A class of goodness of fit tests for a copula based on bivariate right-censored data

The copula of a bivariate distribution, constructed by making marginal transformations of each component, captures all the information in the bivariate distribution about the dependence between two variables. For frailty models for bivariate data the choice of a family of distributions for the random frailty corresponds to the choice of a parametric family for the copula. A class of tests of the hypothesis that the copula is in a given parametric family, with unspecified association parameter, based on bivariate right censored data is proposed. These tests are based on first making marginal Kaplan-Meier transformations of the data and then comparing a non-parametric estimate of the copula to an estimate based on the assumed family of models. A number of options are available for choosing the scale and the distance measure for this comparison. Significance levels of the test are found by a modified bootstrap procedure. The procedure is used to check the appropriateness of a gamma or a positive stable frailty model in a set of survival data on Danish twins.     

Biogenic amines in the reduction of oxidative stress: melatonin and its metabolites

N-acetyl-5-methoxytryptamine (melatonin) is an endogenous indoleamine produced by all vertebrate organisms. Its production in the pineal gland has been extensively investigated but other organs also synthesize this important amine. Melatonin's functions in organisms are diverse. The actions considered in the current review relate to its ability to function in the reduction of oxidative stress, i.e., molecular damage produced by reactive oxygen and reactive nitrogen species. Numerous publications have now shown that not only is melatonin itself an efficient scavenger of free radicals and related reactants, but so are its by-products cyclic 3-hydroxymelatonin, N1-acetyl-N2-formyl-5-methoxykynuramine, and others. These derivatives are produced sequentially when each functions in the capacity of a free radical scavenger. These successive reactions are referred to as the antioxidant cascade of melatonin. That melatonin has this function within cells has been observed in studies employing time lapse conventional, confocal and multiphoton fluorescent microscopy coupled with the use of appropriate mitochondrial-targeted fluorescent probes. The benefits of melatonin and its metabolites have been described in the brain where they are found to be protective in models of Parkinson's disease, Alzheimer's disease and spinal cord injury. The reader is reminded, however, that data not covered in this review has documented beneficial actions of these amines in every organ where they have been tested. The outlook for the use of melatonin in clinical trials looks encouraging given its low toxicity and high efficacy.     

Responses of leaf gas exchange, water relations, and water consumption in seedlings of four semiarid tree species to soil drying

To understand the response patterns to soil drying and the water use properties of commonly reforested trees in the semiarid Loess Plateau region of China, a glasshouse experiment was carried out with the seedlings of four species, i.e., Robinia pseudoacacia, Armeniaca sibirica, Syringa oblata, and Quercus liaotungensis. Severe water stress induced by withholding water resulted in permanent wilting of most of the seedlings pot-cultured with sandy soil in 8–12 days. Predawn and midday leaf water potentials and gas exchange characteristics (e.g., stomatal conductance) in the seedlings did not show marked changes until the volumetric soil water content decreased to about 0.05. As the soil water content decreased further, these physiological parameters rapidly declined, approaching their minimal levels at the stage of permanent wilting. The response of each parameter to soil water content changes was fitted with a non-linear saturation curve. Though the results suggested that the general pattern of responses to soil drying was identical among the species, quantitative differences in drought tolerance and water use properties were detected. Leaf stomatal conductance in R. pseudoacacia and A. sibirica showed earlier responses to reduced predawn leaf water potentials. However, water use characteristics and specific leaf area indicated that these two species consumed more water and may not be as drought tolerant as S. oblata and Q. liaotungensis. These results may provide important information to compare the reforestation species with respect to soil drying.     

Critical role of mitochondrial reactive oxygen species formation in visible laser irradiation-induced apoptosis in rat brain astrocytes (RBA-1)

Laser irradiation-induced phototoxicity has been intensively applied in clinical photodynamic therapy for the treatment of a variety of tumors. However, the precise laser damage sites as well as the underlying mechanisms at the subcellular level are unknown. Using a mitochondrial fluorescent marker, MitoTracker Green, severe mitochondrial swelling was noted in laser-irradiated rat brain astrocytes. Nucleus condensation and fragmentation revealed by propidium iodide nucleic acid staining indicated that laser-irradiated cells died from apoptosis. Using an intracellular reactive oxygen species (ROS) fluorescent dye, 2,7-dichlorofluorescin diacetate, heterogeneous distribution of ROS inside astrocytes was observed after laser irradiation. The level of ROS in the mitochondrial compartment was found to be higher than in other parts of the cell. With another ROS fluorescent dye, dihydrorhodamine-123, and time-lapse laser scanning confocal microscopy, a substantial increase in mitochondrial ROS (mROS) was visualized in visible laser-irradiated astrocytes. The antioxidants melatonin and vitamin E largely attenuated laser irradiation-induced mROS formation and prevented apoptosis. Cyclosporin A (CsA), a mitochondrial permeability transition (MPT) blocker, did not prevent visible laser irradiation-induced mROS formation and apoptosis. In conclusion, mROS formation contributes significantly to visible laser irradiation-induced apoptosis via an MPT-independent pathway.     

