Variation in leaf and soil δ<Superscript>15</Superscript>N in diverse tree species in a lowland dipterocarp rainforest,Malaysia

Key message

Large variations in leaf δ ¹⁵ N in Bornean tropical rainforest trees may indicate that various tropical species have species-specific strategy for nitrogen uptake under low soil nutrient conditions, including root symbiotic microorganisms such as ectomycorrhiza.

Abstract

Lowland tropical rainforests in Southeast Asia are characterized by high species diversity despite limited soil nutrient conditions. The plant nitrogen isotope ratio (δ¹⁵N) reflects plant uptake of soil nitrogen. We analyzed δ¹⁵N values and nitrogen content (N %) in leaves and roots of 108 woody species with different types of symbiotic microorganisms, of different life forms (emergent, canopy, sub-canopy, understory, and canopy gap species), and from different families in a Bornean lowland dipterocarp forest to gain more insight into the diversity of nitrogen uptake strategy in the rhizosphere. Leaf δ¹⁵N values in the species studied varied largely from ?7.2 to 5.0 ‰, which is comparable to the values of known Asian trees including temperate, sub-tropical, and tropical mountain forests. Leaf δ¹⁵N also varied significantly among both life forms and families, though the phylogenetically independent contrast (PIC) relationships were not statistically significant among life form, family, and symbiotic types. Some families showed specific leaf δ¹⁵N values; Dipterocarpaceae, the dominant family in the canopy layer with symbiotic ectomycorrhiza in Southeast Asia, had small intraspecific variation and higher leaf δ¹⁵N values (0.03 ‰) compared with species exhibiting arbuscular mycorrhiza, whereas several families such as Burseraceae, Euphorbiaceae, and Myrtaceae showed large interspecific variation in leaf δ¹⁵N (e.g., from ?7.2 to 5.0 ‰ in Euphorbiaceae). These variations suggest that tropical species may have family- or species-specific strategy, such as root symbiotic microorganisms, for nitrogen uptake under low-nutrient conditions in tropical rainforests in Southeast Asia.

     

Roles of aldo-keto reductases 1B10 and 1C3 and ATP-binding cassette transporter in docetaxel tolerance

Docetaxel (DTX) is widely used for treatment of inveterate lung and prostate cancers, but its continuous administration elicits the hyposensitivity. Here, we established the DTX-resistant variants of human lung cancer A549 and androgen-independent prostate cancer Du145 cells and found that the resistance development provoked aberrant up-regulations of aldo-keto reductase (AKR) 1B10 and AKR1C3 in A549 and Du145 cells, respectively. In addition, the sensitivity to the DTX toxicity was significantly decreased and increased by overexpression and knockdown of the two AKR isoforms, respectively. Furthermore, the resistant cells exhibited a decreased level of reactive 4-hydroxy-2-nonenal formed during DTX treatment, and the decrease was alleviated by adding the AKR inhibitors, inferring that the two AKRs confer the chemoresistance through elevating the antioxidant properties. The development of DTX resistance was also associated with enhanced expression of an ATP-binding cassette (ABC) transporter ABCB1 among the ABC transporter isoforms. The combined treatment with inhibitors of the two AKRs and ABCB1 additively sensitized the resistant cells to DTX. Intriguingly, the AKR1B10 inhibitor also suppressed the lung cancer cross-resistance against cisplatin. The results suggest that combined treatment with AKRs (1B10 and 1C3) and ABCB1 inhibitors exerts overcoming effect against the cancer resistance to DTX and cisplatin, and can be used as the adjuvant therapy.     

The all pervasive principle of repetitious recurrence governs not only coding sequence construction but also human endeavor in musical composition

Organisms which have evolved on this earth are governed by multitudes of periodicities; tomorrow is another today, and the next year is going to be much like this year. Accordingly, the principle of repetitious recurrence pervades every aspect of life on this earth. Thus, individual genes in the genome have been duplicated and triplicated often to the point of redundancy, and each coding sequence consists of numerous variously truncated as well as variously base-substituted copies of the original primordial building block base oligomers and their allies. This principle even appears to govern the manifestations of human intellect; musical compositions also rely on this principle of repetitious recurrence. Accordingly, coding base sequences can be transformed into musical scores using one set rule. Conversely, musical scores can be transcribed to coding base sequences of long open reading frames.     

