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961.
Niedzwiecka A Marcotrigiano J Stepinski J Jankowska-Anyszka M Wyslouch-Cieszynska A Dadlez M Gingras AC Mak P Darzynkiewicz E Sonenberg N Burley SK Stolarski R 《Journal of molecular biology》2002,319(3):615-635
mRNA 5'-cap recognition by the eukaryotic translation initiation factor eIF4E has been exhaustively characterized with the aid of a novel fluorometric, time-synchronized titration method, and X-ray crystallography. The association constant values of recombinant eIF4E for 20 different cap analogues cover six orders of magnitude; with the highest affinity observed for m(7)GTP (approximately 1.1 x 10(8) M(-1)). The affinity of the cap analogues for eIF4E correlates with their ability to inhibit in vitro translation. The association constants yield contributions of non-covalent interactions involving single structural elements of the cap to the free energy of binding, giving a reliable starting point to rational drug design. The free energy of 7-methylguanine stacking and hydrogen bonding (-4.9 kcal/mol) is separate from the energies of phosphate chain interactions (-3.0, -1.9, -0.9 kcal/mol for alpha, beta, gamma phosphates, respectively), supporting two-step mechanism of the binding. The negatively charged phosphate groups of the cap act as a molecular anchor, enabling further formation of the intermolecular contacts within the cap-binding slot. Stabilization of the stacked Trp102/m(7)G/Trp56 configuration is a precondition to form three hydrogen bonds with Glu103 and Trp102. Electrostatically steered eIF4E-cap association is accompanied by additional hydration of the complex by approximately 65 water molecules, and by ionic equilibria shift. Temperature dependence reveals the enthalpy-driven and entropy-opposed character of the m(7)GTP-eIF4E binding, which results from dominant charge-related interactions (DeltaH degrees =-17.8 kcal/mol, DeltaS degrees= -23.6 cal/mol K). For recruitment of synthetic eIF4GI, eIF4GII, and 4E-BP1 peptides to eIF4E, all the association constants were approximately 10(7) M(-1), in decreasing order: eIF4GI>4E-BP1>eIF4GII approximately 4E-BP1(P-Ser65) approximately 4E-BP1(P-Ser65/Thr70). Phosphorylation of 4E-BP1 at Ser65 and Thr70 is insufficient to prevent binding to eIF4E. Enhancement of the eIF4E affinity for cap occurs after binding to eIF4G peptides. 相似文献
962.
Chmielewski M Nieweglowski T Swierczynski J Rutkowski B Boguslawski W 《Molecular and cellular biochemistry》2001,228(1-2):33-37
Changes in lipid metabolism are an important risk factor for vascular complications during chronic renal failure (CRF). In experimental CRF hypercholesterolemia has been found to be the main lipid disorder. It is probably due to enhanced cholesterologenesis. Mechanisms of these changes remain poorly understood. It is well known that activity of cholesterologenesis undergoes a significant diurnal rhythm. However, there was no evidence that this rhythm is still present in the course of experimental CRF. Results of our studies indicate that in contrast to puromycin induced nephrotic syndrome, diurnal rhythm of cholesterologenesis in CRF rats is preserved both in liver and in the intestine tissue. Significant higher incorporation of tritiated water into cholesterol fraction was found in vivo both in liver as well as in intestine of CRF rats, as compared to control animals. Increased (with comparison to the controls) incorporation of 14C-acetate, and 3H-mevalonate into CRF rat liver sterols indicate that mechanism of enhanced cholesterologenesis is more complex than simply due to the elevated level of mevalonate (potential substrate for cholesterologenesis) which has been reported in plasma of CRF animals. 相似文献
963.
In this paper we give a derivation for the allometric scaling relation between the metabolic rate and the mass of animals and plants. We show that the characteristic scaling exponent of 3/4 occurring in this relation is a result of the distribution of sources and sinks within the living organism. We further introduce a principle of least mass and discuss the kind of flows that arise from it. 相似文献
964.
965.
Katarzyna Pustelny Michal Zdzalik Natalia Stach Justyna Stec-Niemczyk Przemyslaw Cichon Anna Czarna Grzegorz Popowicz Pawel Mak Marcin Drag Guy S. Salvesen Benedykt Wladyka Jan Potempa Adam Dubin Grzegorz Dubin 《The Journal of biological chemistry》2014,289(22):15544-15553
Staphylococcal SplB protease belongs to the chymotrypsin family. Chymotrypsin zymogen is activated by proteolytic processing at the N terminus, resulting in significant structural rearrangement at the active site. Here, we demonstrate that the molecular mechanism of SplB protease activation differs significantly and we characterize the novel mechanism in detail. Using peptide and protein substrates we show that the native signal peptide, or any N-terminal extension, has an inhibitory effect on SplB. Only precise N-terminal processing releases the full proteolytic activity of the wild type analogously to chymotrypsin. However, comparison of the crystal structures of mature SplB and a zymogen mimic show no rearrangement at the active site whatsoever. Instead, only the formation of a unique hydrogen bond network, distant form the active site, by the new N-terminal glutamic acid of mature SplB is observed. The importance of this network and influence of particular hydrogen bond interactions at the N terminus on the catalytic process is demonstrated by evaluating the kinetics of a series of mutants. The results allow us to propose a consistent model where changes in the overall protein dynamics rather than structural rearrangement of the active site are involved in the activation process. 相似文献
966.