Mitochondrial free Ca2+ concentration in living cells

Evidence has accrued during the past two decades that mitochondrial Ca²⁺ plays an important role in the regulation of numerous cell functions such as energy metabolism. This implies that mitochondrial Ca²⁺ transport systems might be able to relay the changes of cytosolic Ca²⁺ concentration ([Ca²⁺]_c) into mitochondrial matrix for regulating biochemical activities. To substantiate this idea, measurements of intramitochondrial free Ca²⁺ concentration ([Ca²⁺]_m) become essential. In this article, we review the results from recent studies attempting to measure [Ca²⁺]_m in living cells. In addition, the significance of each study is discussed.     

BK-induced COX-2 expression via PKC-delta-dependent activation of p42/p44 MAPK and NF-kappaB in astrocytes

Bradykinin (BK) is an inflammatory mediator, elevated levels in the region of several brain injury and inflammatory diseases. It has been shown to induce cyclooxygenase-2 (COX-2) expression implicating in inflammatory responses in various cell types. However, the signaling mechanisms underlying BK-induced COX-2 expression in astrocytes remain unclear. First, RT-PCR and Western blotting analysis showed that BK induced the expression of COX-2 mRNA and protein, which was inhibited by B(2) BK receptor antagonist Hoe140, suggesting the involvement of B(2) BK receptors. BK-induced COX-2 expression and translocation of PKC-delta from cytosol to membrane fraction were inhibited by rottlerin, suggesting that PKC-delta might be involved in these responses. This hypothesis was further supported by the transfection with a dominant negative plasmid of PKC-delta significantly blocked BK-induced COX-2 expression. BK-stimulated p42/p44 MAPK phosphorylation, COX-2 mRNA expression, and prostaglandin E(2) (PGE(2)) release were attenuated by PD98059, indicating the involvement of MEK/p42/p44 MAPK in this pathway. Accordingly, BK-stimulated phosphorylation of p42/p44 MAPK was attenuated by rottlerin, indicating that PKC-delta might be an upstream component of p42/p44 MAPK. Moreover, BK-induced COX-2 expression might be mediated through the translocation of NF-kappaB into nucleus which was blocked by helenalin, rottlerin and PD98059, implying the involvement of NF-kappaB. These results suggest that in RBA-1 cells, BK-induced COX-2 expression and PGE(2) release was sequentially mediated through PKC-delta-dependent activation of p42/p44 MAPK and NF-kappaB. Understanding the regulation of COX-2 expression and PGE(2) release induced by BK in astrocytes might provide a new therapeutic strategy of brain injury and inflammatory diseases.     

A comparison of pressure–volume curves with and without rehydration pretreatment in eight woody species of the semiarid Loess Plateau

Pressure–volume (P–V) curves are frequently used to analyze water relation properties of woody plants in response to transpiration-induced tissue water loss. In this study, P–V analyses were conducted on eight woody species growing in the semiarid Loess Plateau region of China during a relatively dry summer season using both the recently recommended instantaneous measurement and the traditional method with rehydration pretreatment. Generally, P–V-derived parameters in this study reflected conditions in a dry growth environment. Species-specific differences were also found among P–V parameters, suggesting each species uses different mechanisms to respond to drought. Based on the results from instantaneous measurements, a descending sequence for drought tolerance ranked by water potentials at the turgor loss point (Ψ^tlp) was Rosa hugonis > Syringa oblata = Armeniaca sibirica > Caragana microphylla > Pyrus betulaefolia > Acer stenolobum > Quercus liaotungensis > Robinia pseudoacacia. The first five species also showed lower levels of osmotic potential at full turgor (Ψ _π ^sat ) and higher symplastic osmotic solute content per dry weight, suggesting they possess advantages in osmotic adjustment. Also, this study supports previous reports noting rehydration pretreatment resulted in shifts in P–V parameters. The magnitude of the shifts varied with species and water conditions. The effect of rehydration was stronger for species with higher drought tolerance or subjected to the influence of drought. Differences in the parameters among species were mitigated as a result of rehydration. Those with a lower Ψ^tlp or midday water potential were more deeply affected by rehydration. Application of instantaneous measurements was strongly recommended for proper analysis of P–V curves particularly in arid and semiarid areas.     

Comparing Reference Charts

Reference charts are valuable tools for clinicians in their daily work on pediatric clinics. Reference charts are often constructed by smoothing techniques, and in this paper we present a newly developed non-parametric test for comparing these charts. We illustrate the method by an example. The worked example compares cross-sectional data on height in children from two Danish studies from 1970 and 1990, respectively. The test compares the average height over the range of ages for the two groups.     

Predicting cumulative incidence probability by direct binomial regression

We suggest a new simple approach for estimation and assessmentof covariate effects for the cumulative incidence curve in thecompeting risks model. We consider a semiparametric regressionmodel where some effects may be time-varying and some may beconstant over time. Our estimator can be implemented by standardsoftware. Our simulation study shows that the estimator workswell and has finite-sample properties comparable with the subdistributionapproach. We apply the method to bone marrow transplant dataand estimate the cumulative incidence of death in complete remissionfollowing a bone marrow transplantation. Here death in completeremission and relapse are two competing events.