Molecular characterization of the type I IFN receptor in two woodchuck species and detection of its expression in liver samples from woodchucks infected with woodchuck hepatitis virus (WHV)

Type I interferons (IFN-α/β) serve as the first line of defense against viral infection and share the same type I IFN receptor (IFNAR) complex, which is composed of IFNAR1 and -2. The Eastern woodchuck (Marmota monax) and Chinese woodchuck (Marmota himalayana) are suitable for studying hepatitis B virus (HBV) infection. Here, the complete or partial sequences of the IFNARs of both species were obtained and analyzed. Small interference RNAs targeting wIFNAR1 and -2 specifically down-regulated the expression of wIFNAR1 and -2 and the IFN-stimulated gene MxA in a woodchuck cell line, respectively. IFNAR2 was significantly up-regulated in primary woodchuck hepatocytes stimulated with IFN-α or -γ. The expression of woodchuck IFNAR1 and -2 was decreased in woodchucks chronically infected with woodchuck hepatitis virus (WHV). These results are essential for studying type I IFN-related innate immunity and therapy in hepadnaviral infection in the woodchuck model.     

PharmGKB: the Pharmacogenetics Knowledge Base

The Pharmacogenetics Knowledge Base (PharmGKB; http://www.pharmgkb.org/) contains genomic, phenotype and clinical information collected from ongoing pharmacogenetic studies. Tools to browse, query, download, submit, edit and process the information are available to registered research network members. A subset of the tools is publicly available. PharmGKB currently contains over 150 genes under study, 14 Coriell populations and a large ontology of pharmacogenetics concepts. The pharmacogenetic concepts and the experimental data are interconnected by a set of relations to form a knowledge base of information for pharmacogenetic researchers. The information in PharmGKB, and its associated tools for processing that information, are tailored for leading-edge pharmacogenetics research. The PharmGKB project was initiated in April 2000 and the first version of the knowledge base went online in February 2001.     

Temporal modulation transfer functions in the barn owl (<Emphasis Type="Italic">Tyto alba</Emphasis>)

Barn owls (Tyto alba) have evolved several specializations in their auditory system to achieve the high sensory acuity required for prey capture, including superior processing of interaural time differences and phase coding in the auditory periphery. Here, we tested whether barn owls are capable of high temporal resolution that may be a prerequisite for the accuracy in binaural processing. Temporal resolution was measured psychoacoustically and demonstrated in temporal modulation transfer functions. Four barn owls were trained in an operant task with food reward to detect sinusoidal amplitude modulations within an 800-ms gated white-noise burst or 800-ms periods of modulation in continuous white noise (spectrum levels of -5 dB and 15 dB SPL). Within the range of tested amplitude modulation frequencies from 5 Hz to 1280 Hz, barn owls' detection thresholds were lowest at 10-20 Hz. This sensitivity corresponds to an intensity-difference limen of between 0.9 dB and 1.4 dB. For all conditions, temporal modulation transfer functions showed band-pass characteristics with a high-frequency cutoff in the range of 37 Hz to 92 Hz, corresponding to minimum integration times of 4.3 ms and 1.7 ms, respectively. In summary, these data indicate a temporal resolution in the owl's auditory system that is good, but not unusual, compared to other vertebrates.     

Outline of A New Approach to Evaluate Ecological Integrity of Salt Marshes

The integrity of coastal salt marshes can be determined from the extent to which they provide key ecosystem services: food and habitat for fish and wildlife, good water quality, erosion and flood control, and recreation and cultural use. An outline of a new approach for linking ecosystem services with metrics of structure and function to evaluate the ecological integrity of salt marshes is described. One main objective of the approach is to determine whether differences in structure and function can be detected among salt marshes with similar geomorphology and hydrology but different degrees of anthropogenic stress. The approach is currently being applied to salt marshes of Narragansett Bay, RI, USA. Stable nitrogen isotopic ratios of the marsh biota reflected the nitrogen sources from the adjacent watersheds and were significantly correlated with percent residential land use. Results show that plant zonation significantly ( r = —0.82; p < 0.05) relates with percent residential land use and is potentially a sensitive indicator of anthropogenic disturbance of New England salt marshes. We are currently examining species diversity, denitrification rates, and susceptibility to erosion among the sites for additional indicators of salt marsh condition. Our results to date suggest that this approach will provide the methods needed for managers to systematically monitor and evaluate the integrity of salt marshes     

Stereospecific synthesis of trans-arachidonic acids.

