A beta-lactamase belonging to group 2e from oral clinical isolates of Prevotella intermedia

A beta-lactamase in oral clinical isolates of Prevotella intermedia that hydrolyzed cefuroxime and cephalothin with rates of 600 and 53.3 respectively, relative to that for cephaloridine (100), was characterized as a 2e-cephalosporinase. Inhibition was observed by clavulanic acid (IC50 0.72 microM), tazobactam (IC50 0.21 microM) and sulbactam (IC50 0.07 microM) and was not inhibited by cloxacillin, EDTA, NaCl or p-CMB. The pI and pH optima were 4.7 and 5.4, respectively.     

Species richness and floristic composition in four hectares in the Jaú National Park in upland forests in Central Amazonia

Four hectares were inventoried for all trees with diameter at breast height (DBH) of 10cm or greater in a terra firme forest 200km Northeast of Manaus, Central Amazonia. The number of species varied from 137 to 168, the number of individuals from 639 to 713, total basal area from 32.8 to 40.2 and total biomass from 405 to 560 tons per hectare. The majority of trees, 90%, had a DBH between 10 and 30 cm. Leguminosae, Lauraceae, Sapotaceae, Chrysobalanaceae and Moraceae were the most rich families (number of species) in all sampled hectares. The most abundant families in all sampled hectares (number of trees) were Leguminosae, Burseraceae, Myristicaceae, Moraceae and Chrysobalanaceae. The most dominant families in all sampled hectares (basal area and biomass) were Leguminosae, Lecythidaceae, Chrysobalanaceae, Bombacaceae and Moraceae. Similarity indexes at family level varied from 67 to 86% between the four hectares sampled. Alexa grandiflora (Leguminosae) was the most abundant species in the hectares one and three, while Scleronema micranthum (Bombacaceae), and Oenocarpus bacaba (Palmae) were the most abundant species in hectares two and four. S. micranthum was the most dominant species (basal area) in hectares one and two, while Bertholletia excelsa (Lecythidaceae) and Goupia glabra (Celastraceae) were the most dominant species in hectares three and four. S. micranthum (Bombacaceae), Buchenavia sp. 2 (Combretaceae), B. excelsa (Lecythidaceae) Couepia obovata (Chrysobalanaceae) were the most dominant species (biomass) in hectares one to four, respectively. Similarity indexes at species level varied from 26 to 44% between the four sampled hectares. This inventory is compared with previous studies and it was found that, in our study area, there was a greater proportion of trees of 60cm diameter or more and consequently a considerably higher total basal area. It is concluded that there are still an inadequate number of inventories of Amazonian terra firme forests to elucidate the major floristic pattern a both regional and local levels. Since the area is a mosaic of distinct floristic communities it is essential to obtain further standardized inventory data in order to set adequate conservation policies for the region.     

Kinetic analysis of duodenal and testicular cytochrome P450c17 in the rat

In the adult rat, the duodenal tissue of both sexes can convert progesterone to 17-hydroxyprogesterone, androstenedione and testosterone. The transition from C₂₁ to C₁₉ steroids is apparently controlled by the same cytochrome P450c17 expressed in the testis, which catalyzes both 17-hydroxylation and C-17,20 bond scission at a single bifunctional active site. The kinetic parameters of this enzyme were measured at the steady state for both reactions using [1,2-³H]progesterone and [1,2-³H]17-hydroxyprogesterone as substrates. In the testis and male and female duodena, the K_m values for progesterone 17-hydroxylation were 14.2, 23.8 and 23.2 nM, whereas the V_max values were 105, 3.5 and 3.1 pmol/mg protein/min, respectively. With respect to C-17,20 lyase activity, the K_m values for exogenous 17-hydroxyprogesterone were 525, 675 and 637 nM, whereas the V_max values were 283, 7.8 and 7.8 pmol/mg protein/min, respectively. However, when the K_m values were calculated with respect to intermediate 17-hydroxyprogesterone formed from progesterone, they were similar to the K_m values for 17-hydroxylase, being 15, 31.4 and 24.8 nM, whereas the V_max values were 26.3, 2 and 1.8 pmol/mg protein/min, respectively. The similarity of K_m values is due to the fact that the relative androgen formation efficiency (bond scission events/total 17-hydroxylation events ratio) was remarkably constant in both testicular and duodenal incubates, irrespective of progesterone concentration. Efficiency values were 2-fold higher in duodenal tissue (0.54) than in testis (0.25). Estradiol-17β inhibited 17-hydroxylation but not bond scission on intermediate 17-hydroxyprogesterone, because it did not affect the efficiency value. Rat duodenal P450c17 has the same substrate affinity, a lower specific activity and a higher androgen formation efficiency than testicular P450c17.     

Influence of amylose content on starch films and foams

After extraction of smooth pea starch and waxy maize starch from pure amylose and amylopectin fractions, films with various amylose contents were prepared by casting in the presence of water or water with glycerol. For unplasticized films, a continuous increase in tensile strength (40–70 MPa) and elongation (4–6%) was observed as amylose increased from 0 to 100%. Discrepancies with values obtained for native starches with variable amylose content and different botanical origins were attributable to variations in the molecular weights of components. Taking cell wall properties into account, the values obtained in the laboratory were used to improve the relation between the flexural behavior of extruded foams and the model of cellular solids with open cavities.

