Natural born killers: an invasive amphipod is predatory throughout its life-history

Introduced predators can have profound impacts on prey populations, with subsequent ramifications throughout entire ecosystems. However, studies of predator–prey interaction strengths in community and food-web analyses focus on adults or use average body sizes. This ignores ontogenetic changes, or lack thereof, in predatory capabilities over the life-histories of predators. Additionally, large individual predators might not be physically capable of consuming very small prey individuals. Both situations are important to resolve, as native prey may or may not therefore experience ontogenetic or size refuges from invasive predators. Here, we find that the freshwater amphipod invader, Gammarus pulex, is predatory throughout its development from juvenile through to adult. All size classes collected in the field had a common prey, nymphs of the mayfly Baetis rhodani, in their guts. In an experiment with predator, prey and experimental arenas scaled for body size, G. pulex juveniles and adults consumed B. rhodani in all size-matched categories. In a second experiment, the largest G. pulex individuals were able to prey on the smallest B. rhodani. Thus, the prey do not benefit from any ontogenetic or size refuge from the predator. This corroborates with the known negative population abundance relationships between this invasive predator and its native prey species. Understanding and predicting invasive predator impacts will be best served when interactions among all life-history stages of predator and prey are considered.     

Early life-history processes and their implications for the invasion of the barnacle Balanus glandula

As invasions become increasingly prevalent, it is important to understand how spread may be moderated by environmental conditions. This study considered the effect of location and changing substratum temperature on the early life-history processes of the alien barnacle Balanus glandula and its native comparator, Chthamalus dentatus, along the South African coast. Using settlement plates of different colours, temperature was manipulated to assess settlement, mortality, recruitment and growth of the two species. These variables were tracked over 10 weeks using repeat photography. Unexpectedly, there was no evidence of an effect of temperature on early life-history processes of either species. Settlement by the two barnacles was spatially segregated, with B. glandula occurring only on the West Coast where it is the dominant intertidal barnacle, while C. dentatus settled only on the South Coast, which has only recently been invaded by the alien. Despite this, it was notable that the relative settlement of B. glandula on rock was higher than that of C. dentatus. However, the lack of mortality of the native resulted in comparable levels of recruitment among the species. Nonetheless, the propensity of B. glandula to settle sporadically, coupled with fast growth, suggests that the invader may still possess the ability to become dominant along the newly invaded South Coast. This study highlights that measurements of early life-history parameters may not adequately predict the future range and impacts of alien species unless interpreted within the broader context of the nature of the recipient region and species-specific traits of the invader.     

Phenoloxidase Activity Acts as a Mosquito Innate Immune Response against Infection with Semliki Forest Virus

Several components of the mosquito immune system including the RNA interference (RNAi), JAK/STAT, Toll and IMD pathways have previously been implicated in controlling arbovirus infections. In contrast, the role of the phenoloxidase (PO) cascade in mosquito antiviral immunity is unknown. Here we show that conditioned medium from the Aedes albopictus-derived U4.4 cell line contains a functional PO cascade, which is activated by the bacterium Escherichia coli and the arbovirus Semliki Forest virus (SFV) (Togaviridae; Alphavirus). Production of recombinant SFV expressing the PO cascade inhibitor Egf1.0 blocked PO activity in U4.4 cell- conditioned medium, which resulted in enhanced spread of SFV. Infection of adult female Aedes aegypti by feeding mosquitoes a bloodmeal containing Egf1.0-expressing SFV increased virus replication and mosquito mortality. Collectively, these results suggest the PO cascade of mosquitoes plays an important role in immune defence against arboviruses.     

Does Investment in the Sexes Differ When Fathers Are Absent?

This study examines child survival and growth in a patrilineal Ethiopian community as a function of father absence and sex. In line with evolutionary predictions for sex-biased parental investment, the absence of a father and associated constraints on household resources is more detrimental for sons’ than daughters’ survival in infancy. Father absence doubles a son’s risk of dying in infancy but has a positive influence on the well-being of female members of the household, improving daughter survival, growth, and maternal nutritional status. Lack of paternal investment may be compensated for by other matrilateral kin through increased reciprocity between mother, daughter, and sister.

The Laforin–Malin Complex,Involved in Lafora Disease,Promotes the Incorporation of K63-linked Ubiquitin Chains into AMP-activated Protein Kinase β Subunits

Lafora progressive myoclonus epilepsy is a fatal neurodegenerative disorder caused by defects in the function of at least two proteins: laforin, a dual-specificity protein phosphatase, and malin, an E3-ubiquitin ligase. In this study, we report that a functional laforin–malin complex promotes the ubiquitination of AMP-activated protein kinase (AMPK), a serine/threonine protein kinase that acts as a sensor of cellular energy status. This reaction occurs when any of the three AMPK subunits (α, β, and γ) are expressed individually in the cell, and it also occurs on AMPKβ when it is part of a heterotrimeric complex. We also report that the laforin–malin complex promotes the formation of K63-linked ubiquitin chains, which are not involved in proteasome degradation. On the contrary, this modification increases the steady-state levels of at least AMPKβ subunit, possibly because it leads to the accumulation of this protein into inclusion bodies. These results suggest that the modification introduced by the laforin–malin complex could affect the subcellular distribution of AMPKβ subunits.     

