Time energy budgets and food use of Atlantic brant across their wintering range

We conducted extensive behavioral and food sampling of Atlantic brant (Branta bernicla hrota) across their winter range and used time–activity budgets for brant to determine daily energy expenditure (DEE). Sampling occurred 1 December–31 May 2006–2008 in 11,225-km² sites between Rhode Island and Virginia containing important estuarine and upland habitat. To calculate DEE we used instantaneous scan sampling to estimate time–activity budgets. We also determined foods eaten by brant and energy density of food plants. Last, we quantified body condition of brant, which differed among years, months, regions, and ages, and sexes. Overall DEE for brant was 1,530 ± 64 kJ/day. There was considerable variation in time–activity budgets among years, months, regions, habitat, tide, temperature, and time-of-day, but we detected no significant difference in DEE of brant between years or among regions. However, DEE in January (2,018 ± 173 kJ/day) was nearly double the DEE of brant in May (1,048 ± 137 kJ/day). Brant spent their time feeding (32.3%), swimming (26.2%), resting (16.2%), and flying (14.5%). The percent of brant foreguts sampled contained macroalgae (53%) eelgrass (Zostera marina; 18%), salt marsh cordgrass (Spartina alterniflora; 17%), and terrestrial grass (Poa. sp.) and clover (Trifollium sp.; 9%). Energy density differed by vegetation type: macroalgae (12.6 ± 0.1 kJ/g), eelgrass (14.1 ± 0.1 kJ/g), new-growth salt marsh cordgrass (16.9 ± 0.2 kJ/g), and terrestrial grass and clover (17.7 ± 0.1 kJ/g). Atlantic brant exhibited behavioral plasticity thereby allowing modification of daily activity budgets to meet seasonally varying energetic requirements associated with wintering and spring staging. Recognizing a variable DEE can be used along with eventual estimates of food biomass and total metabolizable energy on the landscape to calculate carrying capacity (goose use days) on state, region, or range-wide scales. © 2011 The Wildlife Society.     

Role of saprophagous fly biodiversity in ecological processes and urban ecosystem services

1. Direct consumption of organic matter by the saprophagous larvae provides the ecosystem with a fundamental service by recycling nutrients and reducing exposure to decomposing matter. The present study aimed to assess the functional role of saprophagous flies in the mass loss of different types of decomposing organic matter. 2. Two types of common urban waste were used to measure the role of flies in reducing organic matter: chicken viscera (chicken) and a mixture of flour and uncooked eggs (flour and eggs), representing leftover food. Ten traps baited with each substrate, under field conditions, allowed fly access (exposed to flies) and three traps from each substrate did not (unexposed controls); adult flies entering the traps or emerging from the substrates and substrate mass loss were recorded. 3. Species from Calliphoridae, Sarcophagidae, Muscidae, and Fanniidae families were collected mainly in traps baited with chicken, with Phoridae being the most abundant in traps with flour and eggs as bait. A significantly richer (P < 0.05) assemblage of fly species accessed the traps baited with chicken viscera (21 species) compared with those emerging (11 species), whereas similar numbers of species accessed (n = 5) or emerged (n = 1) from traps baited with flour and eggs (average richness accessing 7.97, emerging 2.83). Chicken substrate mass loss and species richness were positively related (r = 0.56, P = 0.001). In traps where richness was larger than 10 species, the substrates were reduced by more than 85% of their initial weight compared with unexposed controls, which lost 30%. Substrate mass loss significantly increased with the abundance of flies (r = 0.73, P < 0.0001). 4. The results of the present study support the functional role of saprophagous species diversity on the decomposition rates of organic matter, reinforcing the negative consequences of loss or gain of species in modified landscapes and for ecosystem function.     

Role of the soluble pattern recognition receptor PTX3 in vascular biology

Pentraxins act as soluble pattern recognition receptors with a wide range of functions in various pathophysiological conditions. The long-pentraxin PTX3 shares the C-terminal pentraxin-domain with short-pentraxins C-reactive protein and serum amyloid P component and possesses an unique N-terminal domain. These structural features suggest that PTX3 may have both overlapping and distinct biological/ligand recognition properties when compared to short-pentraxins. PTX3 serves as a mechanism of amplification of inflammation and innate immunity. Indeed, vessel wall elements produce high amounts of PTX3 during inflammation and the levels of circulating PTX3 increase in several pathological conditions affecting the cardiovascular system. PTX3 exists as a free or extracellular matrix-associated molecule and it binds the complement fraction C1q. PTX3 binds also apoptotic cells and selected pathogens, playing a role in innate immunity processes. In endothelial cells and macrophages, PTX3 upregulates tissue factor expression, suggesting its action as a regulator of endothelium during thrombogenesis and ischaemic vascular disease. Finally, PTX3 binds the angiogenic fibroblast growth factor-2, thus inhibiting its biological activity. Taken together, these properties point to a role for PTX3 during vascular damage, angiogenesis, atherosclerosis, and restenosis.     

