A molecular and evolutionary study of the beta-globin gene family of the Australian marsupial Sminthopsis crassicaudata

Beta-globin gene families in eutherians (placental mammals) consist of a set of four or more developmentally regulated genes which are closely linked and, in general, arranged in the order 5'-embryonic/fetal genes- adult genes-3'. This cluster of genes is proposed to have arisen by tandem duplication of ancestral beta-globin genes, with the first duplication occurring 200 to 155 MYBP just prior to a period in mammalian evolution when eutherians and marsupials diverged from a common ancestor. In this paper we trace the evolutionary history of the beta-globin gene family back to the origins of these mammals by molecular characterization of the beta-globin gene family of the Australian marsupial Sminthopsis crassicaudata. Using Southern and restriction analysis of total genomic DNA and bacteriophage clones of beta-like globin genes, we provide evidence that just two functional beta-like globin genes exist in this marsupial, including one embryonic- expressed gene (S.c-epsilon) and one adult-expressed gene (S.c-beta), linked in the order 5'-epsilon-beta-3'. The entire DNA sequence of the adult beta-globin gene is reported and shown to be orthologous to the adult beta-globin genes of the North American marsupial Didelphis virginiana and eutherian mammals. These results, together with results from a phylogenetic analysis of mammalian beta-like globin genes, confirm the hypothesis that a two-gene cluster, containing an embryonic- and an adult-expressed beta-like globin gene, existed in the most recent common ancester of marsupials and eutherians. Northern analysis of total RNA isolated from embryos and neonatals indicates that a switch from embryonic to adult gene expression occurs at the time of birth, coinciding with the transfer of the marsupial from a uterus to a pouch environment.      

Climatic and biotic controls on annual carbon storage in Amazonian ecosystems

• 1 The role of undisturbed tropical land ecosystems in the global carbon budget is not well understood. It has been suggested that interannual climate variability can affect the capacity of these ecosystems to store carbon in the short term. In this paper, we use a transient version of the Terrestrial Ecosystem Model (TEM) to estimate annual carbon storage in undisturbed Amazonian ecosystems during the period 1980–94, and to understand the underlying causes of the year‐to‐year variations in net carbon storage for this region.
  • 2 We estimate that the total carbon storage in the undisturbed ecosystems of the Amazon Basin in 1980 was 127.6 Pg C, with about 94.3 Pg C in vegetation and 33.3 Pg C in the reactive pool of soil organic carbon. About 83% of the total carbon storage occurred in tropical evergreen forests. Based on our model’s results, we estimate that, over the past 15 years, the total carbon storage has increased by 3.1 Pg C (+ 2%), with a 1.9‐Pg C (+2%) increase in vegetation carbon and a 1.2‐Pg C (+4%) increase in reactive soil organic carbon. The modelled results indicate that the largest relative changes in net carbon storage have occurred in tropical deciduous forests, but that the largest absolute changes in net carbon storage have occurred in the moist and wet forests of the Basin.
    • 3 Our results show that the strength of interannual variations in net carbon storage of undisturbed ecosystems in the Amazon Basin varies from a carbon source of 0.2 Pg C/year to a carbon sink of 0.7 Pg C/year. Precipitation, especially the amount received during the drier months, appears to be a major controller of annual net carbon storage in the Amazon Basin. Our analysis indicates further that changes in precipitation combine with changes in temperature to affect net carbon storage through influencing soil moisture and nutrient availability.
      • 4 On average, our results suggest that the undisturbed Amazonian ecosystems accumulated 0.2 Pg C/year as a result of climate variability and increasing atmospheric CO₂ over the study period. This amount is large enough to have compensated for most of the carbon losses associated with tropical deforestation in the Amazon during the same period.
        • 5 Comparisons with empirical data indicate that climate variability and CO₂ fertilization explain most of the variation in net carbon storage for the undisturbed ecosystems. Our analyses suggest that assessment of the regional carbon budget in the tropics should be made over at least one cycle of El Niño–Southern Oscillation because of interannual climate variability. Our analyses also suggest that proper scaling of the site‐specific and subannual measurements of carbon fluxes to produce Basin‐wide flux estimates must take into account seasonal and spatial variations in net carbon storage.

     

Thermal adaptation of soil microbial respiration to elevated temperature

In the short‐term heterotrophic soil respiration is strongly and positively related to temperature. In the long‐term, its response to temperature is uncertain. One reason for this is because in field experiments increases in respiration due to warming are relatively short‐lived. The explanations proposed for this ephemeral response include depletion of fast‐cycling, soil carbon pools and thermal adaptation of microbial respiration. Using a > 15 year soil warming experiment in a mid‐latitude forest, we show that the apparent ‘acclimation’ of soil respiration at the ecosystem scale results from combined effects of reductions in soil carbon pools and microbial biomass, and thermal adaptation of microbial respiration. Mass‐specific respiration rates were lower when seasonal temperatures were higher, suggesting that rate reductions under experimental warming likely occurred through temperature‐induced changes in the microbial community. Our results imply that stimulatory effects of global temperature rise on soil respiration rates may be lower than currently predicted.     

