Secondary succession in Acacia nilotica (L.) savanna in the Hluhluwe Game Reserve,South Africa

Analysis of aerial photographs indicates that woody plant biomass has rapidly increased in Hluhluwe Game Reserve over the last 40 years. Open Acacia nilotica savanna is being replaced by broadleaf species, especially Euclea spp. We were interested in whether this secondary successional shift was due to high numbers of seedlings establishing and growing to maturity under acacias (facilitation) or due to the release of already established, but suppressed individuals (gullivers) of the resprouting broadleaf species. We examined the recruitment patterns and size-class distributions (height, basal diameter) of important species in this savanna.Densities of euclea seedlings (<0.6 cm basal diameter) under Acacia nilotica were low (median of 0 and mean of 0.06 m²) below adult canopies and effectively zero in adjacent interspaces. No differences in numbers of other broadleaf species were found between open sites and under Acacia nilotica sites. Few large eucleas or other broadleaf species occurred under Acacia nilotica. Few Acacia nilotica recruits were found either under adults or in the open whereas Acacia karroo recruits were more common.The overall size class distribution for eucleas was dominated by individuals in the intermediate size class, suggesting that recruitment is not the dominant demographic process. We propose that the escape of intermediate sized eucleas from the fire trap has caused the increase in woody plants.Analysis of a time sequence of aerial photographs shows that invasion occurred rapidly between 1954 and 1975. A common feature for sites where woody plant invasion has taken place, was the presence of barriers to fire (especially roads). We suggest that the recent and rapid increase in woody vegetation is due to a decrease in the frequency of intense fires, rather than the recent absence of megaherbivores which allowed Acacia nilotica establishment. Few intense fires allow suppressed tree or shrub individuals, ('gullivers'), to escape the grass/fire layer and thereby become tall and fire-resistant. This release may explain the rapid rate of invasion by inherently slow growing broad-leaf species.     

Latent gene sequencing reveals familial relationships among Chinese Epstein-Barr virus strains and evidence for positive selection of A11 epitope changes

Epstein-Barr virus (EBV) strains from the highly HLA-A11-positive Chinese population are predominantly type 1 and show a variety of sequence changes (relative to the contemporary Caucasian prototype strain B95.8) in the nuclear antigen EBNA3B sequences encoding two immunodominant HLA-A11 epitopes, here called IVT and AVF. This has been interpreted by some as evidence of immune selection and by others as random genetic drift. To study epitope variation in a broader genomic context, we sequenced the whole of EBNA3B and parts of the EBNA2, 3A, and 3C genes from each of 31 Chinese EBV isolates. At each locus, type 1 viruses showed <2% nucleotide divergence from the B95.8 prototype while type 2 sequences remained even closer to the contemporary African prototype Ag876. However, type 1 isolates could clearly be divided into families based on linked patterns of sequence divergence from B95.8 across all four EBNA loci. Different patterns of IVT and AVF variation were associated with the different type 1 families, and there was additional epitope diversity within families. When the EBNA3 gene sequences of type 1 Chinese strains were subject to computer-based analysis, particular codons within the A11-epitope-coding region were among the few identified as being under positive or diversifying selection pressure. From these results, and the observation that mutant epitopes are consistently nonimmunogenic in vivo, we conclude that the immune selection hypothesis remains viable and worthy of further investigation.     

HLA-A11-restricted epitope polymorphism among Epstein-Barr virus strains in the highly HLA-A11-positive Chinese population: incidence and immunogenicity of variant epitope sequences

An individual's CD8(+)-cytotoxic-T-lymphocyte (CTL) response to Epstein-Barr virus (EBV) latent cycle antigens focuses on a small number of immunodominant epitopes often presented by just one of the available HLA class I alleles; for example, HLA-A11-positive Caucasians frequently respond to two immunodominant HLA A11 epitopes, IVTDFSVIK (IVT) and AVFDRKSDAK (AVF), within the nuclear antigen EBNA3B. Here, we reexamine the spectrum of EBV strains present in the highly HLA-A11-positive Chinese population for sequence changes in these epitopes relative to the Caucasian type 1 prototype strain B95.8. The IVT epitope was altered in 61 of 64 Chinese type 1 viruses, with four different sequence variants being observed, and the AVF epitope was altered in 46 cases with six different sequence variants; by contrast, all 10 Chinese type 2 viruses retained the prototype 2 epitope sequences. All but one of the type 1 epitope variants were poorly recognized by IVT- or AVF-specific CTLs in pulse-chase assays of peptide-mediated target cell lysis. More importantly, we screened HLA-A11-positive Chinese donors carrying viruses with known epitope mutations for evidence of epitope-specific CTL memory by enzyme-linked immunospot assays: none of the type 1 variants tested, nor the type 2 prototype, appeared to be immunogenic in vivo. The data remain consistent with the possibility that, during virus-host coevolution, pressure from the host CTL-mediated immune response has given A11 epitope-loss viruses a selective advantage.     

