The hidden flora of a lake

Summary Twenty-seven water samples taken from the Sea of Galilee, Israel, were enriched selectively with an inorganic salt medium to further the appearance of halophilic algae, rare or unknown from the lake. The Chrysophycean flagellatePrymnesium parvum, known to cause toxic blooms, has been especially looked for.A radical change in the algal composition of the enriched samples could be observed. Out of 31 species that proliferated in the so established cultures, 11 were new to the lake. Fifteen species belonged to the Cyanophyceae, 8 to the Diatomeae, and 7 species belonged to the Chlorophyceae. Prymnesium parvum could be found in 6 out of the 27 samples.It is concluded that in case of a sufficient rise in the lake's salinity, halophilic algae that are now rare or dormant in the lake, will replace the present algal flora. The presence in the lake ofPrymnesium parvum forms a potential danger of toxic blooms.

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Résumé Vingt-sept échantillons d'eau prélevés dans le Lac de Tibériade, Israel, ont été enrichis sélectivement par des milieux salins inorganiques afin de stimuler le développement d'algues halophiles rares ou inconnues dans le lac. Notre attention a été particulièrement attirée par la présence du Chrysophyte flagélléPrymnesium parvum, qui provoque des pullulations toxiques dans L'eau.Nous avons pu observer un changement radical dans la composition floristique des échantillons enrichis. Parmi les 31 espèces qui se sont développées dans nos cultures, 11 espèces sont inconnues dans le lac; 15 espèces appartiennent aux Cyanophyceae, 8 aux Diatomées et 7 aux Chlorophyceae. Nous avons trouvéPrymnesium parvum dans 6 échantillons sur 27.Nous pouvons conclure, qu'en cas d'accroissement du taux de la salinité dans le lac, les algues halophiles, actuellement rares ou dormantes, remplaceront la flore présente.Les possibles pullulations toxiques dePrymnesium parvum dans les eaux du Lac constituent donc un danger permanent.

     

Fusobacterium nucleatum adhesin FadA binds vascular endothelial cadherin and alters endothelial integrity

Fusobacterium nucleatum is a Gram-negative oral anaerobe, capable of systemic dissemination causing infections and abscesses, often in mixed-species, at different body sites. We have shown previously that F. nucleatum adheres to and invades host epithelial and endothelial cells via a novel FadA adhesin. In this study, vascular endothelial (VE)-cadherin, a member of the cadherin family and a cell-cell junction molecule, was identified as the endothelial receptor for FadA, required for F. nucleatum binding to the cells. FadA colocalized with VE-cadherin on endothelial cells, causing relocation of VE-cadherin away from the cell-cell junctions. As a result, the endothelial permeability was increased, allowing the bacteria to cross the endothelium through loosened junctions. This crossing mechanism may explain why the organism is able to disseminate systemically to colonize in different body sites and even overcome the placental and blood-brain barriers. Co-incubation of F. nucleatum and Escherichia coli enhanced penetration of the endothelial cells by the latter in the transwell assays, suggesting F. nucleatum may serve as an 'enabler' for other microorganisms to spread systemically. This may explain why F. nucleatum is often found in mixed infections. This study reveals a possible novel dissemination mechanism utilized by pathogens.     

Intercoupling surface plasmon resonance and diffusion reflection measurements for real‐time cancer detection

Spatial diffusion reflection (DR) measurements of gold nanorods (GNR) were recently suggested as a simple and highly sensitive non‐invasive and non‐ionizing method for real‐time cancer detection. In this paper we demonstrate that wavelength dependent DR measurements enable the spectral red‐shift observation of highly concentrated GNR. By conjugating targeting moieties to the GNR, large density of GNR can specifically home onto cancer cells. The inter‐particle plasmon resonance pattern of the highly concentrated GNR leads to an extension and a red‐shift (Δλ) in the absorption spectrum of the concentrated GNR. Dark‐field microscopy was used in order to measure the expected Δλ in different GNR concentrations in vitro. Double‐wavelength DR measurements of tissue‐like phantoms and tumor bearing mice containing different GNR concentrations are presented. We show that the DR profile of the highly concentrated GNR directly correlate with the spectral extension and red‐shift. This presented work suggests that wavelength dependent DR method can serve as a promising tool for real‐time superficial tumor detection. (© 2013 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Cooperative interplay of let-7 mimic and HuR with MYC RNA

Both RNA-binding proteins (RBP) and miRNA play important roles in the regulation of mRNA expression, often acting together to regulate a target mRNA. In some cases the RBP and miRNA have been reported to act competitively, but in other instances they function cooperatively. Here, we investigated HuR function as an enhancer of let-7-mediated translational repression of c-Myc despite the separation of their binding sites. Using an in vitro system, we determined that a let-7 mimic, consisting of single-stranded (ss)DNA complementary to the let-7 binding site, enhanced the affinity of HuR for a 122-nt MYC RNA encompassing both binding sites. This finding supports the biophysical principle of cooperative binding by an RBP and miRNA purely through interactions at distal mRNA binding sites.     

Identification of Small Exonic CNV from Whole-Exome Sequence Data and Application to Autism Spectrum Disorder

Copy number variation (CNV) is an important determinant of human diversity and plays important roles in susceptibility to disease. Most studies of CNV carried out to date have made use of chromosome microarray and have had a lower size limit for detection of about 30 kilobases (kb). With the emergence of whole-exome sequencing studies, we asked whether such data could be used to reliably call rare exonic CNV in the size range of 1–30 kilobases (kb), making use of the eXome Hidden Markov Model (XHMM) program. By using both transmission information and validation by molecular methods, we confirmed that small CNV encompassing as few as three exons can be reliably called from whole-exome data. We applied this approach to an autism case-control sample (n = 811, mean per-target read depth = 161) and observed a significant increase in the burden of rare (MAF ≤1%) 1–30 kb CNV, 1–30 kb deletions, and 1–10 kb deletions in ASD. CNV in the 1–30 kb range frequently hit just a single gene, and we were therefore able to carry out enrichment and pathway analyses, where we observed enrichment for disruption of genes in cytoskeletal and autophagy pathways in ASD. In summary, our results showed that XHMM provided an effective means to assess small exonic CNV from whole-exome data, indicated that rare 1–30 kb exonic deletions could contribute to risk in up to 7% of individuals with ASD, and implicated a candidate pathway in developmental delay syndromes.