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Mehregan Movassagh Mun-Kit Choy Martin Goddard Martin R. Bennett Thomas A. Down Roger S.-Y. Foo 《PloS one》2010,5(1)
Epigenetic mechanisms such as microRNA and histone modification are crucially responsible for dysregulated gene expression in heart failure. In contrast, the role of DNA methylation, another well-characterized epigenetic mark, is unknown. In order to examine whether human cardiomyopathy of different etiologies are connected by a unifying pattern of DNA methylation pattern, we undertook profiling with ischaemic and idiopathic end-stage cardiomyopathic left ventricular (LV) explants from patients who had undergone cardiac transplantation compared to normal control. We performed a preliminary analysis using methylated-DNA immunoprecipitation-chip (MeDIP-chip), validated differential methylation loci by bisulfite-(BS) PCR and high throughput sequencing, and identified 3 angiogenesis-related genetic loci that were differentially methylated. Using quantitative RT-PCR, we found that the expression of these genes differed significantly between CM hearts and normal control (p<0.01). Moreover, for each individual LV tissue, differential methylation showed a predicted correlation to differential expression of the corresponding gene. Thus, differential DNA methylation exists in human cardiomyopathy. In this series of heterogenous cardiomyopathic LV explants, differential DNA methylation was found in at least 3 angiogenesis-related genes. While in other systems, changes in DNA methylation at specific genomic loci usually precede changes in the expression of corresponding genes, our current findings in cardiomyopathy merit further investigation to determine whether DNA methylation changes play a causative role in the progression of heart failure. 相似文献
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Dispersal is an important component in the demography of animal populations. Many animals show seasonal changes in their tendency to disperse, reflecting changes in resource availability, mating opportunities, or in population age structure at the time when new offspring enter the population. Understanding when and why dispersal occurs can be important for the management of endangered species. The pygmy bluetongue lizard is an endangered Australian species that occupies and defends single burrow refuges for extended periods of time, rarely moving far from the burrow entrance. However, previous pitfall trapping data have suggested movement of adult males in spring and of juveniles in autumn of each year. In the current study we compared behaviours of adult lizards each month, over the spring-summer activity period over two consecutive field seasons, to provide deeper understanding of the seasonal dispersal pattern. We released adult pygmy bluetongue lizards into a central area, provided with artificial burrows, within large enclosures, and monitored the behaviour and movements of the released lizards over a four day period. There was a consistent decline in time spent basking, amount of movement around burrow entrances, and rates of dispersal from the central release area from early spring to late summer. Results could be relevant to understanding and managing natural populations and for any translocation attempts of this endangered lizard species. 相似文献
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Syed Haider Lina Cordeddu Emma Robinson Mehregan Movassagh Lee Siggens Ana Vujic Mun-Kit Choy Martin Goddard Pietro Lio Roger Foo 《Genome biology》2012,13(10):1-9
DNA methylation is a chemical modification of cytosine bases that is pivotal for gene regulation, cellular specification and cancer development. Here, we describe an R package, methylKit, that rapidly analyzes genome-wide cytosine epigenetic profiles from high-throughput methylation and hydroxymethylation sequencing experiments. methylKit includes functions for clustering, sample quality visualization, differential methylation analysis and annotation features, thus automating and simplifying many of the steps for discerning statistically significant bases or regions of DNA methylation. Finally, we demonstrate methylKit on breast cancer data, in which we find statistically significant regions of differential methylation and stratify tumor subtypes. methylKit is available at http://code.google.com/p/methylkit. 相似文献
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Elmira Jalilian Qiuyun Xu Luke Horton Audrey Fotouhi Shriya Reddy Rayyan Manwar Steven Daveluy Darius Mehregan Juri Gelovani Kamran Avanaki 《Journal of biophotonics》2020,13(5)
Optical coherence tomography (OCT), with a high‐spatial resolution (<10 microns), intermediate penetration depth (~1.5 mm) and volumetric imaging capability is a great candidate to be used as a diagnostic‐assistant modality in dermatology. At this time, the accuracy of OCT for melanoma detection is lower than anticipated. In this letter, we studied for the first time, the use of a novel contrast agent consist of ultra‐small nanoparticles conjugated to a melanoma biomarker to improve the accuracy of OCT for differentiation of melanoma cells from nonmelanoma cells, in vitro. We call this approach SMall nanoparticle Aggregation‐enhanced Radiomics of Tumor (SMART)‐OCT imaging. This initial proof of concept study is the first step toward the broad utilization of this method for high accuracy all types of tumor detection applications. 相似文献
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Embryonic and early development of the Zagros tooth‐carp,Aphanius vladykovi (Actinopterygii: Cyprinodontidae) 下载免费PDF全文
Nafiseh Sanjarani Vahed Hamid Reza Esmaeili Mojtaba Masoudi Mehregan Ebrahimi 《Journal of morphology》2018,279(6):747-756
The embryonic and early larval development of laboratory reared Zagros tooth‐carp, Aphanius vladykovi Coad, 1988, are described and illustrated. Development and embryogenesis start with the external fertilization of sticky, transparent and spherical telolecithal/macrolecithal eggs with a mean diameter of 1.61± 0.12 mm and it continues with meroblastic/radial cleavage, blastulation/blastula formation, epibolic cell migration during gastrulation and organogenesis resulting in a newly hatched larvae of 5.23 ± 0.09 mm in length with attached yolk sac at about 164 hr (at 24 ± 1°C) after fertilization. 相似文献
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Kazemeini Fatemeh Asri Younes Mostafavi Golaleh Kalvandi Ramezan Mehregan Iraj 《Molecular biology reports》2020,47(12):9345-9352
Molecular Biology Reports - Rhabosciadium aucheri is an Iranian endemic herbaceous species that grows in the west, center, and south regions of Iran. In the present study, genetic variation of 70... 相似文献
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