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201.
Cytosolic isocitrate dehydrogenase in humans, mice, and voles and phylogenetic analysis of the enzyme family 总被引:3,自引:0,他引:3
Nekrutenko A; Hillis DM; Patton JC; Bradley RD; Baker RJ 《Molecular biology and evolution》1998,15(12):1674-1684
In this study, we report cDNA sequences of the cytosolic NADP-dependent
isocitrate dehydrogenase for humans, mice, and two species of voles
(Microtus mexicanus and Microtus ochrogaster). Inferred amino acid
sequences from these taxa display a high level of amino acid sequence
conservation, comparable to that of myosin beta heavy chain, and share
known structural features. A Caenorhabditis elegans enzyme that was
previously identified as a protein similar to isocitrate dehydrogenase is
most likely the NADP-dependent cytosolic isocitrate dehydrogenase enzyme
equivalent, based on amino acid similarity to mammalian enzymes and
phylogenetic analysis. We also suggest that NADP-dependent isocitrate
dehydrogenases characterized from alfalfa, soybean, and eucalyptus are most
likely cytosolic enzymes. The phylogenetic tree of various isocitrate
dehydrogenases from eukaryotic sources revealed that independent gene
duplications may have given rise to the cytosolic and mitochondrial forms
of NADP-dependent isocitrate dehydrogenase in animals and fungi. There
appears to be no statistical support for a hypothesis that the
mitochondrial and cytosolic forms of the enzyme are orthologous in these
groups. A possible scenario of the evolution of NADP-dependent isocitrate
dehydrogenases is proposed.
相似文献
202.
203.
Phylogenetic utility of elongation factor-1 alpha in noctuoidea (Insecta: Lepidoptera): the limits of synonymous substitution 总被引:1,自引:1,他引:1
Mitchell A; Cho S; Regier JC; Mitter C; Poole RW; Matthews M 《Molecular biology and evolution》1997,14(4):381-390
To test its phylogenetic utility, nucleotide sequence variation in a
1,240-bp fragment of the elongation factor-1 alpha (EF-1 alpha) gene was
examined in 49 moth species representing the major groups of the
superfamily Noctuoidea. Both parsimony and distance analyses supported the
monophyly of nearly all groups for which there are clear morphological
synapomorphies. Clades of subfamily rank and lower, probably mid-Tertiary
and younger, were strongly supported. The third codon position contains 88%
of variable sites, and approaches saturation at approximately 20% sequence
divergence, possibly due to among-site rate heterogeneity and composition
bias; higher divergences occur only in association with shifts in
composition. Surprisingly, the few nonsynonymous changes appear no more
phylogenetically reliable than synonymous changes. Signal strength for
basal divergences is weak and fails to improve with character weighting;
thus, dense taxon sampling is probably needed for strong inference from
EF-1 alpha regarding deeper splits in Noctuoidea (probably early Tertiary).
EF-1 alpha synonymous changes show promise for phylogeny reconstruction
within Noctuidae and other groups of Tertiary age.
相似文献
204.
205.
S. G. Thompson P. T.-H. Wong S. F. Leong† E. G. McGeer 《Journal of neurochemistry》1985,45(6):1791-1796
A possible alternative route for production of a small glutamate pool in brain is from proline or ornithine to 1-pyrroline-5-carboxylate (P5C) and thence to glutamate. The conversion from ornithine to P5C is catalyzed by ornithine delta-aminotransferase (OrnT) whereas that from proline is catalyzed by proline oxidase (PrO). The conversion of P5C to glutamate is catalyzed by 1-pyrroline-5-carboxylate dehydrogenase (PDH). Biochemical assays of PDH and PrO in various rat brain regions indicate no positive correlation between the two enzymes nor between either activity and high-affinity glutamate uptake or the regional distribution of OrnT. We have localized PDH and PrO histochemically by modifications of the Van Gelder [J. Neurochem. 12, 231-237, (1965)] method for gamma-aminobutyric acid (GABA) transaminase. The enzymes were found only in certain types of glial cells; the best stained were the Bergmann glial cells of the cerebellum but, for PDH, there was also good staining of astrocytes in the dentate area of the hippocampus. Since both these areas are believed to have heavy glutamate innervation and numerous GABA interneurons, these findings may reflect an alternative route of glutamate production in glial cells near some glutamate and/or GABA tracts but they do not support this as a possible route for glutamate formation in most brain regions. The findings do, however, provide further evidence for chemical specialization of glial cells. 相似文献
206.
Radioactive GBA accumulation by embryonic chick tectal tissue under conditions suitable for high affinity GABA uptake showed a marked increase with age. There was excellent correlation between the GABA accumulation and the GAD activity from the eighth to the twentieth embryonic day, suggesting that both may reflect primarily synaptic development. 相似文献
207.
Caroline B Michielse Ringo van Wijk Linda Reijnen Ben JC Cornelissen Martijn Rep 《Genome biology》2009,10(1):R4-18
Background
Fusarium oxysporum f. sp. lycopersici is the causal agent of vascular wilt disease in tomato. In order to gain more insight into the molecular processes in F. oxysporum necessary for pathogenesis and to uncover the genes involved, we used Agrobacterium-mediated insertional mutagenesis to generate 10,290 transformants and screened the transformants for loss or reduction of pathogenicity. 相似文献208.
209.
210.