Return migration of Atlantic Salmon in the River Tana: Phases of migratory behaviour

From a total of 174 multi-sea-winter Atlantic salmon radio tagged in the Tanafjord (northern Norway, 70°N) during 1992 and 1993, 48 Atlantic salmon were followed from entering the River Tana until spawning. Three phases were identified: (1) migratory, direct or stepwise migration to, or close to the position held at spawning; (2) search, movements both up and down river at or close to the position held at spawning; (3) holding, a period without movements prior to spawning. During the migratory phase, Atlantic salmon migrated directly to near the spawning area, or stopped between one and nine shorter periods during the upstream migration. Number of stops increased with increasing migratory distance in 1993, but no such correlation was found in 1992. The highest migratory speeds were recorded in the lower parts of the river. A distinct change in migratory pattern was found in 67% of the Atlantic salmon near or at the area held at spawning. Most common was a search phase of erratic movements with more than one down river movement. After the movement terminated, 96% of the Atlantic salmon had a period when no or little movement was recorded until spawning (on average 55 days in 1992 and 51 days in 1993). There was no preference for staying at, up or down river from the spawning area during this holding period. Early ascending Atlantic salmon migrated to spawning areas further from the mouth than the later arriving Atlantic salmon in 1993, but not in 1992. The proportion of time spent on the migratory phase increased, while the proportion of time spent on the holding phase decreased with increasing distance to the spawning area.     

Diversity and characterization of sulfate-reducing bacteria in groundwater at a uranium mill tailings site.

Microbially mediated reduction and immobilization of U(VI) to U(IV) plays a role in both natural attenuation and accelerated bioremediation of uranium-contaminated sites. To realize bioremediation potential and accurately predict natural attenuation, it is important to first understand the microbial diversity of such sites. In this paper, the distribution of sulfate-reducing bacteria (SRB) in contaminated groundwater associated with a uranium mill tailings disposal site at Shiprock, N.Mex., was investigated. Two culture-independent analyses were employed: sequencing of clone libraries of PCR-amplified dissimilatory sulfite reductase (DSR) gene fragments and phospholipid fatty acid (PLFA) biomarker analysis. A remarkable diversity among the DSR sequences was revealed, including sequences from delta-Proteobacteria, gram-positive organisms, and the Nitrospira division. PLFA analysis detected at least 52 different mid-chain-branched saturate PLFA and included a high proportion of 10me16:0. Desulfotomaculum and Desulfotomaculum-like sequences were the most dominant DSR genes detected. Those belonging to SRB within delta-Proteobacteria were mainly recovered from low-uranium (< or =302 ppb) samples. One Desulfotomaculum-like sequence cluster overwhelmingly dominated high-U (>1,500 ppb) sites. Logistic regression showed a significant influence of uranium concentration over the dominance of this cluster of sequences (P = 0.0001). This strong association indicates that Desulfotomaculum has remarkable tolerance and adaptation to high levels of uranium and suggests the organism's possible involvement in natural attenuation of uranium. The in situ activity level of Desulfotomaculum in uranium-contaminated environments and its comparison to the activities of other SRB and other functional groups should be an important area for future research.     

An Examination of Utilizing External Measures to Identify Sexually Maturing Female American Eels, Anguilla Rostrata, in the St. Lawrence River

It is well established that Anguillid eels undergo a complex suite of morphological and physiological changes during their transformation from resident, yellow-phase juveniles to actively migrating silver-phase eels. While it has been shown that some morphological measures can be used successfully to identify sexually maturing European eels, Anguilla anguilla, as well as Australian short fin, Anguilla australis, and long fin, Anguilla dieffenbachii eels, this relationship has never been quantitatively assessed for American eels, Anguilla rostrata. American eels of varying sexual development were collected from three locations on the St. Lawrence River: Lake St. Lawrence, Quebec City and Kamouraska. Sexual development of each eel was assessed with gonadosomatic index (GSI), oocyte diameter and degree of oocyte development. Morphological measures of total length, weight, head width, pectoral fin length and vertical and horizontal eye diameters were obtained from each fish. We used this data to test two hypotheses: (i) resident yellow phase eels, suspected migrants and known migrants are morphologically indistinguishable; and (ii) if differences exist, they cannot be used to reliably predict gonadal development or migratory status. Univariate analysis (ANOVA and ANCOVA) indicated that there were highly significant differences in all of the measured parameters and thus we were able to reject the first hypothesis. However, we failed to reject the second hypothesis as the high degree of overlap between groups eliminated the ability of any single measure to differentiate between resident and migratory eels. A multivariate discriminant model was developed that could classify only 72–80% of the eels correctly based on their morphological characters. While morphological measures may have some potential as a rapid, cost-effective method of pre-screening individual eels, morphological measures should not be considered a definitive indicator of sexual maturity or migratory status for female American eels in the Upper St. Lawrence River.     

