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61.
Structural and functional diversity among bacterial interspersed mosaic elements (BIMEs) 总被引:7,自引:0,他引:7
Sophie Bachellier William Saurin David Perrin Maurice Hofnung Eric Gilson† 《Molecular microbiology》1994,12(1):61-70
Palindromic units (PU or REP) were defined as 40-nucleotide DNA sequences which are highly repeated in the genome of several members of the Enterobacteriaceae. They were shown to be a constituent of the bacterial interspersed mosaic element (BIME), in which they are associated with other repetitive sequences. We report here that Escherichia coli PU sequences contain three motifs (Y, Z1 and Z2), leading to the definition of two BIME families. The BIME-1 family, highly conserved over 145 nucleotides, contains two PUs (motifs Y and Z1). The BIME-2 family contains a variable number of PUs (motifs Y and Z2). We present evidence, using band shift experiments, that each PU motif binds DNA gyrase with a different affinity. This suggests that the two families are functionally distinct. 相似文献
62.
Zoran G. Cerovic Maurice Bergher Yves Goulas Stephane Tosti Ismael Moya 《Photosynthesis research》1993,36(3):193-204
A newly developed nitrogen laser fluorimeter insensitive to actinic illumination was used to follow simultaneously the light induced changes in red and blue fluorescence of intact isolated spinach chloroplasts and leaf pieces. The recorded variable blue fluorescence was linked to a water soluble component of intact isolated chloroplasts, depended on Photosystem I, and was related to changes in carbon metabolism. From the comparison of changes in intact and broken chloroplasts and from fluorescence spectra under different conditions, it was concluded that the variation in NADPH was the major cause for the changes in blue fluorescence. This study opens a path towards continuous and non-destructive monitoring of NADPH redox state in chloroplasts and leaves.Abbreviations Chl
chlorophyll
- DHAP
dihydroxyacetone phosphate
- DLGA
DL-glyceraldehyde
- FNR
ferredoxin-NADP reductase
- FWHM
full width at half maximum
- LED
light emitting diodes
- OAA
oxaloacetate
- qN
non-photochemical quenching
- PGA
3-phosphoglycerate
- Pi
inorganic orthophosphate
- qP
photochemical quenching
- PPFD
photosynthetic photon flux density
- QA
primary quinone acceptor of Photosystem II
Preliminary results of this work were presented at the First Conference on the Physiology and Biochemistry of high Mountain Plants, 2–3 July 1992, Villar d'Arene, France. 相似文献
63.
At altitudes between 1300 m to 2100 m in the Etna massif (Sicily), an endemic species of theBetula genus,Betula aetnensis Rafin, grows in a well-defined microclimatical context. Aboveground biomass and nutrient content studies within one stand revealed no significant differences from the otherBetula species, normally found in colder more temperate climate regions.Throughout the studied sites, biomass production, nutrient cycling and various structural or physiological characteristics (leaf area index) varied very little.Other researches indicate that the originality ofBetula aetnensis lies more in the histological or anatomical characteristics of its water conducting system which enables the species to adapt to Mediterranean-climate summer droughts in the Etna massif.
Riassunto Sull'Etna, tra 1300 e 2100 m d'altitudine, in una zona microclimaticamente ben definita del versante nordorientale, si rinviene laBetula aetnensis Rafin.Dallo studio della fitomassa e della mineralomassa aerea del bosco di Monte Baracca, è emerso che non vi sono differenze notevoli con le altre specie indagate del genereBetula, più caratteristiche dei climi temperati e freddi.La produzione di biomassa, cosi come la gestione degli elementi nutritivi, è molto simile ai diversi popolamenti già indagati, cosi come certe caratteistiche strutturali e fisiologiche (leaf area index).L'originalità dellaBetula aetnensis è da ricercarsi nel vantaggio che ne ricava, a livello endogeno, sfruttando le caratteristiche istologiche ed anatomiche del suo apparato conduttore, che le consentono un efficace ed eccellente adattamento alle condizioni di siccità estive particolari del clima mediterraneo del vulcano.相似文献
64.
The temporal changes in extracellular enzyme activities in freshwater microbial biofilms were examined in two contrasting
river sites in North Wales over a 12 month period. Sites were a first order, unshaded oligotrophic upland stream (Nant Waen)
and a fourth order, mildly eutrophic river with riparian tree cover (River Clywedog). When algal populations were low, biofilms
of the more eutrophic site supported greater enzyme activities and higher population densities than the oligotrophic site.
