Bioflocculation of Euglena gracilis via direct application of fungal filaments: a rapid harvesting method

Journal of Applied Phycology - The high cost and environmental impact of traditional microalgal harvesting methods limit commercialization of microalgal biomass. Fungal bioflocculation of...     

Effect of sulfadiazine and trimethoprim on activated sludge performance and microbial community dynamics in laboratory-scale membrane bioreactors and sequencing batch reactors at 8°C

The effect of antibiotics sulfadiazine and trimethoprim on activated sludge operated at 8°C was investigated. Performance and microbial communities of sequencing batch reactors (SBRs) and Membrane Bioreactors (MBRs) were compared before and after the exposure of antibiotics to the synthetic wastewater. The results revealed irreversible negative effect of these antibiotics in environmentally relevant concentrations on nitrifying microbial community of SBR activated sludge. In opposite, MBR sludge demonstrated fast adaptation and more stable performance during the antibiotics exposure. Dynamics of microbial community was greatly affected by presence of antibiotics. Bacteria from classes Betaproteobacteria and Bacteroidetes demonstrated the potential to develop antibiotic resistance in both wastewater treatment systems while Actinobacteria disappeared from all of the reactors after 60 days of antibiotics exposure. Altogether, results showed that operational parameters such as sludge retention time (SRT) and reactor configuration had great effect on microbial community composition of activated sludge and its vulnerability to antibiotics. Operation at long SRT allowed archaea, including ammonium oxidizing species (AOA) such as Nitrososphaera viennensis to grow in MBRs. AOA could have an important role in stable nitrification performance of MBR-activated sludge as a result of tolerance of archaea to antibiotics. © 2018 American Institute of Chemical Engineers Biotechnol. Prog., 35: e2708, 2019     

Influence of microbial activity on plant–microbial competition for organic and inorganic nitrogen

To investigate how the level of microbial activity in grassland soils affects plant–microbial competition for different nitrogen (N) forms, we established microcosms consisting of a natural soil community and a seedling of one of two co-existing grass species, Anthoxanthum odoratum or Festuca rubra. We then stimulated the soil microbial community with glucose in half of the microcosms and followed the transfer of added inorganic (¹⁵NH₄¹⁵NO₃) and organic (glycine-2-¹³C-¹⁵N) N into microbial and plant biomass. We found that microbes captured significantly more ¹⁵N in organic than in inorganic form and that glucose addition increased microbial ¹⁵N capture from the inorganic source. Shoot and root biomass, total shoot N content and shoot and root ¹⁵N contents were significantly greater for A. odoratum than F. rubra, whereas F. rubra had higher shoot and root N concentrations. Where glucose was not added, A. odoratum had higher shoot ¹⁵N content with organic than with inorganic ¹⁵N addition, whereas where glucose was added, both species had higher shoot ¹⁵N content with inorganic than with organic ¹⁵N. Glucose addition had equally negative effects on shoot growth, total shoot N content, shoot and root N concentrations and shoot and root ¹⁵N content for both species. Both N forms produced significantly more shoot biomass and higher shoot N content than the water control, but the chemical form of N had no significant effect. Our findings suggest that plant species that are better in capturing nutrients from soil are not necessarily better in tolerating increasing microbial competition for nutrients. It also appears that intense microbial competition has more adverse effects on the uptake of organic than inorganic N by plants, which may potentially have significant implications for interspecific plant–plant competition for N in ecosystems where the importance of organic N is high and some of the plant species specialize in use of organic N.     

