Population variability complicates the accurate detection of climate change responses

The rush to assess species’ responses to anthropogenic climate change (CC) has underestimated the importance of interannual population variability (PV). Researchers assume sampling rigor alone will lead to an accurate detection of response regardless of the underlying population fluctuations of the species under consideration. Using population simulations across a realistic, empirically based gradient in PV, we show that moderate to high PV can lead to opposite and biased conclusions about CC responses. Between pre‐ and post‐CC sampling bouts of modeled populations as in resurvey studies, there is: (i) A 50% probability of erroneously detecting the opposite trend in population abundance change and nearly zero probability of detecting no change. (ii) Across multiple years of sampling, it is nearly impossible to accurately detect any directional shift in population sizes with even moderate PV. (iii) There is up to 50% probability of detecting a population extirpation when the species is present, but in very low natural abundances. (iv) Under scenarios of moderate to high PV across a species’ range or at the range edges, there is a bias toward erroneous detection of range shifts or contractions. Essentially, the frequency and magnitude of population peaks and troughs greatly impact the accuracy of our CC response measurements. Species with moderate to high PV (many small vertebrates, invertebrates, and annual plants) may be inaccurate ‘canaries in the coal mine’ for CC without pertinent demographic analyses and additional repeat sampling. Variation in PV may explain some idiosyncrasies in CC responses detected so far and urgently needs more careful consideration in design and analysis of CC responses.     

Cervical necrotizing fasciitis and myositis in a western lowland gorilla (Gorilla gorilla gorilla)

A 39-yr-old wild-caught, female western lowland gorilla ( Gorilla gorilla gorilla ) died during an immobilization to assess swelling and apparent pain of the cervical region. Necropsy revealed a fistulous tract containing plant material in the oropharynx, above the soft palate, communicating with a left-sided cervical necrotizing fasciitis and myositis. Alpha-hemolytic Streptococcus and Prevotella sp. were isolated from the cervical lesion . This is a report of cervical necrotizing fasciitis in a western lowland gorilla.     

Tracking nucleolar dynamics with GFP-Nopp140 during Drosophila oogenesis and embryogenesis

We expressed two green fluorescent protein (GFP)-tagged Nopp140 isoforms in transgenic Drosophila melanogaster to study nucleolar dynamics during oogenesis and early embryogenesis. Specifically, we wanted to test whether the quiescent oocyte nucleus stored maternal Nopp140 and then to determine precisely when nucleoli formed during embryogenesis. During oogenesis nurse cell nucleoli accumulated GFP-Nopp140 gradually such that posterior nurse cell nucleoli in egg chambers at stage 10 were usually brighter than the more anterior nurse cell nucleoli. Nucleoli within apoptotic nurse cells disassembled in stages 12 and 13, but not all GFP-Nopp140 entered the oocyte through inter-connecting cytoplasmic bridges. Oocytes, on the other hand, lost their nucleoli by stage 3, but GFP-Nopp140 gradually accumulated in oocyte nuclei during stages 8–13. Most oocyte nuclei at stage 10 stored GFP-Nopp140 uniformly, but many stage 10 oocytes accumulated GFP-Nopp140 in presumed endobodies or in multiple smaller spheres. All oocyte nuclei at stages 11-12 were uniformly labeled, and GFP-Nopp140 diffused to the cytoplasm upon nuclear disassembly in stage 13. GFP-Nopp140 reappeared during embryogenesis; initial nucleologenesis occurred in peripheral somatic nuclei during embryonic stage 13, one stage earlier than reported previously. These GFP-Nopp140-containing foci disassembled at the 13th syncytial mitosis, and a second nucleologenesis occurred in early stage 14. The resulting nucleoli occupied nuclear regions closest to the periphery of the embryos. Pole cells contained GFP-Nopp140 during the syncytial embryonic stages, but their nucleologenesis started at gastrulation. This work was supported by the National Science Foundation (grant MCB-0234245). O'Keith Dellafosse was supported by the Louisiana Alliance for Minority Participation (LAMP).     

NMR Study of Chloroplast Water in Acer platanoides: Water Exchange at Membrane-Bound Sites and Across the Chloroplast Envelope Membrane

Abstract: Nuclear magnetic resonance (NMR) spin relaxation techniques were used to measure the rate of water exchange across the chloroplast envelope membrane and to detect exchange of water-hydrogens between the bound and fluid states in Acer platanoides shade leaves. Results indicate that individual water molecules resided within a chloroplast for 320 ± 65 ms, on average, before exchanging through the envelope, and that exchangable bound hydrogens are at least six times more abundant in the chloroplast than in the nonchloroplast compartments.     

