3D-QSAR studies of checkpoint kinase 1 inhibitors based on molecular docking and CoMFA

Three-dimensional quantitative structure–activity relationship (3D-QSAR) studies were performed on a series of substituted 1,4-dihydroindeno[1,2-c]pyrazoles inhibitors, using molecular docking and comparative molecular field analysis (CoMFA). The docking results from GOLD 3.0.1 provide a reliable conformational alignment scheme for the 3D-QSAR model. Based on the docking conformations and alignments, highly predictive CoMFA model was built with cross-validated q ² value of 0.534 and non-cross-validated partial least-squares analysis with the optimum components of six showed a conventional r ² value of 0.911. The predictive ability of this model was validated by the testing set with a conventional r ² value of 0.812. Based on the docking and CoMFA, we have identified some key features of the 1,4-dihydroindeno[1,2-c]pyrazoles derivatives that are responsible for checkpoint kinase 1 inhibitory activity. The analyses may be used to design more potent 1,4-dihydroindeno[1,2-c]pyrazoles derivatives and predict their activity prior to synthesis.     

Nitric Oxide Mediates Root K+/Na+ Balance in a Mangrove Plant,Kandelia obovata,by Enhancing the Expression of AKT1-Type K+ Channel and Na+/H+ Antiporter under High Salinity

It is well known that nitric oxide (NO) enhances salt tolerance of glycophytes. However, the effect of NO on modulating ionic balance in halophytes is not very clear. This study focuses on the role of NO in mediating K⁺/Na⁺ balance in a mangrove species, Kandelia obovata Sheue, Liu and Yong. We first analyzed the effects of sodium nitroprusside (SNP), an NO donor, on ion content and ion flux in the roots of K. obovata under high salinity. The results showed that 100 μM SNP significantly increased K⁺ content and Na⁺ efflux, but decreased Na⁺ content and K⁺ efflux. These effects of NO were reversed by specific NO synthesis inhibitor and scavenger, which confirmed the role of NO in retaining K⁺ and reducing Na⁺ in K. obovata roots. Using western-blot analysis, we found that NO increased the protein expression of plasma membrane (PM) H⁺-ATPase and vacuolar Na⁺/H⁺ antiporter, which were crucial proteins for ionic balance. To further clarify the molecular mechanism of NO-modulated K⁺/Na⁺ balance, partial cDNA fragments of inward-rectifying K⁺ channel, PM Na⁺/H⁺ antiporter, PM H⁺-ATPase, vacuolar Na⁺/H⁺ antiporter and vacuolar H⁺-ATPase subunit c were isolated. Results of quantitative real-time PCR showed that NO increased the relative expression levels of these genes, while this increase was blocked by NO synthesis inhibitors and scavenger. Above results indicate that NO greatly contribute to K⁺/Na⁺ balance in high salinity-treated K. obovata roots, by activating AKT1-type K⁺ channel and Na⁺/H⁺ antiporter, which are the critical components in K⁺/Na⁺ transport system.     

Stress-induced RNASET2 overexpression mediates melanocyte apoptosis via the TRAF2 pathway in vitro

The recent genome-wide association study identified a link between vitiligo and genetic variants in the ribonuclease T2 (RNASET2) gene; however, the functional roles of RNASET2 in vitiligo pathogenesis or in melanocyte apoptosis have yet to be determined. The current study was designed to investigate the vitiligo-related expression pattern of RNASET2 and its molecular function involving apoptosis-related signaling proteins and pathways. The results showed overexpression of RNASET2 in epidermis specimens from 40 vitiligo patients compared with that from matched healthy controls. In addition, in vitro analyses indicated that overexpression of RNASET2 was inducible in cultured primary human melanocytes and keratinocytes by stress conditions, that is, exposure to UV irradiation, hydrogen peroxide, and inflammatory factors, respectively, and led to increased cell apoptosis via the tumor necrosis factor receptor-associated factor 2 (TRAF2)–caspases pathway through the physical interaction of RNASET2 with TRAF2. Thus, RNASET2 may contribute to vitiligo pathogenesis by inhibiting TRAF2 expression and, as such, RNASET2 may represent a potential therapeutic target of vitiligo.     

