S-nitrosothiol and nitric oxide reactivity at β-diketiminato zinc thiolates

The β-diketiminato zinc halide [Me₂NN]ZnCl₂Li(THF)₃ (1) is prepared in 51% isolated yield by addition of the lithium β-diketiminate Li[Me₂NN] to ZnCl₂ in THF. Reaction of 1 with 2 equiv. of the thallium thiolate TlSCy provides {[Me₂NN]Zn(μ-SCy)₂Tl}₂ (2), a TlSCy adduct of [Me₂NN]ZnSCy, as colorless crystals in 51% yield. Reaction of 1 with 1 equiv. TlSR provides the dinuclear {[Me₂NN]Zn(μ-SR)}₂ (R = Cy (3), ^tBu (4)) which possess unsymmetrically bridging thiolate ligands with pairs of dissimilar Zn-S distances in the solid state (2.350(3) and 2.417(3) Å for 3; 2.312(1) and 2.415(1) Å for 4). Reaction of 1 with LiSCPh₃ results in the mononuclear zinc thiolates [Me₂NN]ZnSCPh₃(THF) (5) and [Me₂NN]ZnSCPh₃ (6) with shorter, but similar Zn-SR distances of 2.225(2) and 2.214(1) Å. Variable temperature ¹H NMR studies of 3 and 4 in CDCl₃ suggest that the aliphatic thiolates exist predominately as monomeric species in solution near room temperature, though at −50 °C two different β-diketiminato species are observed for 3. Thiolate exchange among 3, 4, and 6 also takes place on the NMR timescale near room temperature. Both 4 and 6 undergo transnitrosylation with CySNO in CDCl₃ to give {[Me₂NN]ZnSCy}₂ (3) and the corresponding S-nitrosothiol ^tBuSNO or Ph₃CSNO. Nitric oxide does not react with 4 or 6 under anaerobic conditions, but in the presence of O₂, NO cleaves the zinc-thiolate bond of 4 to rapidly give ^tBuSNO. Similarly, anaerobic NO₂ reacts with 4 to give ^tBuSNO providing insight into the active nitrogen oxide species capable of cleaving Zn-SR bonds.     

Infection of human urethral epithelium with Neisseria gonorrhoeae elicits an upregulation of host anti-apoptotic factors and protects cells from staurosporine-induced apoptosis

In order to better understand the host response to an infection with Neisseria gonorrhoeae, microarray technology was used to analyse the gene expression profile between uninfected and infected human urethral epithelium. The anti-apoptotic genes bfl-1, cox-2 and c-IAP-2 were identified to be upregulated approximately eight-, four- or twofold, respectively, following infection. Subsequent assays including RT-PCR, real time RT-PCR and RNase protection confirmed the increased expression of these apoptotic regulators, and identified that a fourth anti-apoptotic factor, mcl-1, is also upregulated. RT-PCR and RNase protection also showed that key pro-apoptotic factors including bax, bad and bak do not change in expression. Furthermore, our studies demonstrated that infection with the gonococcus partially protects urethral epithelium from apoptosis induced by the protein kinase inhibitor, staurosporine (STS). This work shows that following infection with Neisseria gonorrhoeae, several host anti-apoptotic factors are upregulated. In addition, a gonococcal infection protects host cells from subsequent STS-induced death. The regulation of host cell death by the gonococcus may represent a mechanism employed by this pathogen to survive and proliferate in host epithelium.     

Directed In Vitro Myogenesis of Human Embryonic Stem Cells and Their In Vivo Engraftment

Development of human embryonic stem cell (hESC)-based therapy requires derivation of in vitro expandable cell populations that can readily differentiate to specified cell types and engraft upon transplantation. Here, we report that hESCs can differentiate into skeletal muscle cells without genetic manipulation. This is achieved through the isolation of cells expressing a mesodermal marker, platelet-derived growth factor receptor-α (PDGFRA), following embryoid body (EB) formation. The ESC-derived cells differentiated into myoblasts in vitro as evident by upregulation of various myogenic genes, irrespective of the presence of serum in the medium. This result is further corroborated by the presence of sarcomeric myosin and desmin, markers for terminally differentiated cells. When transplanted in vivo, these pre-myogenically committed cells were viable in tibialis anterior muscles 14 days post-implantation. These hESC-derived cells, which readily undergo myogenic differentiation in culture medium containing serum, could be a viable cell source for skeletal muscle repair and tissue engineering to ameliorate various muscle wasting diseases.     

Fine‐scale habitat use in Indo‐Pacific humpback dolphins,Sousa chinensis,may be more influenced by fish rather than vessels in the Pearl River Estuary,China

Shifts in habitat use and distribution patterns in dolphins are often concerns that can result from habitat degradation. We investigated how potential changes to a habitat from human activity may alter dolphin distributions within Lingding Bay in the Pearl River Estuary, China, by studying the relationship between fish choruses, vessel presence and Indo‐Pacific humpback dolphin (Sousa chinensis) detection rates. Analyses revealed temporal and spatial variation within fish choruses, vessel presence and dolphin detection rates. After accounting for any temporal autocorrelation, correlations between fish choruses and dolphin detection rates were also found; however, no relationship between fish choruses and vessel presence or dolphin detection rates and vessel presence were observed. Furthermore, fewer dolphins were detected at sites where fish activity was less intense. Thus fish activity, rather than vessels, may be a key factor influencing the distribution of the dolphins within the estuary. These findings emphasize the risk of potential shifts in habitat use for Indo‐Pacific humpback dolphins due to detrimental changes to prey availability and dolphin feeding grounds from human activity, such as overfishing and coastal developments, within the estuary. This is a critical conservation issue for this dolphin population that is facing intense anthropogenic pressure.     