Fluorescence decay of dyed protozoa: differences between stressed and non‐stressed cysts

Several series of tests have shown that fresh, intact samples of Giardia duodenalis and Cryptosporidium parvum (oo)cysts are not marked by fluorescent probes such as carboxyfluorcein‐succinimidyl‐diacetate‐ester (CFDA‐SE), C12‐resazurin and SYTOX® Green, probably because of their robust cell walls. These dyes fail to indicate the viability of such protozoa and allow negative responses to be recorded from living and infectious samples. Cryptosporidium parvum showed stronger isolation from chemicals, with living oocysts remaining unstained by the probe for up to 90 days after extraction. However, in further fluorescence decay (FD) experiments run with G. duodenalis samples stained using CFDA‐SE (comprising living, non‐stressed but aged cysts, heat‐killed samples and UV‐C‐stressed samples) each showed a different FD decay profile, here studied in seven series of tests of five replicates each. The FD profiles were fitted by double‐exponential decay kinetics, with the decay constant k₂ being five times higher than k₁. This FD procedure is fast and can be easily reproduced in 10 steps, taking ~ 1 h of laboratory work for already purified samples. Copyright © 2015 John Wiley & Sons, Ltd.     

MDM2 protein-mediated ubiquitination of numb protein: identification of a second physiological substrate of MDM2 that employs a dual-site docking mechanism

The E3 ubiquitin ligase, MDM2, uses a dual-site mechanism to ubiquitinate and degrade the tumor suppressor protein p53, involving interactions with the N-terminal hydrophobic pocket and the acidic domain of MDM2. The results presented here demonstrate that MDM2 also uses this same dual-site mechanism to bind to the cell fate determinant NUMB with both the N-terminal hydrophobic pocket and the acidic domain of MDM2 also involved in forming the interaction with NUMB. Furthermore, the acidic domain interactions are crucial for MDM2-mediated ubiquitination of NUMB. Contrary to p53, where two separate domains form the interface with MDM2, only one region within the phosphotyrosine binding domain of NUMB (amino acids 113-148) mediates binding to both these regions of MDM2. By binding to both domains on MDM2, NUMB disrupts the MDM2-p53 complex and MDM2-catalyzed ubiquitination of p53. Therefore, we have identified the mechanism NUMB uses to regulate the steady-state levels of the p53 in cells. By targeting the acidic domain of MDM2 using acid domain-binding ligands we can overcome MDM2-mediated ubiquitination and degradation of NUMB impacting on the stabilization of p53 in cells. Furthermore, delivery of MDM2 acid domain-binding ligands to cancer cells promotes p53-dependent growth arrest and the induction of apoptosis. This highlights the dual-site mechanism of MDM2 on another physiological substrate and identifies the acid domain as well as N terminus as a potential target for small molecules that inhibit MDM2.     

The PhoP/PhoQ system and its role in Serratia marcescens pathogenesis

Serratia marcescens is able to invade, persist, and multiply inside nonphagocytic cells, residing in nonacidic, nondegradative, autophagosome-like vacuoles. In this work, we have examined the physiological role of the PhoP/PhoQ system and its function in the control of critical virulence phenotypes in S. marcescens. We have demonstrated the involvement of the PhoP/PhoQ system in the adaptation of this bacterium to growth on scarce environmental Mg(2+), at acidic pH, and in the presence of polymyxin B. We have also shown that these environmental conditions constitute signals that activate the PhoP/PhoQ system. We have found that the two S. marcescens mgtE orthologs present a conserved PhoP-binding motif and demonstrated that mgtE1 expression is PhoP dependent, reinforcing the importance of PhoP control in magnesium homeostasis. Finally, we have demonstrated that phoP expression is activated intracellularly and that a phoP mutant strain is defective in survival inside epithelial cells. We have shown that the Serratia PhoP/PhoQ system is involved in prevention of the delivery to degradative/acidic compartments.