Growth-inhibitory activity of the d-mannan of saccharomyces cerevisiae X2180-1A-5 mutant strain against mouse-implanted sarcoma 180 and ehrlich-carcinoma solid tumor

The d-mannan of Saccharomyces cerevisiae X2180-1A-5 mutant strain, which possesses a main chain composed of α-(1→6) linked d-mannopyranosyl residues and a small proportion of branches composed of α-(1→2)- and α-(1→3)-linked d-mannopyranosyl residues, showed strong growth-inhibitory activity against mouse-implanted Sarcoma 180 and Ehrlich-carcinoma solid tumor. The observation that the level of this activity was nearly identical with that of the d-mannan of a wild-type strain of bakers' yeast, which possesses a high proportion of branches composed of α-(1→2)- and α-(1→3)-linked d-mannopyranosyl residues, suggests that the branches are not essential for antitumor activity. The partial acid-degradation products of both d-mannans, the molecular weight of which was one-third of that of each parent d-mannan, had only one half of the antitumor activity of the parent d-mannans. This suggests that molecular size is the most important factor for the differences in activity of the polysaccharides of wild and mutant strains.     

Cellular Expression, Developmental Regulation, and Phylogenic Conservation of PEA-15, the Astrocytic Major Phosphoprotein and Protein Kinase C Substrate

Abstract: PEA-15 has recently been identified as a major phosphoprotein in astrocytes and an endogenous substrate for protein kinase C. This 15-kDa protein exists under three molecular forms, an unphosphorylated form, N, and two phosphorylated forms, Pa and Pb. ntisera were raised against synthetic peptides corresponding to the internal sequences of the mouse protein containing the two specific phosphorylation sites and affinity-purified antibodies were used for immunoblotting. PEA-15 was found mainly in the cytosol, but its protein kinase C-phosphorylated form, Pb, was also detectable in association with the membrane and remained with the fraction that contains stabilized microtubules. Abundant in astrocytes, particularly in the hippocampus, PEA-15 was also detected in all cultured brain cell types examined, indicating a more ubiquitous distribution of the protein, further demonstrated by its detection in the eye and in the lung. Parallel to the increase in expression levels, phosphorylation of PEA-15 also increased during development. This paralleled results obtained in primary cultures, where PEA-15 levels increase with cell maturation. Finally, physiological importance of PEA-15 phosphorylation was illustrated by immunoreactivity observed in brain homogenates of different mammals, birds, amphibians, and fish.     

Intraspecific interference between native parasitoids modified by a non-native parasitoid and its consequence on population dynamics

1. The number of natural enemies that should be introduced to control a pest is a controversial subject in biocontrol. A previous semi-mechanistic model parameterised using a laboratory system consisting of two parasitoid wasps, Anisopteromalus calandrae and Heterospilus prosopidis, parasitising a pest beetle, Callosobruchus chinensis, indicated that the introduction of the non-native parasitoid H. prosopidis decreases the level of intraspecific interference between native A. calandrae females. The model also suggested that this decrease was the main factor destabilising the population dynamics of the host–parasitoid system, resulting in chaos. 2. To test this population-level decrease and host density independence in the interference of A. calandrae, we observed individual behaviours to quantify the level of intraspecific interference between two A. calandrae females in the presence or absence of H. prosopidis at two different host densities. 3. When H. prosopidis was present, the number of direct antagonistic interference events between A. calandrae females, sting duration, host feeding events (but not stinging events), and patch residence time were reduced. However, the presence of H. prosopidis decreased the patch residence time and the proportion of hosts parasitised by A. calandrae only when the host density was low. 4. The reduction in intraspecific interference between A. calandrae females by H. prosopidis and its host density independence support the population-level prediction, whereas the observed reduction in host-feeding behaviours in A. calandrae by H. prosopidis was not predicted. Overall pest control by the native parasitoid was unaffected by the non-native parasitoid as host density increased.     

OBO-Edit--an ontology editor for biologists

OBO-Edit is an open source, platform-independent ontology editor developed and maintained by the Gene Ontology Consortium. Implemented in Java, OBO-Edit uses a graph-oriented approach to display and edit ontologies. OBO-Edit is particularly valuable for viewing and editing biomedical ontologies. Availability: https://sourceforge.net/project/showfiles.php?group_id=36855.