Magdalena M. Richter Jaroslaw Poznanski Anna Zdziarska Mariusz Czarnocki-Cieciura Zoltan Lipinszki Michal Dadlez David M. Glover Marcin R. Przewloka 《Open biology》2016,6(2)
The kinetochore provides a physical connection between microtubules and the centromeric regions of chromosomes that is critical for their equitable segregation. The trimeric Mis12 sub-complex of the Drosophila kinetochore binds to the mitotic centromere using CENP-C as a platform. However, knowledge of the precise connections between Mis12 complex components and CENP-C has remained elusive despite the fundamental importance of this part of the cell division machinery. Here, we employ hydrogen–deuterium exchange coupled with mass spectrometry to reveal that Mis12 and Nnf1 form a dimer maintained by interacting coiled-coil (CC) domains within the carboxy-terminal parts of both proteins. Adjacent to these interacting CCs is a carboxy-terminal domain that also interacts with Nsl1. The amino-terminal parts of Mis12 and Nnf1 form a CENP-C-binding surface, which docks the complex and thus the entire kinetochore to mitotic centromeres. Mutational analysis confirms these precise interactions are critical for both structure and function of the complex. Thus, we conclude the organization of the Mis12–Nnf1 dimer confers upon the Mis12 complex a bipolar, elongated structure that is critical for kinetochore function. 相似文献
967.
968.
Fengqun Meng Philip W. Rundel M. Rasoul Sharifi Nitsan Bar-Shmuel Michal Segoli 《Ecological Entomology》2020,45(1):36-44
1. Herbivores and parasites are likely to impose less damage on their host when their growth rate is slow and their dependency on the host is high. Accordingly, it was hypothesised that evolution would favour neutral or even beneficial interactions between a below-ground herbivore and a plant during the harsh season in a desert ecosystem. 2. This study characterised the relationship between the summer annual plant Salsola inermis Forssk (Chenopodiaceae) and weevils developing in a mud chamber attached to its roots in the Negev Desert of Israel. Plant seedlings were exposed to adult weevils (Conorhynchus palumbus Olivier or Menecleonus virgatus Schoenherr; Coleoptera: Curculionidae) in a controlled outside setting, to induce oviposition and larval establishment. The following were quantified: plant growth, above-ground biomass, fruit biomass, and fruit size, as well as relative C and N contents, and isotopic signatures (δ13C and δ15N) in plant tissues. 3. Exposure to weevils did not reduce plant survival but significantly and negatively affected plant growth and seed production. However, these effects were mainly due to above-ground herbivory by adults rather than root herbivory by larvae, and might have been overestimated. Interestingly, %N and δ15N were significantly higher, and the C:N ratio was significantly lower, in plants with larval establishment, suggesting that weevils affect the plant nitrogen budget. 4. The overall results do not support the notion of mutualistic interactions; yet, slow consumption, a low infestation level, and, possibly, N supplementation to the plant may enable the plant to tolerate herbivory under natural conditions. 相似文献
969.
Ján Lí?KA Július BRTKO Michal DUBOVICKY Dana MACEJOVá Viktória KISSOVá ?tefan POLáK Eduard UJHáZY 《Experimental Animals》2016,65(1):1-9
The mammary gland is a dynamic organ that undergoes structural and functional changes
associated with growth, reproduction, and post-menopausal regression. The postnatal
transformations of the epithelium and stromal cells of the mammary gland may contribute to
its susceptibility to carcinogenesis. The increased cancer incidence in mammary glands of
humans and similarly of rodents in association with their development is believed to be
partly explained by proliferative activity together with lesser degree of differentiation,
but it is not completely understood how the virgin gland retains its higher susceptibility
to carcinogenesis. During its developmental cycle, the mammary gland displays many of the
properties associated with breast cancer. An early first full-term pregnancy may have a
protective effect. Rodent models are useful for investigating potential breast
carcinogens. The purpose of this review is to help recognizing histological appearance of
the epithelium and the stroma of the normal mammary gland in rats, and throughout its
development in relation to tumorigenic potential. 相似文献
970.
Alexandra Zinoviev M��lissa L��ger Gerhard Wagner Michal Shapira 《Nucleic acids research》2011,39(19):8404-8415
In eukaryotes, exposure to stress conditions causes a shift from cap-dependent to cap-independent translation. In trypanosomatids, environmental switches are the driving force of a developmental program of gene expression, but it is yet unclear how their translation machinery copes with their constantly changing environment. Trypanosomatids have a unique cap structure (cap-4) and encode four highly diverged paralogs of the cap-binding protein, eIF4E; none were found to genetically complement a yeast mutant failing to express eIF4E. Here we show that in promastigotes, a typical cap-binding complex is anchored through LeishIF4E-4, which associates with components of the cap-binding pre-initiation complex. In axenic amastigotes, expression of LeishIF4E-4 decreases and the protein does not bind the cap, whereas LeishIF4E-1 maintains its expression level and associates with the cap structure and with translation initiation factors. However, LeishIF4E-1 does not interact with eIF4G-like proteins in both life stages, excluding its involvement in cap-dependent translation. Using pull-down assays and mass-spectrometry, we identified a novel, non-conserved 4E-Interacting Protein (Leish4E-IP), which binds to LeishIF4E-1 in promastigotes, but not in amastigotes. Yeast two-hybrid and NMR spectroscopy confirmed the specificity of this interaction. We propose that Leish4E-IP is a translation regulator that is involved in switching between cap-dependent and alternative translation pathways. 相似文献