Multispecies coexistence of trees in tropical forests: spatial signals of topographic niche differentiation increase with environmental heterogeneity

Neutral and niche theories give contrasting explanations for the maintenance of tropical tree species diversity. Both have some empirical support, but methods to disentangle their effects have not yet been developed. We applied a statistical measure of spatial structure to data from 14 large tropical forest plots to test a prediction of niche theory that is incompatible with neutral theory: that species in heterogeneous environments should separate out in space according to their niche preferences. We chose plots across a range of topographic heterogeneity, and tested whether pairwise spatial associations among species were more variable in more heterogeneous sites. We found strong support for this prediction, based on a strong positive relationship between variance in the spatial structure of species pairs and topographic heterogeneity across sites. We interpret this pattern as evidence of pervasive niche differentiation, which increases in importance with increasing environmental heterogeneity.     

Estradiol-17beta-D-glucuronide induces endocytic internalization of Bsep in rats

Endocytic internalization of the multidrug resistance-associated protein 2 (Mrp2) was previously suggested to be involved in estradiol-17beta-D-glucuronide (E217G)-induced cholestasis. Here we evaluated in the rat whether a similar phenomenon occurs with the bile salt export pump (Bsep) and the ability of DBcAMP to prevent it. E217G (15 micromol/kg i.v.) impaired bile salt (BS) output and induced Bsep internalization, as assessed by confocal microscopy and Western blotting. Neither cholestasis nor Bsep internalization occurred in TR- rats lacking Mrp2. DBcAMP (20 micromol/kg i.v.) partially prevented the decrease in bile flow and BS output and substantially prevented E217G-induced Bsep internalization. In hepatocyte couplets, E217G (50 microM) diminished canalicular accumulation of a fluorescent BS and decreased Bsep-associated fluorescence in the canalicular membrane; DBcAMP (10 microM) fully prevented both effects. In conclusion, our results suggest that changes in Bsep localization are involved in E217G-induced impairment of bile flow and BS transport and that DBcAMP prevents this effect by stimulating insertion of canalicular transporter-containing vesicles. Mrp2 is required for E217G to induce its harmful effect.     

Water penetration and binding to ferric myoglobin

Flash photolysis investigations of horse heart metmyoglobin bound with NO (Mb(3+)NO) reveal the kinetics of water entry and binding to the heme iron. Photodissociation of NO leaves the sample in the dehydrated Mb(3+) (5-coordinate) state. After NO photolysis and escape, a water molecule enters the heme pocket and binds to the heme iron, forming the 6-coordinate aquometMb state (Mb(3+)H2O). At longer times, NO displaces the H2O ligand to reestablish equilibrium. At 293 K, we determine a value k(w) approximately 5.7 x 10(6) s(-1) for the rate of H2O binding and estimate the H2O dissociation constant as 60 mM. The Arrhenius barrier height H(w) = 42 +/- 3 kJ/mol determined for H2O binding is identical to the barrier for CO escape after photolysis of Mb(2+)CO, within experimental uncertainty, consistent with a common mechanism for entry and exit of small molecules from the heme pocket. We propose that both processes are gated by displacement of His-64 from the heme pocket. We also observe that the bimolecular NO rebinding rate is enhanced by 3 orders of magnitude both for the H64L mutant, which does not bind water, and for the H64G mutant, where the bound water is no longer stabilized by hydrogen bonding with His-64. These results emphasize the importance of the hydrogen bond in stabilizing H2O binding and thus preventing NO scavenging by ferric heme proteins at physiological NO concentrations.     

微丝在卵母细胞成熟过程中的作用及调控

微丝作为细胞骨架的组成部分, 在卵母细胞成熟过程中的作用及调控近年来日益受到关注.微丝介导了卵母细胞中细胞器迁移、分散染色质收集、皮质重组、极性建立、第一极体排出等过程.现对微丝在卵母细胞的发育和成熟中作用机制的研究进展进行综述.     

Binding cavities and druggability of intrinsically disordered proteins

To assess the potential of intrinsically disordered proteins (IDPs) as drug design targets, we have analyzed the ligand-binding cavities of two datasets of IDPs (containing 37 and 16 entries, respectively) and compared their properties with those of conventional ordered (folded) proteins. IDPs were predicted to possess more binding cavity than ordered proteins at similar length, supporting the proposed advantage of IDPs economizing genome and protein resources. The cavity number has a wide distribution within each conformation ensemble for IDPs. The geometries of the cavities of IDPs differ from the cavities of ordered proteins, for example, the cavities of IDPs have larger surface areas and volumes, and are more likely to be composed of a single segment. The druggability of the cavities was examined, and the average druggable probability is estimated to be 9% for IDPs, which is almost twice that for ordered proteins (5%). Some IDPs with druggable cavities that are associated with diseases are listed. The optimism versus obstacles for drug design for IDPs is also briefly discussed.     

