Biomonitoring urban fluvial contamination on the basis of physiological stress induced in transplants of the aquatic moss Fontinalis antipyretica Hedw.

We examined the effects of urban-derived fluvial contamination on aquatic bryophytes with the aim of improving use of these organisms for active biomonitoring of this type of contamination. Samples of the aquatic moss Fontinalis antipyretica were transplanted to five sites of a river affected by different levels of urban contamination. The aquatic contamination was characterized by a series of physical and chemical parameters, which were then related to the physiological responses determined in transplants of the bryophyte. Comparison of the data revealed the physiological parameters that best differentiated between levels of contamination. The active biomonitoring technique proved to be a clear and rapid method of determining the existence of a contamination gradient on the basis of the degree of pigmentary and photosynthetic stress in the moss transplants. Of the parameters considered, the concentration of phaeopigments and the net photosynthetic rate provided the clearest responses.     

Age validation of juvenile Notothenia rossii at Potter Cove, South Shetland Islands, using mark-recapture data

Among all validation methods of age determination in fish, release of known age and marked specimens gives the most reliable information. We carried out a tag-recapture experiment on Notothenia rossii at Potter Cove, to validate, for first time for this species using this method, the principle of annual deposition of an annulus in scales and otoliths. Of 132 juvenile specimens (TL = 22.1–38.1 cm) tagged and released in successive years from 2004 to 2010, 7 were recaptured at the same site after periods of 1–13 months. In scales of five specimens recovered after 10–13 months, one extra annulus was laid down, exhibiting an additional winter zone of closely spaced sclerites. Consistently, the same analysis in two individuals marked and recaptured during the same summer, after 1–3 months at liberty, did not show the deposition of an additional annulus. All the fish tagged or recaptured during the experiment period (December to March) showed in their scales an edge zone of widely spaced sclerites, in agreement with the known pattern of growth in summer. Likewise, an analysis in selected specimens showed good consistency between the numbers of sclerites deposited in scales and the time of fish release. The comparative analysis between scales taken at recapture and otoliths of the same individual allowed a simultaneous counting of the annuli with complete correspondence. The growth in length of fish ranged from 0.5 to 6.1 cm, depending on the time of release.     

Early ontogeny of the mackerel icefish, Champsocephalus gunnari, in the southern Scotia Arc

During the early ontogeny of fishes, the timing and duration of key events such as larval hatching and the switch from endogenous to exogenous feeding largely determine the offspring viability and survival. The aim of the present study was to investigate the life history traits of the early larvae of the mackerel icefish, Champsocephalus gunnari, collected in summer south of the South Shetland Islands in the Bransfield Strait and north of Elephant Island. Through the analysis of sagittal otolith microstructure, we assessed the timing and duration of egg incubation, larval hatching, first exogenous feeding, rate of yolk resorption and body growth rate. Compared to populations living further north (i.e. around South Georgia and Kerguelen Islands), mackerel icefish in the southern Scotia Arc exhibits longer egg incubation (lasting 90–120 days from winter to summer) and delayed hatching time spread over a relatively short period lasting 26 days between January and February. The first exogenous feeding takes place between 13 and 24 days after hatching still in the presence of the yolk-sac, indicating a prolonged mixed feeding afterward. The specific growth rate or daily percentage change in size (G) was 1.9 % SL day^?1, corresponding to a daily growth rate at mean size of 0.31 mm day^?1. While showing significant differences in early life history traits across their geographical distribution, C. gunnari populations share a common strategy, spawning a small number of large eggs that hatch in relatively large-sized larvae, at a time which may be independent of the timing of pack-ice retreat and onset of the production cycle.     

Age and growth of the small red scorpionfish, Scorpaena notata Rafinesque, 1810, based on whole and sectioned otolith readings

Age and growth of Scorpaena notata from the northern Adriatic Sea were investigated by annual growth increment counts (annuli). Overall, age and growth were estimated from 538 specimens of S. notata ranging between 47 and 199 mm TL. No clear sexual dimorphism in size was observed. Annual deposition of annuli and location of the first annulus have been validated by edge analysis and daily growth increment counts, respectively. The estimated age range was between 0?C16 years for female and 0?C14 years for males. The estimated values of Von Bertalanffy asymptotic length $ {{\text{L}}_{\infty }} $ (cm) and k (years^?1) were 16.3 and 0.46 for males and 15.6 and 0.35 for females. Thus, males of S. notata appeared to attain a slightly larger size at faster rate than females. The growth performance index ranged between 1.9 and 2.1, which is in the middle of the range observed in other scorpaenids. Comparing ageing data of S. notata with other Mediterranean scorpaenids, a direct relationship between fish size and growth performance was observed.     

