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141.
Polyana C Tizioto Jeremy F Taylor Jared E Decker Caio F Gromboni Mauricio A Mudadu Robert D Schnabel Luiz L Coutinho Gerson B Mour?o Priscila SN Oliveira Marcela M Souza James M Reecy Renata T Nassu Flavia A Bressani Patricia Tholon Tad S Sonstegard Mauricio M Alencar Rymer R Tullio Ana RA Nogueira Luciana CA Regitano 《遗传、选种与进化》2015,47(1)
142.
Luís Eduardo Fernandes Rodrigues da Conceição Margarete Alice Fontes Saraiva Raphael Hermano Santos Diniz Juliana Oliveira Gustavo Dimas Barbosa Florencia Alvarez Lygia Fátima da Mata Correa Hygor Mezadri Mauricio Xavier Coutrim Robson José de Cássia Franco Afonso Candida Lucas Ieso Miranda Castro Rogelio Lopes Brandão 《Journal of industrial microbiology & biotechnology》2015,42(2):237-246
143.
José Alexandre Felizola Diniz Filho Fabricio Villalobos Luis Mauricio Bini 《Genetics and molecular biology》2015,38(3):396-400
Eigenfunction analyses have been widely used to model patterns of autocorrelation in time, space and phylogeny. In a phylogenetic context, Diniz-Filho et al. (1998) proposed what they called Phylogenetic Eigenvector Regression (PVR), in which pairwise phylogenetic distances among species are submitted to a Principal Coordinate Analysis, and eigenvectors are then used as explanatory variables in regression, correlation or ANOVAs. More recently, a new approach called Phylogenetic Eigenvector Mapping (PEM) was proposed, with the main advantage of explicitly incorporating a model-based warping in phylogenetic distance in which an Ornstein-Uhlenbeck (O-U) process is fitted to data before eigenvector extraction. Here we compared PVR and PEM in respect to estimated phylogenetic signal, correlated evolution under alternative evolutionary models and phylogenetic imputation, using simulated data. Despite similarity between the two approaches, PEM has a slightly higher prediction ability and is more general than the original PVR. Even so, in a conceptual sense, PEM may provide a technique in the best of both worlds, combining the flexibility of data-driven and empirical eigenfunction analyses and the sounding insights provided by evolutionary models well known in comparative analyses. 相似文献
144.
145.
Moltedo JM Abello M Gustavo S Javier C Delucis PG 《Indian pacing and electrophysiology journal》2011,11(4):126-128
An 18 month old 14 kg male with symptomatic Brugada syndrome underwent placement of an epicardial automatic implantable cardiac defibrillator using a single coil transvenous lead sutured to the anterolateral aspect of the left ventricle. 相似文献
146.
Doménech R Bocanegra R González-Muñiz R Gómez J Mateu MG Neira JL 《Biomacromolecules》2011,12(9):3252-3264
The C-terminal domain (CTD) of the capsid protein (CA) of HIV-1 participates both in the formation of CA hexamers and in the joining of hexamers through homodimerization to form the viral capsid. Intact CA and the CTD are able to homodimerize with similar affinity (~15 μM); CTD homodimerization involves mainly an α-helical region. We have designed peptides derived from that helix with predicted higher helical propensities than the wild-type sequence while keeping residues important for dimerization. These peptides showed a higher helicity than that of the wild-type peptide, although not as high as theoretically predicted, and proved to be able to self-associate with apparent affinities similar to that of the whole CTD. However, binding to CTD mainly occurs at the last helical region of the protein. Accordingly, most of those peptides are unable to inhibit CA polymerization in vitro. Therefore, there is a subtle tuning between monomer-monomer interactions important for CTD dimerization and the maximal helical content achieved by the wild-type sequence of the interface. 相似文献
147.
Viral genome segmentation can result from a trade-off between genetic content and particle stability
Ojosnegros S García-Arriaza J Escarmís C Manrubia SC Perales C Arias A Mateu MG Domingo E 《PLoS genetics》2011,7(3):e1001344
The evolutionary benefit of viral genome segmentation is a classical, yet unsolved question in evolutionary biology and RNA genetics. Theoretical studies anticipated that replication of shorter RNA segments could provide a replicative advantage over standard size genomes. However, this question has remained elusive to experimentalists because of the lack of a proper viral model system. Here we present a study with a stable segmented bipartite RNA virus and its ancestor non-segmented counterpart, in an identical genomic nucleotide sequence context. Results of RNA replication, protein expression, competition experiments, and inactivation of infectious particles point to a non-replicative trait, the particle stability, as the main driver of fitness gain of segmented genomes. Accordingly, measurements of the volume occupation of the genome inside viral capsids indicate that packaging shorter genomes involves a relaxation of the packaging density that is energetically favourable. The empirical observations are used to design a computational model that predicts the existence of a critical multiplicity of infection for domination of segmented over standard types. Our experiments suggest that viral segmented genomes may have arisen as a molecular solution for the trade-off between genome length and particle stability. Genome segmentation allows maximizing the genetic content without the detrimental effect in stability derived from incresing genome length. 相似文献
148.
