Microarray-based characterization of microbial community functional structure and heterogeneity in marine sediments from the Gulf of Mexico

Marine sediments of coastal margins are important sites of carbon sequestration and nitrogen cycling. To determine the metabolic potential and structure of marine sediment microbial communities, two cores were collected each from the two stations (GMT at a depth of 200 m and GMS at 800 m) in the Gulf of Mexico, and six subsamples representing different depths were analyzed from each of these two cores using functional gene arrays containing approximately 2,000 probes targeting genes involved in carbon fixation; organic carbon degradation; contaminant degradation; metal resistance; and nitrogen, sulfur, and phosphorous cycling. The geochemistry was highly variable for the sediments based on both site and depth. A total of 930 (47.1%) probes belonging to various functional gene categories showed significant hybridization with at least 1 of the 12 samples. The overall functional gene diversity of the samples from shallow depths was in general lower than those from deep depths at both stations. Also high microbial heterogeneity existed in these marine sediments. In general, the microbial community structure was more similar when the samples were spatially closer. The number of unique genes at GMT increased with depth, from 1.7% at 0.75 cm to 18.9% at 25 cm. The same trend occurred at GMS, from 1.2% at 0.25 cm to 15.2% at 16 cm. In addition, a broad diversity of geochemically important metabolic functional genes related to carbon degradation, nitrification, denitrification, nitrogen fixation, sulfur reduction, phosphorus utilization, contaminant degradation, and metal resistance were observed, implying that marine sediments could play important roles in biogeochemical cycling of carbon, nitrogen, phosphorus, sulfate, and various metals. Finally, the Mantel test revealed significant positive correlations between various specific functional genes and functional processes, and canonical correspondence analysis suggested that sediment depth, PO(4)(3-), NH(4)(+), Mn(II), porosity, and Si(OH)(4) might play major roles in shaping the microbial community structure in the marine sediments.     

植物组织特异性启动子研究

组织特异性启动子可以调控基因在某些特定的器官或组织部位中表达。通过对植物组织特异性启动子进行分类和比较,概述了植物组织特异性启动子的结构特点、功能及研究进展。     

冻结速率对血小板冷冻干燥保存的影响

冷冻干燥法是使血小板能够长期保存的一种理想方法。冻结过程对血小板的冻干保存至关重要。采用梯度降温、搁板预冷、液氮冻结等三种冻结方式,研究了冻结速率对血小板冷冻干燥保存恢复率的影响。实验结果表明用搁板预冷的方式冻结并干燥的血小板复水后的恢复率最高,达到(93.0.2)%,此时的冻结速度约为10℃/min。扫描电镜照片显示冻干复水后的血小板保持了完整的细胞结构,但与新鲜血小板相比略呈球形。冻干复水后的血小板对1U/ml凝血酶的最大聚集率接近于新鲜血小板,但聚集速度比新鲜血小板慢。     

脂肪酶产生菌的筛选及鉴定研究

为寻找合适的产脂肪酶野生菌,以期能高效的催化合成生物柴油。通过添加橄榄油作为惟一碳源进行富集培养,然后以透明圈平板筛选法从油污土壤样品中成功地筛选到了一株酶活力值为10.12U/ml产脂肪酶菌株。通过对该菌株表型、生理生化特征分析及16S rRNA部分序列的系统进化发育分析鉴定该菌为芽胞杆菌属,定名为BacilluspumilusB2。     

石油化学工人的细胞遗传学研究——Ⅰ.染色体畸变的检测

对石油化工企业工人(180人)及非石化企业对照人群(180人)进行染色体畸变的检测,结果表明:(1)石化地区居民染色体畸变频率略高于非石化地区居民,但无显著性差异。(2)石化企业中,炼油厂污水处理车间和塑料厂污水处理车间工人的染色体畸变各项指标和对照组比较(除塑料厂污水处理车间工人的染色体畸变一项指标外)或与其它4个车间(苯酚丙酮、催化裂化、乙二醇和丁二烯)比较,都有显著或极显著的升高。4个车间分别和对照组比较,没有显著升高。(3)染色体畸变频率有季节变化,春秋季明显高于冬季和夏季。(4)对照个体中,不同性别、不同年龄组及吸烟与否,对染色体畸变的各项指标均无显著性差异。但在石化企业不同年龄工人染色体畸变率的比较中,大于或等于40岁的工人组,明显高于30岁以下各组。     

