravel the functional relevance of the versatile lipid-degrading enzymes for special purposes. This review highlights the study of microbial lipid-degrading enzymes through an integrative computational approach. The identification of putative lipase genes from microbial genomes and metagenomic libraries using homology-based mining is discussed, with an emphasis on sequence analysis of conserved motifs and enzyme topology. Molecular modelling of three-dimensional structure on the basis of sequence similarity is shown to be a potential approach for exploring the structural and functional relationships of candidate lipase enzymes. The perspectives on a discriminative framework of cutting-edge tools and technologies, including bioinformatics, computational biology, functional genomics and functional proteomics, intended to facilitate rapid progress in understanding lipolysis mechanism and to discover novel lipid-degrading enzymes of microorganisms are discussed. 相似文献
846.
Nikhil Ram-Mohan Aharon Oren R. Thane Papke 《Extremophiles : life under extreme conditions》2016,20(5):747-757
Stability of microbial communities can impact the ability of dispersed cells to colonize a new habitat. Saturated brines and their halophile communities are presumed to be steady state systems due to limited environmental perturbations. In this study, the bacteriorhodopsin-containing fraction of the haloarchaeal community from Eilat salt crystallizer ponds was sampled five times over 3 years. Analyses revealed the existence of a constant core as several OTUs were found repeatedly over the length of the study: OTUs comprising 52 % of the total cloned and sequenced PCR amplicons were found in every sample, and OTUs comprising 89 % of the total sequences were found in more than one, and often more than two samples. LIBSHUFF and UNIFRAC analyses showed statistical similarity between samples and Spearman’s coefficient denoted significant correlations between OTU pairs, indicating non-random patterns in abundance and co-occurrence of detected OTUs. Further, changes in the detected OTUs were statistically linked to deviations in salinity. We interpret these results as indicating the existence of an ever-present core bacteriorhodopsin-containing Eilat crystallizer community that fluctuates in population densities, which are controlled by salinity rather than the extinction of some OTUs and their replacement through immigration and colonization. 相似文献
847.
848.
The chitosan with three-dimensional porous structure greatly increased the effective electrode surface for loading of platinum
nanoparticles and promoted efficient electron transfer. The resulting biosensor had a response time (within 5 s) and a linear
response from 6 μM to 4.2 mM glucose with a detection limit of 2 μM (S/N = 3). Moreover, the methodology can be applied for
the immobilization of other enzymes. 相似文献
849.
Cell migration and growth are essential components of the development of multicellular organisms. The role of various cues
in directing cell migration is widespread, in particular, the role of signals in the environment in the control of cell motility
and directional guidance. In many cases, especially in developmental biology, growth of the domain also plays a large role
in the distribution of cells and, in some cases, cell or signal distribution may actually drive domain growth. There is an
almost ubiquitous use of partial differential equations (PDEs) for modelling the time evolution of cellular density and environmental
cues. In the last 20 years, a lot of attention has been devoted to connecting macroscopic PDEs with more detailed microscopic
models of cellular motility, including models of directional sensing and signal transduction pathways. However, domain growth
is largely omitted in the literature. In this paper, individual-based models describing cell movement and domain growth are
studied, and correspondence with a macroscopic-level PDE describing the evolution of cell density is demonstrated. The individual-based
models are formulated in terms of random walkers on a lattice. Domain growth provides an extra mathematical challenge by making
the lattice size variable over time. A reaction–diffusion master equation formalism is generalised to the case of growing
lattices and used in the derivation of the macroscopic PDEs. 相似文献
850.
Hyo Je Cho Kyungsun Kim Seo Yean Sohn Ha Yeon Cho Kyung Jin Kim Myung Hee Kim Dockyu Kim Eungbin Kim Beom Sik Kang 《The Journal of biological chemistry》2010,285(45):34643-34652
A meta-cleavage pathway for the aerobic degradation of aromatic hydrocarbons is catalyzed by extradiol dioxygenases via a two-step mechanism: catechol substrate binding and dioxygen incorporation. The binding of substrate triggers the release of water, thereby opening a coordination site for molecular oxygen. The crystal structures of AkbC, a type I extradiol dioxygenase, and the enzyme substrate (3-methylcatechol) complex revealed the substrate binding process of extradiol dioxygenase. AkbC is composed of an N-domain and an active C-domain, which contains iron coordinated by a 2-His-1-carboxylate facial triad motif. The C-domain includes a β-hairpin structure and a C-terminal tail. In substrate-bound AkbC, 3-methylcatechol interacts with the iron via a single hydroxyl group, which represents an intermediate stage in the substrate binding process. Structure-based mutagenesis revealed that the C-terminal tail and β-hairpin form part of the substrate binding pocket that is responsible for substrate specificity by blocking substrate entry. Once a substrate enters the active site, these structural elements also play a role in the correct positioning of the substrate. Based on the results presented here, a putative substrate binding mechanism is proposed. 相似文献