Effects of defoliation intensity on soil food-web properties in an experimental grassland community

We established a greenhouse experiment based on replicated mini‐ecosystems to evaluate the effects of defoliation intensity on soil food‐web properties in grasslands. Plant communities, composed of white clover (Trifolium repens), perennial ryegrass (Lolium perenne) and plantain (Plantago lanceolata) with well‐established root and shoot systems, were subjected to five defoliation intensity treatments: no trimming (defoliation intensity 0, or DI 0), and trimming of all plant material to 35 cm (DI 1), 25 cm (DI 2), 15 cm (DI 3) and 10 cm (DI 4) above soil surface every second week for 14 weeks. Intensification of defoliation reduced shoot production and standing shoot and root mass of plant communities but increased their root to shoot ratio. Soil microbial activity and biomass decreased with intensification of defoliation. Concentrations of NO₃–N in soil steadily increased with intensifying defoliation, whereas NH₄–N concentrations did not vary between treatments. Numbers of microbi‐detritivorous enchytraeids, bacterial‐feeding rotifers and bacterial‐feeding nematodes steadily increased with intensifying defoliation, while the abundance of fungal‐feeding nematodes was significantly enhanced only in DI 3 and DI 4 relative to DI 0. The abundance of herbivorous nematodes per unit soil mass was lower in DI 3 and DI 4 than in DI 0, DI 1 and DI 2, but when calculated per unit root mass, their abundance tended to increase with defoliation intensity. The abundance of omnivorous and predatory nematodes appeared to be highest in the most intensely defoliated systems. The ratio of abundance of fungal‐feeding nematodes to that of bacterial‐feeding nematodes was not significantly affected by defoliation intensity. The results infer that defoliation intensity may significantly alter the structure of soil food webs in grasslands, and that defoliation per se is able to induce patterns observed in grazing studies in the field. The results did not support hypotheses that defoliation per se would cause a shift between the bacterial‐based and fungal‐based energy channels in the decomposer food web, or that herbivore and detritivore densities in soil would be highest under intermediate defoliation. Furthermore, our data for microbes and microbial feeders implies that the effects of defoliation intensity on soil food‐web structure may depend on the duration of defoliation and are therefore likely to be dynamic rather than constant in nature.     

Time-resolved fluoroimmunoassay of plasma and urine O-desmethylangolensin

We present a method for the determination of the phytoestrogen metabolite O-desmethylangolensin (O-DMA) in plasma (serum) and in urine. O-DMA is a metabolite of daidzein, which occurs in soybeans. It has been suggested that isoflavones may afford protection against breast and prostate cancer and therefore, also the metabolites are of interest. The method is based on time-resolved fluoroimmunoassay (TR–FIA) using a europium chelate as a label. After the synthesis of 4′′-O-carboxymethyl-O-DMA, this compound is coupled to bovine serum albumin, and then used as antigen in immunization of rabbits. The tracers with the europium chelate are synthesized using the same 4′′-O-derivative of the -methyldeoxybenzoin. After enzymatic hydrolysis and ether extraction the immunoassay is carried out by time resolved fluoroimmunoassay (TR–FIA). Cross-reactivity was tested with angolensin, dihydrogenistein, dihydrodaidzein, equol, 6′-OH-angolensin, trans-4-OH-equol, 6′-OH-O-DMA, cis-4-OH-equol and 5-OH-equol. The antiserum cross-reacted only with angolensin. This cross-reactivity seems not to influence the results, which were highly specific. Plasma samples are hydrolyzed and extracted. Urine samples are analyzed directly after hydrolysis without extraction. The correlation coefficient between the plasma TR–FIA results and the GC–MS results was high; r value was 0.985. The correlation coefficient between the urine TR–FIA results and the GC–MS results was high over the entire range of concentrations (0–1500 nmol/l); r value was 0.976, but lower in the low concentration range (0–100 nmol/l), i.e. value was 0.631. The intra-assay coefficients of variation (CVs) for plasma O-DMA concentrations and for urine O-DMA concentrations at three different concentrations varied 2.8–7.7 and 3.0–6.0%, respectively and the inter-assay CVs varied 3.8–8.9 and 4.4–6.6%, respectively. The working range of the plasma and urine O-DMA assays was 0.5–512 nmol/l.     