曲酸生产菌的诱变选育

Aspergillusoryzae2336经两次紫外诱变后筛选出突变菌株UV21012-1。该菌株曲酸产量比出发菌株提高了1．68倍;遗传性状稳定,传代5次曲酸产量基本不下降,而且发酵周期也比出发菌株明显缩短。     

豌豆外源凝集素基因的克隆及序列分析

从豌豆幼叶分离基因组ＤＮＡ,设计特异引物,用聚合酶链式反应方法扩增出豌豆外源凝集素基因并克隆到Ｅ．ｃｏｌｉ质粒ｐＢｌｕｅｓｃｒｉｐｔＳＫ（＋）的ＥｃｏＲＶ位点。进一步亚克隆至ｐＵＣ１９。序列分析表明,克隆到的片段大小为８３２ｂｐ,包含了豌豆外源凝集素基因完整的编码序列。该基因无内含子,同报道的已知序列相比,其核苷酸序列及推测的氨基酸序列的同源率分别为９９．６％和９８．９％。     

植物他感作用及其在农业中应用的研究进展

全面而深刻地研究植物生化他感作用,不但有助于正确认识群落的结构,功能,演替和分类,而且对于营林造林,灌丛利用,杂草防除,园林植物,选配和生态环境的保护都具有十分重要的意义,本文概述了植物生化作用在国内外的研究进展,及其今后的研究发展方向。     

Chemical ligation and cleavage on solid support facilitate recombinant peptide purification

Recombinant peptide technology offers a promising means alternative to chemical synthesis and natural extraction of peptides. The bottleneck in the process of recombinant peptide production is the paucity of efficient purification protocols to eliminate heterogeneity of the desired preparation. Here, we introduce a combination strategy to facilitate purification of recombinant therapeutic peptide via native chemical ligation and chemical cleavage on a solid support. In this study, one promising therapeutic peptide called for type-2 diabetes, GLP-1(7-37), was prepared with high yield and purity without an expensive HPLC purification. Furthermore, this method is also useful for the preparation of isotopically labeled NMR peptide samples. Hopefully, this strategy combining chemical ligation with chemical cleavage on a solid support will ameliorate the production of important recombinant pharmaceutical peptides.     

长期施肥对黑土大豆根瘤菌群体结构和多样性的影响

为揭示长期施肥对黑土大豆根瘤菌群体结构和多样性的影响,采用BOX-PCR、IGS-PCR-RFLP和16S r DNA基因序列分析法,对分离自黑龙江省7种长期不同施肥处理的254株大豆根瘤菌进行了遗传多样性和系统发育分析,结合土壤理化性质分析了大豆根瘤菌群体结构和多样性与土壤因子间的关系。7种处理分别为不施肥(CK)、有机肥(OM)、单施氮肥(N1)、单施2倍氮肥(N2)、氮肥+有机肥(N1+OM)、氮肥磷肥混施(N1P1)和2倍氮肥磷肥混施(N2P2)。系统发育分析结果表明,所有供试菌株均为慢生根瘤菌属(Bradyrhizobium),其中大部分菌株与日本慢生大豆根瘤菌(Bradyrhizobium japonicum)相似性最高,少部分菌株与辽宁慢生大豆根瘤菌(Bradyrhizobium liaoningense)相似性最高。BOX-PCR聚类分析结果表明,供试菌株在70%相似性水平上分为15个群,在与施肥处理相关性分析中分为3个群体,分别对应于不施化肥处理(CK和OM)、化学氮肥处理(N1、N2、N1+OM)、氮肥磷肥处理(N1P1和N2P2)。典范对应分析结果表明,土壤p H、速效氮和速效磷与根瘤菌群体结构相关性极显著(P=0.002,0.004,0.002)。不同施肥措施下大豆根瘤菌的多样性有明显差异:N2P2处理的丰富度指数和Shannon-Wiener指数显著高于其他处理;OM处理的Simpson指数最高;N1和N2处理的3种多样性指数都显著低于其他处理。通径分析结果表明,p H、速效磷对多样性指数有较高的直接正效应;速效氮通过p H的间接负效应影响多样性指数。本研究表明,长期施用化肥改变了根瘤菌群体结构,单施氮肥减少大豆根瘤菌多样性,而氮肥磷肥混施则有助于提高大豆根瘤菌多样性。