An effective synthesis is described for the preparation of all four mono trans isomers of arachidonic acid via deoxidation of epoxide precursors with lithium diphenylphosphide and quaternization with methyl iodide.     

Urban bird trends in a rapidly growing tropical city

Long-term studies of urban birds are relatively scarce, especially in Africa. We analysed trends in species richness and bird species occurrence over a 32-year period in Kampala, Uganda, in order to assess changes in the bird community in a period that has shown rapid expansion of the city's human population. Given that species may respond to urbanisation according to their diet, we also analysed bird community trends of species groups defined according to predominant diet. There was an overall decline in species richness that was largely driven by declines in insectivores and granivores. General declines were evident also when the trends in the most common individual species in these two groups were considered. The occurrence of the commonest predator and scavenger species tended to increase over the period considered. Insectivorous species are likely to be especially affected by increasing urbanisation due to air pollution. Predators and scavengers are likely to have benefitted from the inability of municipal waste management to keep pace with growth in the human population, hence providing more potential food resources. Both insectivores and predators/scavengers are therefore good candidates for the development of urban indicators.     

Effects of backbone modification on helical peptides: The reduced carbonyl modification

Reducing a CO to a CH₂ moiety in a peptide bond destroys the ability of the peptide link to act as a proton acceptor in a hydrogen-bonded structure. Here, this modification is introduced into different positions of the helical peptide, acetyl-WGG(RAAAA)₄R-amide, and the melting of these peptides is followed using CD. Effects of this modification on helical peptides are compared to our previous N-methylation studies [C. F. Chang and M.H. Zehfus (1996) Biopolymers, Vol. 40, pp. 609–616]. While the experiments were designed to remove the same hydrogen bond from the peptide, no consistent results are obtained between these two modifications. This result suggests that these modifications not only break the backbone hydrogen bonds, but also involve other destabilizing effects. When our data is analyzed using different helix-coil transition models, the results show that as the models increase in complexity the energy associated with a single residue modification increases. Unfortunately, the most detailed dichroic model, which should best describe this system, works for only one peptide. Apparently, the models need to be further improved to better mimic our system. © 1998 John Wiley & Sons, Inc. Biopoly 46: 181–193, 1998     

Brood size manipulations reveal relationships among physiological performance,body condition and plumage colour in Northern Flicker Colaptes auratus nestlings

Visual signals of quality in offspring, such as plumage colour, should honestly advertise need and/or body condition, but links between nutritional status, physiological performance and the expression of colours are complex and poorly understood. We assess how food stress during rearing affected two physiological measures (T‐cell‐mediated immune function and corticosterone level in feathers: CORT_f) and how these two variables were related to carotenoid and melanin coloration in Northern Flicker Colaptes auratus nestlings. We were also interested in how these two physiological measures were influenced by the sex of the nestling. We experimentally manipulated brood size to alter levels of food availability to nestlings during development. We measured carotenoid‐based colour (chroma and brightness) in wing feathers and the size of melanin spots on breast feathers. In agreement with our prediction, nestlings in the reduced brood treatment had better body condition and stronger immune responses than those in the control and brood enlargement treatments. This supports the hypothesis that immune responses are energetically costly. In contrast, CORT_f was not related to nestling body condition or sex and was unaffected by brood size manipulation. Nestlings of both sexes with stronger T‐cell‐mediated immune responses had larger melanin spots but only males with higher immune responses also had brighter flight feathers. Feather brightness decreased with increasing CORT_f levels. Our study is one of the few to examine the relationship between multiple physiological and plumage measures in nestlings and shows that plumage colour and immune function signalled body condition of nestlings, but that feather corticosterone levels did not.