Nickel controls the reversible anaerobic activation/inactivation of the Desulfovibrio gigas hydrogenase by the redox potential

An electrochemical method of hydrogenase activity measurement is developed. It permits a new approach to the activation/inactivation process of the Desulfovibrio gigas hydrogenase. A monolayer of hydrogenase is grafted onto a glassy carbon electrode which is both the support of the enzyme and the detector of the activity. The physicochemical composition of the enzyme microenvironment is thus well defined and easily controlled by the electrode potential. Successive periods of inactivation and activation are applied to the same hydrogenase molecules, thus the activity can be correlated to the chronology of the experiments. We distinguish two kinds of activation/inactivation processes. The first one, already described for the enzyme stored for some months in aerobic conditions, is a slow activation by molecular hydrogen or a reducing medium (half-reaction time = 2 h). The second one is an anaerobic inactivation by an oxidizing potential. This first order inactivation (half-reaction time = 10 min) is fully reversible. This modulation of the activity level is controlled by an Ni(III)/Ni(II) redox couple (Eh = -455 mV/calomel-saturated KCl electrode at pH 8.3) involving one electron and one proton. This work proposes an explanation for the activation of the hydrogenase taking into account the participation of an [Fe-S] cluster and of the nickel atom.     

A murine model of infection with Rickettsia prowazekii: implications for pathogenesis of epidemic typhus

Epidemic typhus remains a major disease threat, furthermore, its etiologic agent, Rickettsia prowazekii, is classified as a bioterrorism agent. We describe here a murine model of epidemic typhus that reproduced some features of the human disease. When BALB/c mice were inoculated intravenously with R. prowazekii (Breinl strain), they survived but did not clear R. prowazekii infection. Immunohistological analysis of tissues and quantitative PCR showed that R. prowazekii was present in blood, liver, lungs and brain 1 day after infection and persisted for at least 9 days. Importantly, infected mice developed interstitial pneumonia, with consolidation of the alveoli, hemorrhages in lungs, multifocal granulomas in liver, and hemorrhages in brain, as seen in humans. Circulating antibodies directed against R. prowazekii were detected at day 4 post-infection and steadily increased for up to 21 days, demonstrating that R. prowazekii lesions were independent of humoral immune response. R. prowazekii-induced lesions were associated with inflammatory response, as demonstrated by elevated levels of inflammatory cytokines including interferon-gamma, tumor necrosis factor and the CC chemokine RANTES in the lesions. We concluded that the BALB/c mouse strain provides a useful model for studying the pathogenic mechanisms of epidemic typhus and its control by the immune system.     

Hon-yaku: a biology-driven Bayesian methodology for identifying translation initiation sites in prokaryotes

Background  

Computational prediction methods are currently used to identify genes in prokaryote genomes. However, identification of the correct translation initiation sites remains a difficult task. Accurate translation initiation sites (TISs) are important not only for the annotation of unknown proteins but also for the prediction of operons, promoters, and small non-coding RNA genes, as this typically makes use of the intergenic distance. A further problem is that most existing methods are optimized for Escherichia coli data sets; applying these methods to newly sequenced bacterial genomes may not result in an equivalent level of accuracy.     

Site localization of sialyl Lewis(x) antigen on alpha1-acid glycoprotein by high performance liquid chromatography-electrospray mass spectrometry

A simple, fast and sensitive method was developed to verify the presence of the sialyl Lewis(x) antigen on an N-linked glycoprotein. High performance liquid chromatography-electrospray mass spectrometry (HPLC-ESI/MS) was used to identify which of the five N-linked glycosylation sites of human plasma alpha1-acid-glycoprotein (orosomucoid, OMD) contain the sialyl Lewis(x) antigen. OMD was digested with proteolytic enzymes and analyzed by reversed phase chromatography coupled with on-line ESI/MS. A tandem mass spectrometry experiment was designed to detect the presence of the sialyl Lewis(x) antigen based on the observation of an 803 mass to charge ratio ( m/z ) ion produced in the intermediate pressure region of the ESI interface. The ESI/MS signal at m/z 803 is consistent with an oxonium ion for a glycan structure containing NeuAc, Gal, GlcNAc, and Fuc. The identity of the m/z 803 ion was confirmed by ESI/MS/MS analysis of the m/z 803 fragment ion and comparison with a sialyl Lewis(x) standard. The stereochemistry and linkage positions were assigned using previous NMR analysis but could be determined with permethylation analysis if necessary. The analysis of OMD gave a pattern showing signal for the sialyl Lewis(x) antigen coeluting with each of the five N-linked glycopeptides. The ability to monitor sialyl Lewis(x) expression at each of the five sites is of interest in the study of OMD's role in inflammatory diseases.      

Analysis of cell structural and functional diversity by combination of micromanipulation and microfluorimetry

Fluorescent molecules are widely used to study quantitative cell properties, such as density of different antigenic markers or membrane responses to various stimuli. In most cases, studies are done on bulk cell populations with a spectrofluorimeter or at the single cell level with a cytofluorograph. However, only microspectrofluorimetric techniques allow continuous recording of dynamic events undergone by individual cells. The aim of the present report was twofold: first, to describe a methodology easily accessible to cell biologists that allows simultaneous manipulation of single cells and measurements of their fluorescence properties; and second, through this methodology to study quantitative aspects of cell structure and function such as binding of a fluorescein-labeled lectin, transfer of fluorescent molecules between labeled and unlabeled cells brought in close contact, or fluorescence response of individual cells stimulated after being loaded with a potential-sensitive dye. We conclude that the understanding of many aspects of cell structure and behavior requires that individual cells be studied under dynamic conditions and for prolonged periods of time.