Recognition mechanism of p63 by the E3 ligase Itch: Novel strategy in the study and inhibition of this interaction

The HECT-containing E3 ubiquitin ligase Itch mediates the degradation of several proteins, including p63 and p73, involved in cell specification and fate. Itch contains four WW domains, which are essential for recognition on the target substrate, which contains a short proline-rich sequence. Several signaling complexes containing these domains have been associated with human diseases such as muscular dystrophy, Alzheimer’s or Huntington’s diseases. To gain further insight into the structural determinants of the Itch-WW2 domain, we investigated its interaction with p63. We assigned, by 3D heteronuclear NMR experiments, the backbone and side chains of the uniformly ¹³C-¹⁵N-labeled Itch-WW2. In vitro interaction of Itch-WW2 domain with p63 was studied using its interactive p63 peptide, pep63. Pep63 is an 18-mer peptide corresponding to the region from 534–551 residue of p63, encompassing the PPxY motif that interacts with the Itch-WW domains, and we identified the residues involved in this molecular recognition. Moreover, here, a strategy of stabilization of the conformation of the PPxY peptide has been adopted, increasing the WW-ligand binding. We demonstrated that cyclization of pep63 leads to an increase of both the biological stability of the peptide and of the WW-ligand complex. Stable metal-binding complexes of the pep63 have been also obtained, and localized oxidative damage on Itch-WW2 domain has been induced, demonstrating the possibility of use of metal-pep63 complexes as models for the design of metal drugs to inhibit the Itch-WW-p63 recognition in vivo. Thus, our data suggest a novel strategy to study and inhibit the recognition mechanism of Itch E3-ligase.     

Improved characterization of the insulin secretory granule proteomes

Insulin secretory granules (ISGs) are pivotal organelles of pancreatic ß-cells and represent a key participant to glucose homeostasis. Indeed, insulin is packed and processed within these vesicles before its release by exocytosis. It is therefore crucial to acquire qualitative and quantitative data on the ISG proteome, in order to increase our knowledge on ISG biogenesis, maturation and exocytosis. Despites efforts made in the past years, the coverage of the ISG proteome is still incomplete and comprises many potential protein contaminants most likely coming from suboptimal sample preparations. We developed here a 3-step gradient purification procedure combined to Stable Isotope Labeling with Amino acids in Cell culture (SILAC) to further characterize the ISG protein content. Our results allowed to build three complementary proteomes containing 1/ proteins which are enriched in mature ISGs, 2/ proteins sharing multiple localizations including ISGs, and finally 3/ proteins sorted out from immature ISGs and/or co-purifying contaminants. As a proof of concept, the ProSAAS, a neuronal protein found in ISGs was further characterized and its granular localization proved. ProSAAS might represent a novel potential target allowing to better understand the defaults in insulin processing and secretion observed during type 2 diabetes progression. This article is part of a special issue entitled: Translational Proteomics.     

Lipopolysaccharide structures from Agrobacterium and Rhizobiaceae species

This review reports and discusses the structural and the biological data available for the lipopolysaccharides from the Gram-negative bacterium Agrobacterium together with those of other related Rhizobiaceae species.     

Emilin1 links TGF-beta maturation to blood pressure homeostasis

TGF-beta proteins are main regulators of blood vessel development and maintenance. Here, we report an unprecedented link between TGF-beta signaling and arterial hypertension based on the analysis of mice mutant for Emilin1, a cysteine-rich secreted glycoprotein expressed in the vascular tree. Emilin1 knockout animals display increased blood pressure, increased peripheral vascular resistance, and reduced vessel size. Mechanistically, we found that Emilin1 inhibits TGF-beta signaling by binding specifically to the proTGF-beta precursor and preventing its maturation by furin convertases in the extracellular space. In support of these findings, genetic inactivation of Emilin1 causes increased TGF-beta signaling in the vascular wall. Strikingly, high blood pressure observed in Emilin1 mutants is rescued to normal levels upon inactivation of a single TGF-beta1 allele. This study highlights the importance of modulation of TGF-beta availability in the pathogenesis of hypertension.     

Inhibition of species of the Aspergillus section Nigri and ochratoxin a production in grapes by fusapyrone

Fusapyrone (FP), an antifungal natural compound, was tested against the three main ochratoxigenic species of the Aspergillus section Nigri. The MICs at 24 h were 6.0, 11.6, and 9.9 mug/ml for Aspergillus carbonarius, Aspergillus tubingensis, and Aspergillus niger, respectively. Strong inhibition of growth and morphological changes were still observed at half the MIC after 7 days. The application of a 100 mug/ml FP solution in a laboratory assay on artificially inoculated grapes resulted in a significant reduction (up to 6 orders of magnitude) of A. carbonarius CFU counts. Dramatic reductions of the ochratoxin A (OTA) content, compared to the content of the positive control (average amount of OTA, 112.5 ng/g of grape; three experiments), were obtained with the application of either 100 or 50 mug/ml of FP (0.6 or 5.1 ng/g of grape, respectively).     

The value of abandoned olive groves for blackcaps (<Emphasis Type="Italic">Sylvia atricapilla</Emphasis>) in a Mediterranean agroecosystem: a year-round telemetry study

The European Common Agricultural Policy has promoted the intensification of productive olive orchards and the abandonment of the unproductive ones. This strategy has resulted in a significant loss of biodiversity and ecosystem functionality of this type of agroecosystem. Here, we studied the blackcap Sylvia atricapilla, a common frugivorous bird species, in an olive-dominated agroecosystem of southern Spain to assess the effects of the abandonment of olive groves and undergrowth structure on habitat selection in this species. By means of radiotelemetry, we determined habitat selection of blackcaps during both the breeding (N = 30) and the non-breeding (N = 27) seasons of 2011 and 2012. We found that outside the breeding season, olive groves were widely used by blackcaps, which invariably preferred abandoned olive groves over intensively managed ones. Additionally, deciduous woods and poplar plantation were positively selected, whereas open habitats and Pinus forests were avoided. Generally, woody habitats without undergrowth or with herbaceous undergrowth were avoided. During the breeding season, the species selected mainly riverine habitats and poplar plantations, favoring habitats with well-developed undergrowth. Our results suggest that the blackcap could benefit from maintaining patches of abandoned olive groves freely left to natural succession within intensive olive groves. In such a landscape, ecological services (i.e., seed dispersal provided by frugivorous birds) and functioning could also improve as a consequence of these measures.     

Rainfall,but not temperature,negatively affects the growth of Blue Tit Cyanistes caeruleus nestlings

Capsule: Growth trajectories of Blue Tit Cyanistes caeruleus nestlings differed between sexes and were negatively affected by rain but not by temperature during the linear growth phase (LGP).

Aims: To model the growth trajectories of Blue Tit nestlings and to identify the main ecological factors affecting them.

Methods: Sixty-five nestling Blue Tits from a population in northern Italy were weighed at regular intervals and sexed using molecular genetic techniques. The LGP period was identified and analysed to test for the influence of age, sex, hatching date, brood size, temperature and rainfall on individual daily growth rates during the LGP.

Results: Growth curves showed no pre-fledging mass loss. Body mass differed between the sexes, with males being 5% heavier than females at the pre-fledging stage. Daily growth rates during the LGP were higher for males and on non-rainy days, while they were not affected by other factors.

Conclusion: The higher daily growth rate observed in males during the LGP may determine the extent of sexual size dimorphism at the pre-fledging stage. Susceptibility of growth trajectories to environmental conditions was limited to rainfall and was similar in the two sexes. This contrasts with findings from previous studies, which found sex-biased environmental sensitivity of Blue Tit nestlings.