Composition, concentration and origin of substrates available to the respective biofilm communities influenced extracellular
processing patterns. Reduction in algal populations depressed total and extracellular activities in biofilms from the first
order site, suggesting that biofilm communities here were maintained by in situ primary production. Biofilms from Nant Waen were often found to contain higher extracellular activities per cell than the
more eutrophic River Clywedog biofilms, which might represent the enhanced ability of an oligotrophic biofilm to accumulate
extracellular enzymes. In contrast, light and darkgrown River Clywedog biofilms were not enzymatically distinct, inferring
a less important role for biofilm phototrophs. Some evidence was found for increased reliance on allochthonous substrates
in the River Clywedog for biofilm maintenance. 相似文献
65.
We examined the energetic dependency of the biochemical and physiological responses of Thalassiosira pseudonana Hasle and Heimdal. Chaetoceros gracilis Schütt, Dunaliella tertiolecta Butcher, and Gymnodinium sanguineum Hirasaka to NH4+, NO3?, and urea by growing them at subsaturating and saturating photon flux (PF). At subsaturating PF, when energy was limiting, NO3? and NH4+ grown cells had similar growth rates and C and X quotas. Therefore, NO3? grown cells used up to 48% more energy than NH4+ grown cells to assimilate carbon and nitrogen. Based on our measurements of pigments, chlorophyll-a-specific in vivo absorption cross-section, and fluorescence-chlorophyll a?1, we suggest that NO3?, grown cells do not compensate for the greater energy requirements of NO3? reduction by trapping more light energy. At saturating PF, when energy is not limiting, the utilization of NO3?, compared to NH4+ resulted in lower growth rates and N quotas in Thalassiosira pseudonana and lower N quotas in Chaetoceros gracilis, suggesting enzymatic rather than energetic limitations to growth. The utilization of urea compared to Nh4+ resulted in lower growth rates in Chaetoceros gracilis and Gymnodinium sanguineum (saturating PF) and in lower N quotas in all species tested at both subsaturating and saturating PF. The high C:N ratios observed in all urea-grown species suggest that nitrogen assimilation may be limited by urea uptake or deamination and that symptoms of N limitation in microalgae may be induced by the nature of the N source in addition to the N supply rate. Our results provide new eridence that the maximum growth rates of microalgae may be limited by enzymatic processes associated with the assimilation of NO3?, or urea. 相似文献
66.
67.
Yolande Bertin Jean-Pierre Girardeau Maurice Der Vartanian Christine Martin 《FEMS microbiology letters》1993,108(1):59-67
Abstract The putative chaperone-like protein ClpE, required for biogenesis of the Escherichia coli capsule-like antigen CS31A, was compared with ten known periplasmic chaperones from E. coli, Klebsiella pneumoniae, Bordetella pertussis, Haemophilus influenzae and Yersinia pestis . The amino acid sequence alignment was superimposed onto the three-dimensional structure of the PapD chaperone of uropathogenic E. coli , and amino acid residues involved in maintaining the structure integrity of the suggested binding site were found identical in most of the 11 chaperones. Construction of a phylogenetic tree to investigate the relationship within the chaperone family has revealed interesting degrees of relatedness between the different proteins. 相似文献
68.
A number of observations in the Escherichia coli and Salmonella typhimurium literature could be explained by the hypothesis that a particular purine ribonucleotide precursor can be converted to the corresponding deoxyribonucleotide triphosphate, thereby becoming a base-analogue mutagen. The metabolite in question, AICAR (5-amino-4-carboxamide imidazole riboside 5′-phosphate), is also a by-product of histidine biosynthesis, and its (ribo)triphosphate derivative, ZTP, has been detected in E. coli. We constructed E. coli tester strains that had either a normal AICAR pool (pur + his + strains cultivated without purines or histidine) or no AICAR pool (purF hisG mutant strains, lacking the first enzyme of each pathway and cultivated in the presence of adenine and histidine). Using a set of lacZ mutations, each of which can revert to Lac+ only by a specific substitution mutation, we found that no base substitution event occurs at a higher frequency in the presence of an AICAR pool. We conclude that the normal AICAR pool in E. coli is not a significant source of spontaneous base substitution mutagenesis. 相似文献
69.
70.
Carlos Soccol José Rodríguez León Bernard Marin Sevastianos Roussos Maurice Raimbault 《Biotechnology Techniques》1993,7(8):563-568
Summary Growth kinetics of Rhizopus arrhizus MUCL 28168 were determined for different treatments of cassava during solid state fermentation. The best case gave a specific growth rate () of 0.24 h-1, a yield calculated on a basis that oxygen consumption (Yx/o) was 2.9 g biomass. g-1 O2 consumed and the maintenance coefficient (m) was 0.004 g O2 consumed. g-1 biomass. h-1. 相似文献