聚苹果酸生产菌出芽短梗霉CCTCC M2012223的全基因组测序及序列分析

【目的】解析出芽短梗霉CCTCC M2012223的基因组序列信息,分析其代谢产物聚苹果酸、黑色素、普鲁兰多糖合成相关基因,为深入研究遗传多样性和代谢工程改造提供序列背景信息。【方法】使用Illumina Hi Seq高通量测序平台对出芽短梗霉CCTCC M2012223菌株进行全基因组测序,并对测序数据进行序列拼接,基因预测与功能注释,COG/GO聚类分析,比较基因组学分析等。下载其他5株出芽短梗霉基因组序列,比较分析6株菌的种内同源基因、全基因组进化以及代谢产物合成相关基因。【结果】出芽短梗霉CCTCC M2012223基因组序列全长30756831 bp,GC含量47.49%,编码9452个基因。比较基因组分析表明出芽短梗霉CCTCC M2012223的基因组组装长度最长,6株菌的同源基因数达到7092个,普鲁兰多糖和聚苹果酸合成相关基因的蛋白序列有很高的保守性。出芽短梗霉CCTCC M2012223和Aureobasidium pullulans var.melanogenum亲缘关系最近,而这2株菌的黑色素合成相关基因的蛋白序列有一些插入和突变。【结论】本研究解析了出芽短梗霉CCTCC M2012223的基因组序列信息,获得黑色素、普鲁兰多糖和聚苹果酸合成相关基因,为后续的代谢机制解析和改造提供相关依据。     

水稻叶片在自然衰老过程中1，5-二磷酸核酮糖羧化酶/加氧酶的降解(英文)

１,５二磷酸核酮糖羧化酶／加氧酶（Ｒｕｂｉｓｃｏ）是光合碳同化的关键酶,研究其降解机理对合理调控水稻生长后期光合衰退具有重要意义。前人用人为诱导植物衰老的方法,研究了Ｒｕｂｉｓｃｏ的降解机理,认为该酶降解之前,必需发生亚基间的交联聚合和向类囊体膜转移,这样在结构和空间上有利于水解酶的作用。我们用自然衰老叶片进行研究的结果表明：Ｒｕｂｉｓｃｏ在降解过程中其比活基本保持恒定,意味着未发生酶的失活,也就是说酶结构未发生根本性改变,由此也可初步判断酶未发生亚基间的交联聚合（已证明亚基交联可导致酶失活）。接着用ＳＤＳＰＡＧＥ和蛋白印迹技术证实了上述观点：Ｒｕｂｉｓｃｏ降解之前只有极少量的大亚基聚合体,随后同未聚合大亚基一起很快降解。此外,研究结果进一步表明酶分子在降解之前有少量与叶绿体膜结合,但降解过程中并未见膜结合蛋白增加。根据上述结果我们认为,亚基间交联聚合和向膜转移并非水稻叶片自然衰老时Ｒｕｂｉｓｃｏ降解的必要条件。     

不同林地清理方式对杉木林土壤肥力的影响

研究了杉木林采伐迹地及采伐后的炼山迹地的土壤物理性质、养分含量、微生物数量和酶活性.结果表明,采伐迹地的非毛管孔隙比杉木林地增加23%,自然含水量和毛管持水量则下降2%;炼山迹地土壤容重比杉木林地增加10%,非毛管孔隙、自然含水量和毛管持水量分别下降61%、48%和26%.采伐迹地有机质、全N、全P和全K含量分别比杉木林地下降14%、14%、3%和22%,炼山迹地分别下降37%、37%、47%和7%.采伐迹地碱解N和有效K含量分别比杉木林地增加24%和31%,有效P含量比杉木林地下降1%;炼山迹地的碱解N、有效P和有效K含量分别比杉木林地下降2%、43%和40%.采伐迹地的细菌、真菌和放线菌数量比杉木林地增加1.4、11.3和0.8倍;炼山迹地细菌数量比杉木林地减少24%,真菌和放线菌数量增加了.0和0.倍.采伐迹地脲酶、过氧化氢酶和纤维素分解酶活性分别为杉木林地1.9、1.6和2.1倍,而炼山迹地分别为后者的3.4%、90%和106%.湿润土壤有机质、全N和全P含量高,疏松多孔的土壤有利于碱解N、速效P、速效K积累和脲酶活性的增加.真菌数量随毛管孔隙的增加而减少.通气良好有利于提高土壤过氧化氢酶活性.     