Interactive effects of defoliation and an AM fungus on plants and soil organisms in experimental legume–grass communities

We established a 13‐week greenhouse experiment based on replicated microcosms to test whether the effects of defoliation on grassland plants and soil organisms depend on plant species composition and the presence of arbuscular mycorrhizal (AM) fungi. The experiment constituted of three treatment factors – plant species composition, inoculation of an AM fungus and defoliation – in a fully factorial design. Plant species composition had three levels: (1) Trifolium repens monoculture (T), (2) Phleum pratense monoculture (P) and (3) mixture of T. repens and P. pratense (T+P), while the AM inoculation and the defoliation treatment had two levels: (1) no inoculation of AM fungi and (2) inoculation of the AM fungus Glomus claroideum BEG31, and (1) no trimming, and (2) trimming of all plant material to 6 cm above the soil surface three times during the experiment, respectively. At the final harvest, AM colonization rate of plant roots differed between the plant species compositions, being on average 45% in T, 33% in T+P and 4% in P. Defoliation did not affect the colonization rate in T but raised the rate from 1% to 7% in P and from 20% to 45% in T+P. Shoot production and standing shoot and root biomass were 48%, 85% and 68% lower, respectively, in defoliated than in non‐defoliated systems, while the AM fungus did not affect shoot production and root mass but reduced harvested shoot mass by 8% in non‐defoliated systems. Of the plant quality attributes, defoliation enhanced the N concentration of harvested shoot biomass by 129% and 96% in P and T+P, respectively, but had no effect in T, while the C concentration of shoot biomass was on average 2.7% lower in defoliated than in non‐defoliated systems. Moreover, defoliation reduced shoot C yield (the combined C content of defoliated and harvested shoot biomass) on average by 47% across all plant species compositions and shoot N yield by 37% in T only. In contrast to defoliation, the AM fungus did not affect shoot N and C concentrations or shoot N yield, but induced 10% lower C yield in non‐defoliated systems and 17% higher C yield in defoliated T. In roots, defoliation led to 56% and 21% higher N concentration in P and T+P, respectively, and 28% higher C concentration in P, while the mycorrhizal fungus lowered root N concentration by 9.7% in defoliated systems and had no effect on root C concentrations. In the soil, the nematode community was dominated by bacterivores and the other trophic groups were found in a few microcosms only. Bacterivores were 45% more abundant in defoliated than in non‐defoliated systems, but were not affected by plant species composition or the AM fungus. Soil inorganic N concentration was significantly increased by defoliation in T+P, while the mycorrhizal fungus reduced NH₄–N concentration by 40% in T. The results show that defoliation had widespread effects in our experimental systems, and while the effects on plant growth were invariably negative and those on bacterivorous nematodes invariably positive, most effects on plant C and N content and soil inorganic N concentration varied depending on the plant species present. In contrast, the effects of defoliation did not depend on the presence of the AM fungus, which suggests that while the relative abundance of legumes and grasses is likely to have a significant role in the response of legume–grass communities to defoliation, the role of AM fungi may be less important. In line with this, the AM fungus had only a few significant effects on plant and soil attributes in our systems and each of them was modified by defoliation and/or plant species composition. This suggests that the effects of AM fungi in legume–grass communities may largely depend on the plant species present and whether the plants are grazed or not.     

Relationship between nitrogen fixation and mycorrhiza

Summary Since the discovery of mycorrhizal symbiosis 100 years ago, its role in the nitrogen metabolism of plants has received much attention. In early literature there are numerous reports of the fixation of atmospheric nitrogen by mycorrhizal fungi. N-fixation has been suggested in most kinds of mycorrhizal systems, i.e. ectomycorrhizal forest trees, orchids, Ericales, and VA-mycorrhizal plants. Today, however, it is generally accepted that only procaryotic organisms can fix atmospheric nitrogen and that both ecto- and endomycorrhizal fungi lack this capacity. Many vascular plants possess both mycorrhizae and N-fixing symbiotic organs. This group includes legumes with rhizobial nodules and non-legumes with actinorrhizal nodules. Mycorrhizae of such systems can be either ectotrophic or endotrophic, or both. Nitrogen fixation in forests and other natural ecosystems has recently been attributed mainly to associative-symbiotic bacteria, i.e. bacteria living in the rhizosphere or close proximity of plant roots. Since the roots, in fact, are usually also infected by mycorrhizal fungi, a new concept of mycorrhizosphere has been introduced. Relationships between mycorrhizal fungi and N-fixing bacteria of the mycorrhizosphere are poorly known. N-fixing bacteria have been found even inside the fungal mantle of ectomycorrhizae.