Facilitated selfing offers reproductive assurance: a mutualism between a hemipteran and carnivorous plant

Reproductive assurance is frequently used to explain the evolution of selfing but has become controversial from lack of evidence. We studied the pollination system of the near carnivorous plant genus Roridula and showed that reproductive assurance is important in this system. Hemipterans have a digestive mutualism with Roridula and have been implicated in pollination but flowers show adaptations to hymenopteran pollination. We deduce that hemipterans are the primary pollinators of Roridula because seed set is significantly reduced when hemipterans are excluded from the flowers. Using allozyme electrophoresis, we show that hemipterans are responsible for mostly selfed progeny. Although bees still pollinate Roridula on very rare occasions, their exclusion does not affect seed set. The complicated floral structures that occur in Roridula most likely evolved as adaptations for bee pollination. Resident hemipterans facilitate selfing by Roridula, and this acts as a reproductive assurance mechanism because it increases seed production and ensures that plants still reproduce in the absence of more motile, outcrossing pollinators.     

Antibody fragments from a ''single pot'' phage display library as immunochemical reagents.

The display of repertoires of antibody fragments on the surface of filamentous bacteriophage offers a new way of making antibodies with predefined binding specificities. Here we explored the use of this technology to make immunochemical reagents to a range of antigens by selection from a repertoire of > 10(8) clones made in vitro from human V gene segments. From the same 'single pot' repertoire, phage were isolated with binding activities to each of 18 antigens, including the intracellular proteins p53, elongation factor EF-1 alpha, immunoglobulin binding protein, rhombotin-2 oncogene protein and sex determining region Y protein. Both phage and scFv fragments secreted from infected bacteria were used as monoclonal and polyclonal reagents in Western blots. Furthermore the monoclonal reagents were used for epitope mapping (a new epitope of p53 was identified) and for staining of cells. This shows that antibody reagents for research can be readily derived from 'single pot' phage display libraries.     

The transport of alpha-aminoisobutyrate into Crithidia fasciculata.

The transport of alpha-aminoisobutyrate into Crithidia fasciculata was characterized under aerobic and anaerobic conditions. Kinetic data for alpha-aminoisobutyrate transport were consistent with the operation of a single system of broad specificity that showed no marked dependence on Na+. Under anaerobic conditions alpha-aminoisobutyrate transport was inhibited by uncouplers such as 2,4-dinitrophenol, lipophilic cations such as methyltriphenylphosphonium ion and adenosine triphosphatase inhibitors such as dicyclohexylcarbodi-imide and NaN3. A working model in which alpha-aminoisobutyrate enters this organism by an H+-symport mechanism, the electrochemical gradient of protons being maintained by an H+-translocating adenosine triphosphatase on the cytoplasmic membrane, is proposed.     

Turnover as a control of ribonucleic acid accumulation in bacteria undergoing stepdown.

The synthesis of ribosomes was compared in rel+ and rel- strains of Escherichia coli undergoing "stepdown" in growth from glucose medium to one with lactate as principal carbon source. Two strains (CP78 and CP79), isogenic except for rel, showed similar behaviour with respect to (1) the kinetics of labelling total RNA and ribosomes with exogenous uracil, (2) the proportion of newly formed protein that could be bound with nascent rRNA in mature ribosomes, and (3) the rate of induction of enzymically active beta-galactosidase (relative to the rate of ribosome synthesis). It was concluded that, as there was no net accumulation of RNA during stepdown in either strain, rRNA turnover must be occurring at a high rate. The general features of ribosome maturation in rel+ and rel- cells were almost identical with those found in auxotrophic rel+ organisms starved of required amino acids. In both cases, there was a considerable delay in the maturation of new ribosomal particles, owing to a relative shortfall in the rate of synthesis of ribosome-associated proteins. Only about 4-5% of the total protein labelled during stepdown was capable of binding with newly formed rRNA. This compared with 3.5% for rel+ and 0.5% for rel- auxotrophs during amino acid starvation. The turnover rate for newly formed mRNA and rRNA was virtually the same in "stepped-down" rel+ and rel- strains and was similar to that of the same fraction in amino acid-starved rel+ cells. The functional lifetime of mRNA was also identical. It seems that in the rel- strain many of the characteristics typical of the isogenic rel+ strain are displayed under these conditions, at least as regards the speed of ribosome maturation and the induction of beta-galactosidase. Studies on the thermolability of the latter enzyme induced during stepdown indicate that inaccurate translation, which occurs in rel- strains starved for only a few amino acids, is less evident in this situation than in straightforward amino acid deprivation.