Nanohaloarchaea as beneficiaries of xylan degradation by haloarchaea

Climate change, desertification, salinisation of soils and the changing hydrology of the Earth are creating or modifying microbial habitats at all scales including the oceans, saline groundwaters and brine lakes. In environments that are saline or hypersaline, the biodegradation of recalcitrant plant and animal polysaccharides can be inhibited by salt-induced microbial stress and/or by limitation of the metabolic capabilities of halophilic microbes. We recently demonstrated that the chitinolytic haloarchaeon Halomicrobium can serve as the host for an ectosymbiont, nanohaloarchaeon ‘Candidatus Nanohalobium constans’. Here, we consider whether nanohaloarchaea can benefit from the haloarchaea-mediated degradation of xylan, a major hemicellulose component of wood. Using samples of natural evaporitic brines and anthropogenic solar salterns, we describe genome-inferred trophic relations in two extremely halophilic xylan-degrading three-member consortia. We succeeded in genome assembly and closure for all members of both xylan-degrading cultures and elucidated the respective food chains within these consortia. We provide evidence that ectosymbiontic nanohaloarchaea is an active ecophysiological component of extremely halophilic xylan-degrading communities (although by proxy) in hypersaline environments. In each consortium, nanohaloarchaea occur as ectosymbionts of Haloferax, which in turn act as scavenger of oligosaccharides produced by xylan-hydrolysing Halorhabdus. We further obtained and characterised the nanohaloarchaea–host associations using microscopy, multi-omics and cultivation approaches. The current study also doubled culturable nanohaloarchaeal symbionts and demonstrated that these enigmatic nano-sized archaea can be readily isolated in binary co-cultures using an appropriate enrichment strategy. We discuss the implications of xylan degradation by halophiles in biotechnology and for the United Nation's Sustainable Development Goals.     

Deuterostome phylogeny and the sister group of the chordates: evidence from molecules and morphology

Complete coding regions of the 18S rRNA gene of an enteropneust hemichordate and an echinoid and ophiuroid echinoderm were obtained and aligned with 18S rRNA gene sequences of all major chordate clades and four outgroups. Gene sequences were analyzed to test morphological character phylogenies and to assess the strength of the signal. Maximum- parsimony analysis of the sequences fails to support a monophyletic Chordata; the urochordates form the sister taxon to the hemichordates, and together this clade plus the echinoderms forms the sister taxon to the cephalochordates plus craniates. Decay, bootstrap, and tree-length distribution analyses suggest that the signal for inference of dueterostome phylogeny is weak in this molecule. Parsimony analysis of morphological plus molecular characters supports both monophyly of echinoderms plus enteropneust hemichordates and a sister group relationship of this clade to chordates. Evolutionary parsimony does not support chordate monophyly. Neighbor-joining, Fitch-Margoliash, and maximum-likelihood analyses support a chordate lineage that is the sister group to an echinoderm-plus-hemichordate lineage. The results illustrate both the limitations of the 18S rRNA molecule alone for high- level phylogeny inference and the importance of considering both molecular and morphological data in phylogeny reconstruction.      

The human anti-IL-1β monoclonal antibody ACZ885 is effective in joint inflammation models in mice and in a proof-of-concept study in patients with rheumatoid arthritis

Introduction

IL-1β is a proinflammatory cytokine driving joint inflammation as well as systemic signs of inflammation, such as fever and acute phase protein production.

Methods

ACZ885, a fully human monoclonal antibody that neutralizes the bioactivity of human IL-1β, was generated to study the potent and long-lasting neutralization of IL-1β in mechanistic animal models as well as in a proof-of-concept study in patients with rheumatoid arthritis (RA).

Results

The mouse IL-1 receptor cross-reacts with human IL-1β, and it was demonstrated that ACZ885 can completely suppress IL-1β-mediated joint inflammation and cartilage destruction in mice. This observation prompted us to study the safety, tolerability and pharmacodynamic activity of ACZ885 in RA patients in a small proof-of-concept study – the first to be conducted in humans. Patients with active RA despite treatment with stable doses of methotrexate were enrolled in this dose escalation study. The first 32 patients were split into four cohorts of eight patients each (six were randomly assigned to active treatment and two to placebo). ACZ885 doses were 0.3, 1, 3 and 10 mg/kg, administered intravenously on days 1 and 15. To explore efficacy within 6 weeks of treatment, an additional 21 patients were randomly assigned to the 10 mg/kg cohort, resulting in a total of 20 patients dosed with 10 mg/kg and 15 patients treated with placebo. There was clinical improvement (American College of Rheumatology 20% improvement criteria) at week 6 in the 10 mg/kg treatment group; however, this did not reach statistical significance (P = 0.085). A statistically significant reduction in disease activity score was observed after 4 weeks in the 10 mg/kg group. Onset of action was rapid, because most responders exhibited improvement in their symptoms within the first 3 weeks. C-reactive protein levels decreased in patients treated with ACZ885 within 1 week. ACZ885 was well tolerated. Three patients receiving ACZ885 developed infectious episodes that required treatment. No anti-ACZ885 antibodies were detected during the study.