Ronsein GE de Oliveira MC Medeiros MH Miyamoto S Di Mascio P 《Free radical research》2011,45(3):266-275
Cholesterol (Ch) can be oxidized by reactive oxygen species, forming oxidized products such as Ch hydroperoxides (ChOOH). These hydroperoxides can disseminate the peroxidative stress to other cell compartments. In this work, the ability of ChOOH to induce strand breaks and/or base modifications in a plasmid DNA model was evaluated. In addition, HPLC/MS/MS analyses were performed to investigate the formation of 8-oxo-7,8-dihydro-2'-deoxyguanosine (8-oxodGuo) after the incubation of 2'-deoxyguanosine (dGuo) with ChOOH and Cu(2+). In the presence of copper ions, ChOOH induced DNA strand breaks in time and concentration-dependent manners. Purine and pyrimidine base modifications were also observed, as assessed respectively by the treatment with Fpg and Endo III repair enzymes. The detection of 8-oxodGuo by HPLC/MS/MS is in agreement with the dGuo oxidation in plasmid DNA. ChOOH-derived DNA damage adds further support to the role of lipid peroxidation in inducing DNA modifications and mutation. 相似文献
149.
Nedeljka N. Rosic Mathieu Pernice Mauricio Rodriguez-Lanetty Ove Hoegh-Guldberg 《Marine biotechnology (New York, N.Y.)》2011,13(3):355-365
Unicellular photosynthetic algae (dinoflagellate) from the genus Symbiodinium live in mutualistic symbiosis with reef-building corals. Cultured Symbiodinium sp. (clade C) were exposed to a range of environmental stresses that included elevated temperatures (29°C and 32°C) under
high (100 μmol quanta m−2 s−1 Photosynthetic Active Radiation) and low (10 μmol quanta m−2 s−1) irradiances. Using real-time RT-PCR the stability of expression for the nine selected putative housekeeping genes (HKGs)
was tested. The most stable expression pattern was identified for cyclophilin and S-adenosyl methionine synthetase (SAM) followed by S4 ribosomal protein (Rp-S4), Calmodulin (Cal), and Cytochrome oxidase subunit 1 (Cox), respectively. Thermal stress alone resulted in the highest expression stability for Rp-S4 and SAM, with a minimum of two reference genes required for data normalization. For Symbiodinium exposed to both, light and thermal stresses, at least five reference genes were recommended by geNorm analysis. In parallel,
the expression of Hsp90 for Symbiodinium in culture and in symbiosis within coral host (Acropora millepora) was evaluated using the most stable HKGs. Our results revealed a drop in Hsp90 expression after an 18 h-period and a 24 h-period of exposure to elevated temperatures indicating the similar Hsp90 expression profile in symbiotic and non-symbiotic environments. This study provides the first list of the HKGs and will
provide a useful reference in future gene expression studies in symbiotic dinoflagellates. 相似文献
150.
Ulloa M Wang C Hutmacher RB Wright SD Davis RM Saski CA Roberts PA 《Molecular genetics and genomics : MGG》2011,286(1):21-36
Knowledge of the inheritance of disease resistance and genomic regions housing resistance (R) genes is essential to prevent
expanding pathogen threats such as Fusarium wilt [Fusarium oxysporum f.sp. vasinfectum (FOV) Atk. Sny & Hans] in cotton (Gossypium spp.). We conducted a comprehensive study combining conventional inheritance, genetic and quantitative trait loci (QTL) mapping,
QTL marker-sequence composition, and genome sequencing to examine the distribution, structure and organization of disease
R genes to race 1 of FOV in the cotton genome. Molecular markers were applied to F2 and recombinant inbred line (RIL) interspecific mapping populations from the crosses Pima-S7 (G. barbadense L.) × ‘Acala NemX’ (G. hirsutum L.) and Upland TM-1 (G. hirsutum) × Pima 3-79 (G. barbadense), respectively. Three greenhouse tests and one field test were used to obtain sequential estimates of severity index (DSI)
of leaves, and vascular stem and root staining (VRS). A single resistance gene model was observed for the F2 population based on inheritance of phenotypes. However, additional inheritance analyses and QTL mapping indicated gene interactions
and inheritance from nine cotton chromosomes, with major QTLs detected on five chromosomes [Fov1-C06, Fov1-C08, (Fov1-C11
1
and Fov1-C11
2)
, Fov1-C16 and Fov1-C19 loci], explaining 8–31% of the DSI or VRS variation. The Fov1-C16 QTL locus identified in the F2 and in the RIL populations had a significant role in conferring FOV race 1 resistance in different cotton backgrounds. Identified
molecular markers may have important potential for breeding effective FOV race 1 resistance into elite cultivars by marker-assisted
selection. Reconciliation between genetic and physical mapping of gene annotations from marker-DNA and new DNA sequences of
BAC clones tagged with the resistance-associated QTLs revealed defenses genes induced upon pathogen infection and gene regions
rich in disease-response elements, respectively. These offer candidate gene targets for Fusarium wilt resistance response
in cotton and other host plants. 相似文献