Effect of Electron Donor and Solution Chemistry on Products of Dissimilatory Reduction of Technetium by Shewanella putrefaciens

To help provide a fundamental basis for use of microbial dissimilatory reduction processes in separating or immobilizing ⁹⁹Tc in waste or groundwaters, the effects of electron donor and the presence of the bicarbonate ion on the rate and extent of pertechnetate ion [Tc(VII)O₄⁻] enzymatic reduction by the subsurface metal-reducing bacterium Shewanella putrefaciens CN32 were determined, and the forms of aqueous and solid-phase reduction products were evaluated through a combination of high-resolution transmission electron microscopy, X-ray absorption spectroscopy, and thermodynamic calculations. When H₂ served as the electron donor, dissolved Tc(VII) was rapidly reduced to amorphous Tc(IV) hydrous oxide, which was largely associated with the cell in unbuffered 0.85% NaCl and with extracellular particulates (0.2 to 0.001 μm) in bicarbonate buffer. Cell-associated Tc was present principally in the periplasm and outside the outer membrane. The reduction rate was much lower when lactate was the electron donor, with extracellular Tc(IV) hydrous oxide the dominant solid-phase reduction product, but in bicarbonate systems much less Tc(IV) was associated directly with the cell and solid-phase Tc(IV) carbonate may have been present. In the presence of carbonate, soluble (<0.001 μm) electronegative, Tc(IV) carbonate complexes were also formed that exceeded Tc(VII)O₄⁻ in electrophoretic mobility. Thermodynamic calculations indicate that the dominant reduced Tc species identified in the experiments would be stable over a range of E_h and pH conditions typical of natural waters. Thus, carbonate complexes may represent an important pathway for Tc transport in anaerobic subsurface environments, where it has generally been assumed that Tc mobility is controlled by low-solubility Tc(IV) hydrous oxide and adsorptive, aqueous Tc(IV) hydrolysis products.     

Topographic organization of baboon primary motor cortex: face, hand, forelimb, and shoulder representation

(1) The fine details of the motor organization of the forelimb, face, and tongue representation of the baboon (Papio h. anubis) primary motor cortex were studied in four adult animals, using intracortical microstimulation (ICMS). (2) A total of 293 electrode penetrations were made. ICMS was delivered to 10,052 sites, and of these, 6,186 sites were verified to have been located within the grey matter. Motor effects were evoked from 30% of these sites. (3) The baboon motor cortex is confined, in large part, to the cortical tissue lying along the anterior bank of the central sulcus. When the electrode penetrations were confined to the precentral gyrus, few sites were capable of evoking movement when stimulated by currents of 40 microA or less. (4) The details of the motor maps varied among the four animals; nonetheless, a general topographic organization existed, with the tongue musculature being represented most laterally, followed by a medial progression of the face, digits, wrist, forearm, and shoulder. Within the representation of a given body part, the muscles were organized as a mosaic, wherein the same muscle was multiply represented. (5) A zone of unresponsive cortex was observed to lie consistently between the face and forelimb representation in all four animals. Repeated electrode penetrations within the unresponsive zone failed to elicit muscle contractions even with stimulating currents as high as 80 microA. (6) Our results suggest that the baboon motor cortex is topographically organized; however, embedded within this overall pattern lies a fine-grained mosaic incorporating multiple representations of the same muscle.     

A model invalidation-based approach for elucidating biological signalling pathways,applied to the chemotaxis pathway in R. sphaeroides

Background  

Developing methods for understanding the connectivity of signalling pathways is a major challenge in biological research. For this purpose, mathematical models are routinely developed based on experimental observations, which also allow the prediction of the system behaviour under different experimental conditions. Often, however, the same experimental data can be represented by several competing network models.