The properties of plasticized films were not improved by the presence of glycerol and remained constant when amylose content was higher than 40%. Results are interpreted on the basis of topological differences between amylose and amylopectin.     

β-Turn conformations in crystal structures of model peptides containing α,α-Di-n-propylglycine and α,α-Di-n-butylglycine

The crystal state conformations of three peptides containing the α,α-dialkylated residues. α,α-di-n-propylglycine (Dpg) and α,α-di-n-butylglycine (Dbg), have been established by x-ray diffraction. Boc-Ala-Dpg-Alu-OMe (I) and Boc-Ala-Dbg-Ala-OMe (III) adopt distorted type II β-turn conformations with Ala (1) and Dpg/Dbg (2) as the corner residues. In both peptides the conformational angles at the Dxg residue (I: ? = 66.2°, ψ = 19.3°; III: ? = 66.5°. ψ = 21.1°) deviate appreciably from ideal values for the i + 2 residue in a type II β-turn. In both peptides the observed (N…O) distances between the Boc CO and Ala (3) NH groups are far too long (1: 3.44 Å: III: 3.63 Å) for an intramolecular 4 → 1 hydrogen bond. Boc-Ala-Dpg-Ata-NHMe (II) crystallizes with two independent molecules in the asymmetric unit. Both molecules HA and HB adopt consecutive β-turn (type III-III in HA and type III-I in IIB) or incipient 3₁₀-helical structures, stabilized by two intramolecular 4 → 1 hydrogen bonds. In all four molecules the bond angle N-C^α-C′ (τ) at the Dxg residues are ≥ 110°. The observation of conformational angles in the helical region of ?,ψ space at these residues is consistent with theoretical predictions. © 1995 John Wiley & Sons, Inc.     

Discover 1: a new program to search for unusually represented DNA motifs.

DISCOVER1 (DIStribution COunter VERsion 1) is a new program that can identify DNA motifs occurring with a high deviation from the expected frequency. The program generates families of patterns, each family having a common set of defined bases. Undefined bases are inserted amongst the defined bases in different ways, thus generating the diverse patterns of each family. The occurrences of the different patterns are then compared and analysed within each family, assuming that all patterns should have the same probability of occurrence. An extensive use of computer memory, combined with the immediate sorting of counts by address calculation allow a complete counting of all DNA motifs on a single pass on the DNA sequence. This approach offers a very fast way to search for unusually distributed patterns and can identify inexact patterns as well as exact patterns.     

Cytochemical demonstration of nucleoside phosphatase activity in myelinated nerve fibers of the rat

Summary The histochemical and cytochemical localization of end product from the Wachstein-Meisel reaction was examined in transverse frozen sections of rat ischiatic nerve and spinal nerve roots. A variety of fixatives, substrates, and inhibitors were used at varying pH. Following glutaraldehyde fixation, nucleoside phosphatase activity was noted in the axon-Schwann cell interface of both unmyelinated and myelinated nerve fibers. The presence of this enzymatic activity at this strategic location in the nerve fiber complex attests to the importance of this space as a metabolically active site.Additional deposits of end product occurred on neurofilaments of myelinated and unmyelinated axons and were observed as diffuse axonal stains by light microscopy. These precipitates had a predilection for tissue fixed in formalin or hydroxyadipaldehyde and were relatively more prominent following acidic incubations. The resemblance between these deposits and spurious axonal acid phosphatase precipitates was discussed.This study was supported by Grant NB 04161 of the National Institute of Neurological Disease and Blindness.     

Hormonal regulation of growth of Cicer arietinum L. epicotyls. changes in the chemical composition of the cell wall

The growth capacity of the epicotyls of Cicer arietinum L. decreased from the sub-apical region to the basal region. The pectic fraction content falls from the upper to the lower part of the epicotyls. Contrary to this, the -cellulose content was lower in the upper part and higher in the basal one. The hemicellulosic content was almost constant over the whole epicotyl. Treatment of the epicotyls with IAA or GA₃, compounds which induce growth in epicotyls, induced a decrease in galactose content in the hemicellulosic fraction as well as in the pectic fraction. On the other hand, epicotyls treated with kinetin, a compound which does not stimulate growth, did not show a decrease, though they did show a considerable increase in -cellulose content.Abreviations GLC gas liquid chromatography - GA₃ gibberellic acid - IAA indole-3-acetic-acid - TFA trifluoroactic acid     

X-ray studies on the conformation of poly-N -carbobenzoxy-L- , -diaminobutyric acid and poly-N -carbobenzoxy-L-ornithine

X-ray diagrams from oriented films and fibers of poly-N^γ-carbobenzoxy-L -α,γ-diaminobutyric acid (PCLB) and of poly-N^δ-carbobenzoxy-L-ornithine (PCLO) have been examined. The conformation in the solid state for both polymers is that of an α-helix, 18/5 for PCLB and 11/3 for PCLO, respectively. Furthermore, while the PCLB molecules are packed in a trigonal lattice whose dimensions, on hexagonal axes, are a = 27.5 and c = 27.0 Å, the PCLO unit cell is monoclinic with a = 23.3, b = 22.7, c = 16.2 Å, and γ = 119.2°.