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Resumen Desde el descubrimiento de la simbiosis micorrízica hace 100 años su papel en el metabolismo nitrogenado de las plantas ha recibido una atención preferente. En la literatura más antigua peuden encontrarse numerosas referencias relacionadas con la fijación de nitrógeno atmosférico por hongos micorrízicos. La fijación de nitrógeno ha sido sugerida una y otra vez para la mayoría de sistemas micorrízicos (ectomicorrizas de árboles, orquídeas, ericaceas y plantas con micorrizas VA). Hoy en día se acepta, sin embargo, que en términos generales tan solo organismas procariotas son capaces de fijar nitrógeno atmosférico y por lo tanto los hongos tanto ecto como endo-micorrízicos no pueden tener dicha propiedad. Un gran número de plantas poseen a la vez micorrizas y organismos simbióticos de fijación de N. Estas incluyen las leguminosas con nódulos deRhizobium y no leguminosas con nódulos actinorrízicos. Las micorrizas de dichas sistemas pueden ser ecto o endotróficas o ambos tipos a la vez. La fijación de nitrógeno en bosques y otros ecosistemas naturales ha sido recientemente atribuida principalmente a bacterias de tipo asociative-simbiótico, es decir bacterias que viven en ia rizosfera o en las cercanías de las raíces de las plantas. Debito a que las raíces, de hecho, estan al mismo tiempo infectadas por hongos micorrízicos, un nuevo concepto, la micorrizofera ha sido acieñado. Las relaciones entre hongos micorrízicos y bacterias fijadoras de N son poco conocidas. Se han encontrado bacterias fijadoras de N todavia dentro el manto fúngico de las ectomicorrizas.

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Résumé Depuis la découverte de la symbiose mycorhizienne, il y 100 ans, son rôle dans le métabolisme azoté des plantes a reçu beaucoup d'attention. Dans la litérature ancienne, on trouve beaucoup de rapports sur la fixation de l'azote atmosphérique par les champignons des mycorhizes. La fixation de N été suggérée pour la plupart des systèmes de mycorhizes, c'est à dire pour les ectomycorhizes des arbres forestiers, des orchidées, des Ericales, et pour les plantes à mycorhizes yésiculaires-arbusculaires (VA). Aujourd'hui, cependant, il est généralement reconnu que neuls les organismes procaryotes peuvent fixer l'azote atmosphérique et que, par conséquent, les champignons des ecto- et endo-mycorhizes sont dépourvus de cette aptitude. Un grand nombre de plantes vasculaires possèdent à la fois des mycorhizes et des organes symbiotiques fixant l'azote. Ce groupe comprend les légumineuses à nodules rhizobiens et des nonlégumineuses à nodules actinorhiziens. Les mycorhizes de ces systèmes peuvent être ecto- ou endo-trophiques ou les deux à la fois. La fixation de l'azote dans les forêts et d'autres écosystèmes naturels a récemment été attribuée aux bactéries associatives-symbiotiques, c'est à dire à des bactéries vivant dans la rhizosphère où en proximité étroite avec les racines des plantes. Comme les racines, en fait, sont en même temps inféctées par des champignons mycorhiziens, un nouveau concept de la mycorhizosphère s'est introduit. Les relations entre champignons des mycorhizes et bactéries fixatrices de l'azote sont mal connues. On a trouvé des bactéries fixatrices à l'intérieur même du manteau fongique des ecto-mycorhizes.

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Invited paper presented at the VII International Conference on the Global Impacts of Applied Microbiology, Helsinki, 12-16.8.1985. Session 10.