Chaperonins: two rings for folding

Chaperonins are ubiquitous chaperones found in Eubacteria, eukaryotic organelles (group I), Archaea and the eukaryotic cytosol (group II). They all share a common structure and a basic functional mechanism. Although a large amount of information has been gathered for the simpler group I, much less is known about group II chaperonins. Recent crystallographic and electron microscopy structures have provided new insights into the mechanism of these chaperonins and revealed important differences between group I and II chaperonins, mainly in the molecular rearrangements that take place during the functional cycle. These differences are evident for the most complex chaperonin, the eukaryotic cytosolic CCT, which highlights the uniqueness of this important molecular machine.     

Divide and polarize: recent advances in the molecular mechanism regulating epithelial tubulogenesis

Epithelial organs are generated from groups of non-polarized cells by a combination of processes that induce the acquisition of cell polarity, lumen formation, and the subsequent steps required for tubulogenesis. The subcellular mechanisms associated to these processes are still poorly understood. The extracellular environment provides a cue for the initial polarization, while cytoskeletal rearrangements build up the three-dimensional architecture that supports the central lumen. The proper orientation of cell division in the epithelium has been found to be required for the normal formation of the central lumen in epithelial morphogenesis. Moreover, recent data in cellular models and in vivo have shed light into the underlying mechanisms that connect the spindle orientation machinery with cell polarity. In addition, recent work has clarified the core molecular components of the vesicle trafficking machinery in epithelial morphogenesis, including Rab-GTPases and the Exocyst, as well as an increasing list of microtubule-binding and actin-binding proteins and motors, most of which are conserved from yeast to humans. In this review we will focus on the discussion of novel findings that have unveiled important clues for the mechanisms that regulate epithelial tubulogenesis.     

U1 small nuclear RNA variants differentially form ribonucleoprotein particles in vitro

The U1 small nuclear (sn)RNA participates in splicing of pre-mRNAs by recognizing and binding to 5′ splice sites at exon/intron boundaries. U1 snRNAs associate with 5′ splice sites in the form of ribonucleoprotein particles (snRNPs) that are comprised of the U1 snRNA and 10 core components, including U1A, U1-70K, U1C and the ‘Smith antigen’, or Sm, heptamer. The U1 snRNA is highly conserved across a wide range of taxa; however, a number of reports have identified the presence of expressed U1-like snRNAs in multiple species, including humans. While numerous U1-like molecules have been shown to be expressed, it is unclear whether these variant snRNAs have the capacity to form snRNPs and participate in splicing. The purpose of the present study was to further characterize biochemically the ability of previously identified human U1-like variants to form snRNPs and bind to U1 snRNP proteins. A bioinformatics analysis provided support for the existence of multiple expressed variants. In vitro gel shift assays, competition assays, and immunoprecipitations (IPs) revealed that the variants formed high molecular weight assemblies to varying degrees and associated with core U1 snRNP proteins to a lesser extent than the canonical U1 snRNA. Together, these data suggest that the human U1 snRNA variants analyzed here are unable to efficiently bind U1 snRNP proteins. The current work provides additional biochemical insights into the ability of the variants to assemble into snRNPs.     

mTOR: from growth signal integration to cancer, diabetes and ageing

In all eukaryotes, the target of rapamycin (TOR) signalling pathway couples energy and nutrient abundance to the execution of cell growth and division, owing to the ability of TOR protein kinase to simultaneously sense energy, nutrients and stress and, in metazoans, growth factors. Mammalian TOR complex 1 (mTORC1) and mTORC2 exert their actions by regulating other important kinases, such as S6 kinase (S6K) and Akt. In the past few years, a significant advance in our understanding of the regulation and functions of mTOR has revealed the crucial involvement of this signalling pathway in the onset and progression of diabetes, cancer and ageing.