Extreme challenges and advances in archaeal proteomics

Archaea display amazing physiological properties that are of interest to understand at the molecular level including the ability to thrive at extreme environmental conditions, the presence of novel metabolic pathways (e.g. methanogenesis, methylaspartate cycle) and the use of eukaryotic-like protein machineries for basic cellular functions. Coupling traditional genetic and biochemical approaches with advanced technologies, such as genomics and proteomics, provides an avenue for scientists to discover new aspects related to the molecular physiology of archaea. This review emphasizes the unusual properties of archaeal proteomes and how high-throughput and specialized mass spectrometry-based proteomic studies have provided insight into the molecular properties of archaeal cells.     

GO‐At : in silico prediction of gene function in Arabidopsis thaliana by combining heterogeneous data

Despite recent advances, accurate gene function prediction remains an elusive goal, with very few methods directly applicable to the plant Arabidopsis thaliana. In this study, we present GO‐At (gene ontology prediction in A. thaliana), a method that combines five data types (co‐expression, sequence, phylogenetic profile, interaction and gene neighbourhood) to predict gene function in Arabidopsis. Using a simple, yet powerful two‐step approach, GO‐At first generates a list of genes ranked in descending order of probability of functional association with the query gene. Next, a prediction score is automatically assigned to each function in this list based on the assumption that functions appearing most frequently at the top of the list are most likely to represent the function of the query gene. In this way, the second step provides an effective alternative to simply taking the ‘best hit’ from the first list, and achieves success rates of up to 79%. GO‐At is applicable across all three GO categories: molecular function, biological process and cellular component, and can assign functions at multiple levels of annotation detail. Furthermore, we demonstrate GO‐At’s ability to predict functions of uncharacterized genes by identifying ten putative golgins/Golgi‐associated proteins amongst 8219 genes of previously unknown cellular component and present independent evidence to support our predictions. A web‐based implementation of GO‐At ( http://www.bioinformatics.leeds.ac.uk/goat ) is available, providing a unique resource for plant researchers to make predictions for uncharacterized genes and predict novel functions in Arabidopsis.     

Fluoxetine potentiates the effects of corticotropin-releasing factor on locomotor activity and serotonergic systems in the roughskin newt, Taricha granulosa

The anxiety- and stress-related neuropeptide corticotropin-releasing factor (CRF) elicits behavioral changes in vertebrates including increases in behavioral arousal and locomotor activity. Intracerebroventricular injections of CRF in an amphibian, the roughskin newt (Taricha granulosa), induces rapid increases in locomotor activity in both intact and hypophysectomized animals. We hypothesized that this CRF-induced increase in locomotor activity involves a central effect of CRF on serotonergic neurons, based on known stimulatory actions of serotonin (5-hydroxytryptamine, 5-HT) on spinal motor neurons and the central pattern generator for locomotor activity in vertebrates. In Experiment 1, we found that neither intracerebroventricular injections of low doses of CRF (25 ng) nor the selective serotonin reuptake inhibitor fluoxetine (10, 100 ng), by themselves, altered locomotor activity. In contrast, newts treated concurrently with CRF and fluoxetine responded with marked increases in locomotor activity. In Experiment 2, we found that increases in locomotor activity following co-administration of CRF (25 ng) and fluoxetine (100 ng) were associated with decreased 5-HT concentrations in a number of forebrain structures involved in regulation of emotional behavior and emotional states, including the ventral striatum, amygdala pars lateralis, and dorsal hypothalamus, measured 37 min after treatment. These results are consistent with the hypothesis that CRF stimulates locomotor activity through activation of serotonergic systems.     

Pink eggs and snails: field oviposition patterns of an invasive snail, Pomacea insularum, indicate a preference for an invasive macrophyte

Oviposition of non-calcareous or thinly shelled eggs represents an important life stage of many insects, amphibians, and several gastropods. A recently identified invasive species of apple snail, Pomacea insularum, exhibits alarming invasive characteristics of high reproductive rates and generalist consumption patterns. This snail takes the opposite approach to egg laying compared to most aquatic insects as adult snails crawl out of the water to place clutches on emergent, or terrestrial, substrates. As fecundity best indicates invasive potential for mollusks, control or management efforts need to understand reproductive behavior in P. insularum to predict, and hopefully impede, its spread throughout the Gulf Coast of the United States. Specific characteristics of wetlands and shallow lakes may facilitate the invasion process of P. insularum by providing females with conditions that permit successful oviposition. In order to investigate this possibility, we studied P. insularum oviposition behavior in an invasive population at two times during the reproductive season in Texas, USA. Based on a subsequent survey (August 2009), plants comprised 78% of the available habitat. Wild taro (Colocasia esculenta) and alligator weed (Alternanthera philoxeroides) represented 48 and 43% of that proportion, respectively. During 2008–2009, no new concrete or metal structures appeared in our sampling reach and consistent amounts of plant stands and woody debris remained dominant. Given this distribution, P. insularum laid disproportionately more clutches on wild taro compared to its availability and less on alligator weed and bulrush (Schoenoplectus californicus) than expected. Owing to limited metal and concrete substrates, we found a higher proportion of clutches on these artificial substrates than expected in both May and August 2008. However, artificial substrates comprised less than 2% of available substrates in the bayou. Our results suggest that wetlands and shallow lakes surrounded by large emergent macrophytes, particularly wild taro, likely provide ideal oviposition sites for P. insularum, promote egg supply, and possibly facilitate invasion into new aquatic ecosystems.