Alleviation of water and osmotic stress-induced changes in nitrogen metabolizing enzymes in <Emphasis Type="Italic">Triticum aestivum</Emphasis> L. cultivars by potassium

Present communication reports laboratory and pot experiments conducted to study the influence of water and osmotic stress on nitrogen uptake and metabolism in two wheat (Triticum aestivum L) cultivars with and without potassium supplementation. Polyethylene glycol 6000-induced osmotic stress/restricted irrigation caused a considerable decline in the activity of nitrate reductase, glutamate synthase, alanine and aspartate aminotransferases, and glutamate dehydrogenase. Potassium considerably improved nitrogen metabolism under normal water supply conditions and also resulted in amelioration of the negative impact of water and osmotic stresses indicating that potassium supplementation can be used as a potential tool for enhancing the nitrogen use efficiency in wheat for exploiting its genetic potential.     

Collective Behaviour without Collective Order in Wild Swarms of Midges

Collective behaviour is a widespread phenomenon in biology, cutting through a huge span of scales, from cell colonies up to bird flocks and fish schools. The most prominent trait of collective behaviour is the emergence of global order: individuals synchronize their states, giving the stunning impression that the group behaves as one. In many biological systems, though, it is unclear whether global order is present. A paradigmatic case is that of insect swarms, whose erratic movements seem to suggest that group formation is a mere epiphenomenon of the independent interaction of each individual with an external landmark. In these cases, whether or not the group behaves truly collectively is debated. Here, we experimentally study swarms of midges in the field and measure how much the change of direction of one midge affects that of other individuals. We discover that, despite the lack of collective order, swarms display very strong correlations, totally incompatible with models of non-interacting particles. We find that correlation increases sharply with the swarm''s density, indicating that the interaction between midges is based on a metric perception mechanism. By means of numerical simulations we demonstrate that such growing correlation is typical of a system close to an ordering transition. Our findings suggest that correlation, rather than order, is the true hallmark of collective behaviour in biological systems.     

Soil Solution Nitrogen Losses During Clearing of Lowland Amazon Forest for Pasture

Losses of nitrogen (N) often follow severe disturbance of forest ecosystems. In tropical forests, losses of N associated with the disturbance of clearing may be particularly important because rates of soil N cycling are high and forest clearing now occurs on a large scale. We measured soil solution inorganic N concentrations and fluxes for 1 year in an intact forest in the Brazilian Amazon state of Rondônia and in an adjacent 3-ha forest plot that was cleared for pasture by cutting, burning and planting pasture grass and in established cattle pastures on the same soils that were 5 and 22 years old. The cleared forest had higher soil solution NO ₃ ^? concentrations than the intact forest, but the difference between the cleared and control forests declined with time after the start of the first post-clearing rainy season. Established pastures had much lower solution NH ₄ ⁺ and NO ₃ ^? concentrations than forest or cleared forest. Estimated annual dissolved inorganic solution N fluxes to below 1 m during the first year after clearing were 2.5 kg ha^?1 in forest and 24.4 kg ha^?1 in newly cleared forest compared with only 0.5–1.2 kg ha^?1 in established pastures. The solution fluxes from cleared forest during the first year after clearing were approximately 7 times greater than gaseous N oxide (N₂O+NO) losses estimated for the same time. These results were consistent with the characterization of moist tropical forests on weathered soils as N-rich and likely to respond to disturbances that elevate soil N availability with increased loss to both soil solution and the atmosphere. These results also suggest that the relative increase in N oxide loss is substantially less than the increase solution inorganic N loss.     

New recombinant Escherichia coli strain tailored for the production of poly(3-hydroxybutyrate) from agroindustrial by-products

A recombinant E. coli strain (K24K) was constructed and evaluated for poly(3-hydroxybutyrate) (PHB) production from whey and corn steep liquor as main carbon and nitrogen sources. This strain bears the pha biosynthetic genes from Azotobacter sp. strain FA8 expressed from a T5 promoter under the control of the lactose operator. K24K does not produce the lactose repressor, ensuring constitutive expression of genes involved in lactose transport and utilization. PHB was efficiently produced by the recombinant strain grown aerobically in fed-batch cultures in a laboratory scale bioreactor on a semisynthetic medium supplemented with the agroindustrial by-products. After 24 h, cells accumulated PHB to 72.9% of their cell dry weight, reaching a volumetric productivity of 2.13 g PHB per liter per hour. Physical analysis of PHB recovered from the recombinants showed that its molecular weight was similar to that of PHB produced by Azotobacter sp. strain FA8 and higher than that of the polymer from Cupriavidus necator and that its glass transition temperature was approximately 20 degrees C higher than those of PHBs from the natural producer strains.     

Entomopathogenic Nematodes Are Not an Alternative to Fenamiphos for Management of Plant-Parasitic Nematodes on Golf Courses in Florida

With the cancellation of fenamiphos in the near future, alternative nematode management tactics for plant-parasitic nematodes (PPN) on golf courses need to be identified. The use of entomopathogenic nematodes (EPN) has been suggested as one possible alternative. This paper presents the results of 10 experiments evaluating the efficacy of EPN at managing PPN on turfgrasses and improving turf performance. These experiments were conducted at various locations throughout Florida over the course of a decade. In different experiments, different EPN species were tested against different species of PPN. Separate experiments evaluated multiple rates and applications of EPN, compared different EPN species, and compared single EPN species against multiple species of PPN. In a few trials, EPN were associated with reductions in certain plant-parasite species, but in other trials were associated with increases. In most trials, EPN had no effect on plant parasites. Because EPN were so inconsistent in their results, we conclude that EPN are not acceptable alternatives to fenamiphos by most turf managers in Florida at this time.