Conclusion

ACZ885 administration to methotrexate-refractory patients resulted in clinical improvement in a subset of patients. Additional studies to characterize efficacy in RA and to determine the optimal dose regimen appear warranted.

Trial Registration

ClinicalTrials.gov identifier NCT00619905.     

Circadian rhythm of glycoprotein secretion in the vas deferens of the moth, Spodoptera littoralis

Background  

Reproductive systems of male moths contain circadian clocks, which time the release of sperm bundles from the testis to the upper vas deferens (UVD) and their subsequent transfer from the UVD to the seminal vesicles. Sperm bundles are released from the testis in the evening and are retained in the vas deferens lumen overnight before being transferred to the seminal vesicles. The biological significance of periodic sperm retention in the UVD lumen is not understood. In this study we asked whether there are circadian rhythms in the UVD that are correlated with sperm retention.     

Selective incidence of the toarcian oceanic anoxic event on macroinvertebrate marine communities: a case from the Lusitanian basin,Portugal

A macroinvertebrate assemblage has been studied from the Thin Nodular Limestones Member (TNL) of the Fonte Coberta section (Lusitanian Basin, Portugal), giving special attention to its trace fossils. The assemblage was studied to analyse the influence of the Toarcian Oceanic Anoxic Event (T‐OAE) on the macroinvertebrate community. The TNL consists of thin alternations of marl/limestone and nodular limestone beds, showing clear differentiations from bottom to top. Integrative analysis of the macrofossil assemblage for the studied interval, conducted for the first time in the Lusitanian Basin, reveals three major features: (1) abundant trace fossils with dominance or near exclusiveness of Thalassinoides, and a local record of Spongeliomorpha; (2) scarcity, but not extinction, of ammonoids; and (3) the absence of previously abundant brachiopods. The findings reveal a selective incidence of the T‐OAE on the macrobenthic community, with a major influence (extinction) of brachiopods, severe changes (diminution in abundance and diversity) on ammonoids and a minor effect on macrobenthic tracemakers. A complex relationship between different palaeoenvironmental conditions during the T‐OAE can be interpreted, discarding anoxic conditions in the seafloor, although low oxygen conditions in the water column are a possibility. The increase in seawater temperature and availability of nutrients on the seafloor would have played an influential role.     

All Washed Out? Foliar Nutrient Resorption and Leaching in Senescing Switchgrass

Ideal bioenergy feedstocks are low in nutrients that act as anti-quality factors during conversion processes. Research has shown that delaying harvest of temperate perennial grasses until late winter reduces nutrient content, primarily due to end-season resorption, but also indicates a role for foliar nutrient leaching. While end-season resorption has been estimated, foliar nutrient leaching has not, and is a factor that could refine harvest recommendations. Additionally, establishing a baseline of mineral loss during switchgrass senescence will improve our understanding of leaf-level nutrient resorption. Therefore, we applied simulated rainfall to replicated (n = 5) plots within a previously established switchgrass stand to determine if heavy precipitation can induce nutrient leaching in senescing, unharvested foliage. Hour-long simulated rainfalls of ～120 mm were applied every 2 weeks from early September to a killing frost in 2014 and 2015. Leaf samples were taken from the upper and lower canopy before and after simulated rainfalls and from no-rain controls and analyzed for elemental N, P, K, S, Mg, and Ca. Nutrient resorption estimates ranged from 33 to 82% in control plots. Comparison of rainfall plots to controls indicated that lower canopy leaves, upon reaching ≥50% senescence, were slightly susceptible to foliar nutrient leaching, with losses ranging from 0.3 to 2.8 g kg^?1 dry matter for K, P, and Mg. Nitrogen, Ca, and S were not susceptible to foliar leaching. Although statistically significant (P ≤ 0.05), these values suggested that foliar leaching was not a strong driver of nutrient loss during senescence.