Metabolic balance of streams draining urban and agricultural watersheds in central Japan

Empirical data that describe the metabolic balance of stream ecosystems in human-dominated watersheds are scarce. We measured ecosystem metabolism in 23 open-canopied lowland streams draining urban and agricultural areas in the Fuji River Basin, central Japan. Gross primary production (GPP) and community respiration (CR) were estimated using the diurnal dissolved oxygen (DO) change technique, with the reaeration coefficient (K ₂) determined from seven empirical depth-velocity equations. Because the predicted values of K ₂ showed variation among the depth-velocity equations, the estimates of stream metabolism also varied according to the equations. However, CR was almost always greater than GPP, resulting in negative net ecosystem production (NEP) and GPP/CR ratios below unity for most of the study reaches. Highly heterotrophic streams were found in intensively farmed watersheds, suggesting that organic matter loading from agricultural lands is likely to be a source of allochthonous carbon fueling excess respiration in the study streams. In contrast, streams draining more urbanized areas were less heterotrophic. The present results suggest that lowland streams in agriculturally developed watersheds are associated strongly with terrestrial ecosystems as a source of organic carbon. The resultant strong respiration might become the dominant process in ecosystem metabolism, as reported for headwater streams, large downstream rivers, and estuaries.     

Metformin prevents methylglyoxal-induced apoptosis of mouse Schwann cells

Methylglyoxal (MG) is involved in the pathogenesis of diabetic complications via the formation of advanced glycation end products (AGEs) and reactive oxygen species (ROS). To clarify whether the antidiabetic drug metformin prevents Schwann cell damage induced by MG, we cultured mouse Schwann cells in the presence of MG and metformin. Cell apoptosis was evaluated using Hoechst 33342 nuclear staining, caspase-3 activity, and c-Jun-N-terminal kinase (JNK) phosphorylation. Intracellular ROS formation was determined by flow cytometry, and AMP-activated kinase (AMPK) phosphorylation was also examined. MG treatment resulted in blunted cell proliferation, an increase in the number of apoptotic cells, and the activation of caspase-3 and JNK along with enhanced intracellular ROS formation. All of these changes were significantly inhibited by metformin. No significant activation of AMPK by MG or metformin was observed. Taken together, metformin likely prevents MG-induced apoptotic signals in mouse Schwann cells by inhibiting the formation of AGEs and ROS.     

The food, growth and abundance of five co-existing cyprinids in lake basins of different morphometry and water quality

The food, growth and abundance of five co-existing cyprinid fish species in the eutrophic Lake Hiidenvesi were studied. The diet overlaps within the cyprinid community in shallow lake basins were compared with those in a deep basin, where littoral resources are less available. Roach, bleak and white bream inhabited both the shallow and the deep parts of the lake. Their growth rate was slow, probably due to the low availability of animal food, indicated by the increasing proportion of detritus and plant material in the diets towards the end of the summer. In the deep basin, roach and bleak, contrary to white bream, did not forage on the very abundant invertebrate Chaoborus flavicans, explained by the migration behaviour of C. flavicans. Blue bream, unlike other cyprinids, utilized copepods and had a relatively fast growth rate, but was mostly restricted to the shallow areas. The condition of the bream stock was weak both in terms of growth and abundance. The availability of zoobenthos was low and bream was not able to compete for zooplankton with the more specialized planktivores.     

Structure‐based analysis and evolution of a monomerized red‐colored chromoprotein from the Olindias formosa jellyfish

GFP‐like chromoproteins (CPs) with non‐fluorescence ability have been used as bioimaging probes. Existing CPs have voids in the optical absorption window which limits their extensibility. The development of new CP color is therefore ongoing. Here, we cloned CPs from the jellyfish, Olindias formosa, and developed a completely non‐fluorescent monomeric red CP, R‐Velour, with an absorption peak at 528 nm. To analyze the photophysical properties from a structural aspect, we determined the crystal structure of R‐Velour at a 2.1 Å resolution. R‐Velour has a trans‐chromophore similar to the green fluorescence protein, Gamillus, derived from the same jellyfish. However, in contrast to the two coplanar chromophoric rings in Gamillus, R‐Velour has a large torsion inducing non‐fluorescence property. Through site‐directed mutagenesis, we surveyed residues surrounding the chromophore and found a key residue, Ser155, which contributes to the generation of four‐color variants with the bathochromic and hypsochromic shift of the absorption peak, ranging from 506 to 554 nm. The recently proposed spectrum shift theory, based on the Marcus–Hush model, supports the spectrum shift of these mutants. These findings may support further development of R‐Velour variants with useful absorption characteristics for bioimaging, including fluorescence lifetime imaging and photoacoustic imaging.     