A uniform system for microRNA annotation

MicroRNAs (miRNAs) are small noncoding RNA gene products about 22 nt long that are processed by Dicer from precursors with a characteristic hairpin secondary structure. Guidelines are presented for the identification and annotation of new miRNAs from diverse organisms, particularly so that miRNAs can be reliably distinguished from other RNAs such as small interfering RNAs. We describe specific criteria for the experimental verification of miRNAs, and conventions for naming miRNAs and miRNA genes. Finally, an online clearinghouse for miRNA gene name assignments is provided by the Rfam database of RNA families.     

Advances in micrometeorological methods for the measurement and interpretation of gas and particle nitrogen fluxes

The application of micrometeorology for flux measurements of nitrogen species between terrestrial ecosystems and the atmosphere and some of their main limitations are reviewed. New methods which are gaining rapid acceptance such as relaxed eddy accumulation are also described. A new development to provide long term average fluxes by time averaged gradients is shown to yield long-term average NH₃ fluxes over moorland within 10% of values obtained using continuous wet denuder methods and at less than 10% of the cost. The use of mass balance methods to quantify fluxes at the plot, landscape and regional scale are described, and show that in suitable conditions and for some countries, methods to check national inventories of radiatively active gases are now available.     

Impact of color-coded and warning nutrition labelling schemes: A systematic review and network meta-analysis

BackgroundSuboptimal diets are a leading risk factor for death and disability. Nutrition labelling is a potential method to encourage consumers to improve dietary behaviour. This systematic review and network meta-analysis (NMA) summarises evidence on the impact of colour-coded interpretive labels and warning labels on changing consumers’ purchasing behaviour.Methods and findingsWe conducted a literature review of peer-reviewed articles published between 1 January 1990 and 24 May 2021 in PubMed, Embase via Ovid, Cochrane Central Register of Controlled Trials, and SCOPUS. Randomised controlled trials (RCTs) and quasi-experimental studies were included for the primary outcomes (measures of changes in consumers’ purchasing and consuming behaviour). A frequentist NMA method was applied to pool the results. A total of 156 studies (including 101 RCTs and 55 non-RCTs) nested in 138 articles were incorporated into the systematic review, of which 134 studies in 120 articles were eligible for meta-analysis. We found that the traffic light labelling system (TLS), nutrient warning (NW), and health warning (HW) were associated with an increased probability of selecting more healthful products (odds ratios [ORs] and 95% confidence intervals [CIs]: TLS, 1.5 [1.2, 1.87]; NW, 3.61 [2.82, 4.63]; HW, 1.65 [1.32, 2.06]). Nutri-Score (NS) and warning labels appeared effective in reducing consumers’ probability of selecting less healthful products (NS, 0.66 [0.53, 0.82]; NW,0.65 [0.54, 0.77]; HW,0.64 [0.53, 0.76]). NS and NW were associated with an increased overall healthfulness (healthfulness ratings of products purchased using models such as FSAm-NPS/HCSP) by 7.9% and 26%, respectively. TLS, NS, and NW were associated with a reduced energy (total energy: TLS, −6.5%; NS, −6%; NW, −12.9%; energy per 100 g/ml: TLS, −3%; NS, −3.5%; NW, −3.8%), sodium (total sodium/salt: TLS, −6.4%; sodium/salt per 100 g/ml: NS: −7.8%), fat (total fat: NS, −15.7%; fat per 100 g/ml: TLS: −2.6%; NS: −3.2%), and total saturated fat (TLS, −12.9%; NS: −17.1%; NW: −16.3%) content of purchases. The impact of TLS, NS, and NW on purchasing behaviour could be explained by improved understanding of the nutrition information, which further elicits negative perception towards unhealthful products or positive attitudes towards healthful foods. Comparisons across label types suggested that colour-coded labels performed better in nudging consumers towards the purchase of more healthful products (NS versus NW: 1.51 [1.08, 2.11]), while warning labels have the advantage in discouraging unhealthful purchasing behaviour (NW versus TLS: 0.81 [0.67, 0.98]; HW versus TLS: 0.8 [0.63, 1]). Study limitations included high heterogeneity and inconsistency in the comparisons across different label types, limited number of real-world studies (95% were laboratory studies), and lack of long-term impact assessments.ConclusionsOur systematic review provided comprehensive evidence for the impact of colour-coded labels and warnings in nudging consumers’ purchasing behaviour towards more healthful products and the underlying psychological mechanism of behavioural change. Each type of label had different attributes, which should be taken into consideration when making front-of-package nutrition labelling (FOPL) policies according to local contexts. Our study supported mandatory front-of-pack labelling policies in directing consumers’ choice and encouraging the food industry to reformulate their products.Protocol registryPROSPERO (CRD42020161877).

Jing Song and co-workers report a systematic review and network meta-analysis assessing evidence on food labeling and purchasing decisions.     

iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions

SUMMARY: There are many resources that contain information about binary interactions between proteins. However, protein interactions are defined by only a subset of residues in any protein. We have implemented a web resource that allows the investigation of protein interactions in the Protein Data Bank structures at the level of Pfam domains and amino acid residues. This detailed knowledge relies on the fact that there are a large number of multidomain proteins and protein complexes being deposited in the structure databases. The resource called iPfam is hosted within the Pfam UK website. Most resources focus on the interactions between proteins; iPfam includes these as well as interactions between domains in a single protein. AVAILABILITY: iPfam is available on the Web for browsing at http://www.sanger.ac.uk/Software/Pfam/iPfam/; the source-data for iPfam is freely available in relational tables via the ftp site ftp://ftp.sanger.ac.uk/pub/databases/Pfam/database_files/.