溴氨酸降解菌株的分离和特性

从化工厂污泥中中分离到4个对蒽醌染料中间体溴氨酸有显降解和脱色作用的菌株。经鉴定,4株菌均为假单胞菌属（Pseudomonas sp.）。脱色效果最好的N1菌株能以溴酸为唯一碳源生长,其脱色效果受温度和pH影响较大,最佳生长条件是30℃,pH7.2。     

不同管理模式对茶树碳氮磷含量及其生态化学计量比的影响

植物不同器官的碳(C)、氮(N)、磷(P)含量及其生态化学计量特征能够反映植物内部的养分分配与平衡关系。该研究以福建安溪3种不同管理模式的铁观音茶园为研究对象, 设置了常规管理模式下的茶园(M1)、间作套种模式下的茶园(M2)和现代技术管理模式下的茶园(M3) 3种样地, 分析茶树根、茎、叶器官的C、N、P含量及其化学计量学特征, 养分的变异特征与异速生长关系。结果表明: M2和M3管理模式下茶树根、茎、叶N、P含量均显著高于M1管理模式, C含量差异不明显; 茶树根、茎、叶C:N、C:P、N:P均表现为M1 > M2 > M3。茶树不同器官C、N、P含量差异较大, 根据变异来源分析, 管理模式因素对C、N、P含量变异的影响均达到显著水平。根茎叶N-P的异速生长关系表明茶树不同器官的养分需求存在相似性; 土壤pH和容重是影响C:N、C:P、N:P的重要因素, 而土壤含水量和盐度对茶树根和叶C含量的影响较大。总体来讲, 间作套种以及现代化滴灌、水肥等管理模式可以改善茶树对养分的吸收效率, 对解决土壤养分不均衡问题具有正面效应。     

茶园间作柑桔杨梅或吊瓜对叶蝉及蜘蛛类群数量和空间格局的影响

为评价茶园间作几种常见经济作物对重要害虫假眼小绿叶蝉及其主要天敌蜘蛛类群数量和空间格局的影响,遂选乌牛早品种纯茶园、乌牛早分别与柑桔、杨梅和吊瓜的间作茶园、以及安吉白茶与吊瓜间作茶园,2007年9月上旬—2008年12月下旬,每旬1次调查茶丛上、中、下层叶蝉和各种蜘蛛的数量。结果表明:(1)与纯茶园相比,间作茶园叶蝉种群数量和蜘蛛类群个体数量显著地增加,间作茶园蜘蛛种数显著地增加;(2)间作茶园茶丛上、中、下层叶蝉、蜘蛛个体数量分布明显区别于纯茶园茶丛上、中、下层叶蝉、蜘蛛个体数量分布;(3)茶丛上层的嫩梢是制作高档茶的原料,而纯茶园茶丛上层叶蝉虫口百分率为54.16%,间作茶园茶丛上层叶蝉虫口百分率皆减小,并且叶蝉高峰期间蜘蛛的跟随效应增强;(4)间作增加了经济收入并减少了防治次数。认为:(1)间作可在一定程度上调控叶蝉种群、蜘蛛类群的数量和空间格局;(2)间作可减轻叶蝉为害造成的产值损失,增强了茶园群落对于叶蝉的自然控制潜能。     

人妊娠子宫平滑肌细胞的原代培养Transgelin蛋白的检测

为了建立最佳的人妊娠子宫平滑肌细胞的原代培养方法和初步检测子宫平滑肌细胞中Transgelin蛋白的表达,采用组织块贴壁法和酶消化法进行人妊娠子宫平滑肌原代培养.发现组织贴块培养的细胞呈典型的梭状肌细胞样生长,经过传代纯化,通过免疫细胞化学方法检测平滑肌肌动蛋白(smooth muscle acting,SMA)进行细胞鉴定及检测Trangsgelin(smooth muscle 22 alpha,SM22-α)蛋白,得到SMA、snd2-α荧光免疫细胞化学染色为阳性.结果表明组织贴块法对妊娠子宫平滑肌细胞损伤小,可获得状态良好的纯净的子宫平滑肌细胞,子宫平滑肌细胞中大量表达sm2-α,为进一步研究sm22-α在子宫平滑肌细胞中作用打下基础.