Isolation of clustered genes that are notably homologous to the eicosapentaenoic acid biosynthesis gene cluster from the docosahexaenoic acid-producing bacterium Vibrio marinus strain MP-1

A 40-kbp DNA fragment was isolated from the cosmid library of Vibrio marinus strain MP-1. Among the 22 putative open reading frames (ORFs) in this fragment, ORFs 8, 9, 10 and 11 had high homology with ORFs 5, 6, 7 and 8 of the eicosapentaenoic acid biosynthesis gene cluster, respectively. Then, we speculate that these ORFs are responsible for docosahexaenoic acid biosynthesis in this bacterium.     

Cloning and sequencing of clustered genes involved in fatty acid biosynthesis from the docosahexaenoic acid-producing bacterium, Vibrio marinus strain MP-1

A cluster of genes involved in fatty acid biosynthesis (fab) was isolated from docosahexaenoic acid (DHA)-producing Vibrio marinus strain MP-1. This fab gene cluster included five genes highly homologous to the Escherichia coli counterparts, and their order in the cluster was the same with that of the E. coli fab gene cluster except that the latter included the additional fabH gene. These fab genes should be involved in early steps of DHA biosynthesis in V. marinus strain MP-1.     

Purification and characterization of nitrate reductase from nodule cytosol of soybean plants

Nodulated soybean ( Glycine max [L.] Merr.) plants were grown in a nitrogen-free liquid culture medium prepared with distilled water. The cytosol fraction from root nodules showed a significant level of NADH-dependent nitrate reductase activity, even when the root did not show activity. This nitrate reductase was purified by column chromatography and native polyacrylamide gel electrophoresis (PAGE). The purified protein showed a main band at 100 kDa on sodium dodecyl sulfate (SDS)-PAGE. The K _m value for nitrate was 0.16 m M , and the highest activity was obtained at around pH 7.5. These characteristics are very similar to the inducible type of nitrate reductase, previously purified from soybean leaves. The developmental change in activity of this enzyme corresponded to that in nitrogenase activity.     

The NMR Microscope: a Unique and Promising Tool for Plant Science

An outline is given of nuclear magnetic resonance (NMR) microscopyand its application to plant science. An NMR microscope non-destructivelydetects free water in tissues and creates anatomical imagesof the tissues. Since the quantity and mobility of cell-associatedwater is closely related to the condition of the cells,¹H-NMRimages represent physiological maps of the tissue. In addition,the technique locates soluble organic compounds accumulatedin the tissues, such as sugars in vacuoles or fatty acids storedas oil droplets in vesicles.²³Na-NMR imaging is suitable forstudying the physiology of salt-tolerant plants. Diffusion measurementsprovide information about the transport of substances and ionsaccompanied by water movement. The recently developed techniquesof three-dimensional imaging, flow-encoded imaging and spectroscopicimaging open up new opportunities for plant biologists. TheNMR microscope is thus a unique and promising tool for the studyof living plant systems in relation to morphology, the truefeatures of which are often lost during preparation for moreconventional tissue analysis. Copyright 2000 Annals of BotanyCompany Review, NMR microscope,¹H-NMR imaging, non-destructive analysis, anatomy, cell-associated water, relaxation times, soluble compound mapping,²³Na-NMR imaging, physiological mapping, diffusion measurement, flow-encoded imaging     

The scent of disease: volatile organic compounds of the human body related to disease and disorder

Hundreds of volatile organic compounds (VOCs) are emitted from the human body, and the components of VOCs usually reflect the metabolic condition of an individual. Therefore, contracting an infectious or metabolic disease often results in a change in body odour. Recent progresses in analytical techniques allow rapid analyses of VOCs derived from breath, blood, skin and urine. Disease-specific VOCs can be used as diagnostic olfactory biomarkers of infectious diseases, metabolic diseases, genetic disorders and other kinds of diseases. Elucidation of pathophysiological mechanisms underlying production of disease-specific VOCs may provide novel insights into therapeutic approaches for treatments for various diseases. This review summarizes the current knowledge on chemical and clinical aspects of body-derived VOCs, and provides a brief outlook at the future of olfactory diagnosis.