Partial purification of two forms of Choline kinase and separation of Choline kinase from sphingosine kinase of rat brain

Choline kinase of rat brain was purified approximately 200,000 fold using acid precipitation, ammonium sulphate fractionation, Q-Sepharose, Octyl-Sepharose and AH-Sepharose chromatography. The ability of this enzyme to catalyze the phosphorylation of choline, ethanolamine (Etn), monomethylethanolamine (MeEtn), dimethylethanolamine (Me₂Etn) and sphingosine was investigated. Choline kinase was separated from sphingosine kinase. The fraction with highly purified choline kinase had four major polypeptides with different molecular masses and possessed activities towards choline, Etn, MeEtn and Me₂Etn. Two forms of choline kinase were obtained when the enzymatically active fractions eluted from the Q-Sepharose column were subjected to a horizontal isoelectrofocusing electrophoresis. One form focused around pH 4.7 and is able to phosphorylate choline, Etn, MeEtn and Me₂Etn. The other form focused around pH 10 and possessed only choline kinase activity. The latter form of choline kinase did not display classical Michaelis-Menten's mechanism but revealed a positive co-operative pattern for two choline binding sites. This form was purified to apparent homogeneity with a approximate molecular mass of 14.4 kDa.Abbreviations Etn ethanolamine - MeEtn N-monomethylethanolamine - Me₂Etn N, N-dimethylethanolamine     

蚂蚁筑巢对不同恢复阶段热带森林土壤易氧化有机碳时空动态的影响

为探明热带森林恢复过程中蚂蚁筑巢对土壤易氧化有机碳(readily oxidizable carbon, ROC)时空动态的影响及机制, 本研究以西双版纳白背桐(Mallotus paniculatus)群落、野芭蕉(Musa acuminata)群落和崖豆藤(Mellettia leptobotrya)群落3种恢复阶段热带森林为研究对象, 设置“蚂蚁筑巢地”与“非巢地”2种处理进行野外控制实验, 对比分析蚁巢和非蚁巢土壤ROC含量的时空变化特征, 并揭示这些变化与土壤微生物生物量碳及理化性质之间的相互关系。结果表明: (1)蚂蚁筑巢显著影响热带森林土壤ROC含量(P < 0.05), 蚁巢土壤ROC含量较非蚁巢提高了14.2%。不同恢复阶段蚁巢与非蚁巢土壤ROC含量大小顺序为: 野芭蕉群落 > 崖豆藤群落 > 白背桐群落。(2)不同恢复阶段热带森林蚁巢与非蚁巢土壤ROC含量均呈单峰型的时间变化趋势(P < 0.05), 最大值出现在6月, 且各月份蚁巢土壤ROC含量均高于非蚁巢。(3)不同恢复阶段热带森林蚁巢和非蚁巢土壤ROC含量均随土层深度增加呈显著递减的垂直变化趋势(P < 0.05), 且蚁巢土壤ROC含量均大于非蚁巢(P < 0.05)。(4)蚂蚁筑巢引起的土壤理化性质变化对土壤ROC含量产生了一定的影响。土壤ROC含量与土壤pH和容重呈显著负相关(P < 0.05), 与土壤有机碳、微生物生物量碳、全氮、铵态氮及硝态氮呈显著正相关(P < 0.05)。土壤微生物生物量碳与总有机碳是蚁巢土壤ROC时空变化的主要贡献者, 而铵态氮、全氮和总有机碳是非蚁巢ROC时空变化的主控因子。因此, 蚂蚁筑巢改变热带森林土壤微生物量(如微生物生物量碳)及土壤理化性质(如总有机碳、铵态氮与全氮等), 进而显著影响土壤ROC的时空动态。     

土壤活性有机碳的表征及其生态效应

土壤活性有机碳指在一定的时空条件下,受植物、微生物影响强烈、具有一定溶解性、在土壤中移动比较快、不稳定、易氧化、分解、易矿化,其形态,空间位置对植物、微生物来说活性比较高的那一部分土壤碳素。国外描述这一部分碳素的术语为有效碳、水溶性碳、易氧化碳、可矿...