Mycorrhizal suppression alters plant productivity and forb establishment in a grass-dominated prairie restoration

A fundamental goal of restoration is the re-establishment of plant diversity representative of native vegetation. However, many prairie restorations or Conservation Reserve Program sites have been seeded with warm-season grasses, leading to grass-dominated, low-diversity restorations not representative of native grasslands. These dominant grasses are strongly mycotrophic, while many subordinate forb species appear to be less dependent on mycorrhizal symbiosis. Therefore, manipulating arbuscular mycorrhizal fungi (AMF) may be useful in promoting establishment and growth of forb species in grass-dominated prairie restorations. To assess the potential role of mycorrhizae in affecting the productivity and community composition of restored tallgrass prairie, we conducted a 4-year field experiment on an 8-year-old grassland restoration at the Konza Prairie in northeastern Kansas, USA. At the initiation of our study, seeds of 12 forb species varying in degree of mycorrhizal dependence were added to established grass-dominated plots. Replicate plots were treated bi-weekly with a soil drench of fungicide (Topsin-M^®) over four growing seasons and compared to non-treated control plots to assess the role of AMF in affecting plant species composition, productivity, leaf tissue quality, and diversity in restored tallgrass prairie. Topsin applications successfully reduced mycorrhizal colonization of grass roots to approximately 60–80% relative to roots in control plots. Four years of mycorrhizal suppression reduced productivity of the dominant grasses and increased plant species richness and diversity. These results highlight the importance of mycorrhizae as mediators of plant productivity and community dynamics in restored tallgrass prairie and indicate that temporarily suppressing AMF decreases productivity of the dominant C4 grasses and allows for establishment of seeded forb species.     

The effect of attractant lures in camera trapping: a case study of population estimates for the Iberian lynx (Lynx pardinus)

Capture–recapture analysis of camera trap data is a conventional method to estimate the abundance of free-ranging wild felids. Due to notorious low detection rates of felids, it is important to increase the detection probability during sampling. In this study, we report the effectiveness of attractants as a tool for improving the efficiency of camera trap sampling in abundance estimation of Iberian lynx. We developed a grid system of camera stations in which stations with and without attractant lures were spatially alternated across known Iberian lynx habitat. Of the ten individuals identified, five were detected at stations with no attractant (blind sets), and nine, at the lured stations. Thirty-eight percent of blind set station’s independent captures and 10?% of lured station’s independent captures resulted in photographs unsuitable for correct individual identification. The total capture probability at lured stations was higher than that obtained at blind set stations. The estimates obtained with blind set cameras underestimated the number of lynxes compared to lured cameras. In our study, it appears that the use of lures increased the efficiency of trail camera captures and, therefore, the accuracy of capture–recapture analysis. The observed failure to detect known individuals at blind set camera stations may violate capture–recapture assumptions and bias abundance estimates.     

A common breakpoint on 11q23 in carriers of the constitutional t(11;22) translocation

Structural chromosomal rearrangements occur commonly in the general population. Individuals that carry a balanced translocation are at risk of having unbalanced offspring; therefore, the frequency of translocations in couples with recurrent spontaneous abortions is higher than that in the general population. The constitutional t(11;22) translocation is the most common recurrent non-Robertsonian translocation in humans and may serve as a model to determine the mechanism that causes recurrent meiotic translocations. We previously localized the t(11;22) translocation breakpoint to a region on 22q11 within a low-copy repeat, termed "LCR22." To define the breakpoint on 11q23 and to ascertain whether this region shares homology with LCR22 sequences, we performed haplotype analysis on patients with der(22) syndrome. We found that the breakpoint on 11q23 occurred between two genetic markers, D11S1340 and APOC3-tetra, both being present within a single bacterial-artificial-chromosome clone. To determine whether the breakpoint occurred within the same region among a larger set of carriers, we performed FISH mapping studies. The breakpoints were all within the same clone, suggesting that this region may harbor sequences that are prone to breakage. We narrowed the breakpoint interval, in both derivative chromosomes from two unrelated carriers, to a 190-bp, AT-rich repeat, which indicates that this repeat may mediate recombination events on chromosome 11. Interestingly, the LCR22s harbor AT-rich repeats, suggesting that this sequence motif may mediate recombination events in nonhomologous chromosomes during meiosis.     

Disentangling elevational richness: a multi‐scale hierarchical Bayesian occupancy model of Colorado ant communities

Understanding the forces that shape the distribution of biodiversity across spatial scales is central in ecology and critical to effective conservation. To assess effects of possible richness drivers, we sampled ant communities on four elevational transects across two mountain ranges in Colorado, USA, with seven or eight sites on each transect and twenty repeatedly sampled pitfall trap pairs at each site each for a total of 90 d. With a multi‐scale hierarchical Bayesian community occupancy model, we simultaneously evaluated the effects of temperature, productivity, area, habitat diversity, vegetation structure, and temperature variability on ant richness at two spatial scales, quantifying detection error and genus‐level phylogenetic effects. We fit the model with data from one mountain range and tested predictive ability with data from the other mountain range. In total, we detected 105 ant species, and richness peaked at intermediate elevations on each transect. Species‐specific thermal preferences drove richness at each elevation with marginal effects of site‐scale productivity. Trap‐scale richness was primarily influenced by elevation‐scale variables along with a negative impact of canopy cover. Soil diversity had a marginal negative effect while daily temperature variation had a marginal positive effect. We detected no impact of area, land cover diversity, trap‐scale productivity, or tree density. While phylogenetic relationships among genera had little influence, congeners tended to respond similarly. The hierarchical model, trained on data from the first mountain range, predicted the trends on the second mountain range better than multiple regression, reducing root mean squared error up to 65%. Compared to a more standard approach, this modeling framework better predicts patterns on a novel mountain range and provides a nuanced, detailed evaluation of ant communities at two spatial scales.