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Genome‐wide signature of local adaptation linked to variable CpG methylation in oak populations
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Alexander Platt Paul F. Gugger Matteo Pellegrini Victoria L. Sork 《Molecular ecology》2015,24(15):3823-3830
It has long been known that adaptive evolution can occur through genetic mutations in DNA sequence, but it is unclear whether adaptive evolution can occur through analogous epigenetic mechanisms, such as through DNA methylation. If epigenetic variation contributes directly to evolution, species under threat of disease, invasive competition, climate change or other stresses would have greater stores of variation from which to draw. We looked for evidence of natural selection acting on variably methylated DNA sites using population genomic analysis across three climatologically distinct populations of valley oaks. We found patterns of genetic and epigenetic differentiations that indicate local adaptation is operating on large portions of the oak genome. While CHG methyl polymorphisms are not playing a significant role and would make poor targets for natural selection, our findings suggest that CpG methyl polymorphisms as a whole are involved in local adaptation, either directly or through linkage to regions under selection. 相似文献
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Saravanabhavan Thangavel Matteo Berti Maryna Levikova Cosimo Pinto Shivasankari Gomathinayagam Marko Vujanovic Ralph Zellweger Hayley Moore Eu Han Lee Eric A. Hendrickson Petr Cejka Sheila Stewart Massimo Lopes Alessandro Vindigni 《The Journal of cell biology》2015,208(5):545-562
Accurate processing of stalled or damaged DNA replication forks is paramount to genomic integrity and recent work points to replication fork reversal and restart as a central mechanism to ensuring high-fidelity DNA replication. Here, we identify a novel DNA2- and WRN-dependent mechanism of reversed replication fork processing and restart after prolonged genotoxic stress. The human DNA2 nuclease and WRN ATPase activities functionally interact to degrade reversed replication forks with a 5′-to-3′ polarity and promote replication restart, thus preventing aberrant processing of unresolved replication intermediates. Unexpectedly, EXO1, MRE11, and CtIP are not involved in the same mechanism of reversed fork processing, whereas human RECQ1 limits DNA2 activity by preventing extensive nascent strand degradation. RAD51 depletion antagonizes this mechanism, presumably by preventing reversed fork formation. These studies define a new mechanism for maintaining genome integrity tightly controlled by specific nucleolytic activities and central homologous recombination factors. 相似文献
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Higher biodiversity is required to sustain multiple ecosystem processes across temperature regimes
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Daniel M. Perkins R. A. Bailey Matteo Dossena Lars Gamfeldt Julia Reiss Mark Trimmer Guy Woodward 《Global Change Biology》2015,21(1):396-406
Biodiversity loss is occurring rapidly worldwide, yet it is uncertain whether few or many species are required to sustain ecosystem functioning in the face of environmental change. The importance of biodiversity might be enhanced when multiple ecosystem processes (termed multifunctionality) and environmental contexts are considered, yet no studies have quantified this explicitly to date. We measured five key processes and their combined multifunctionality at three temperatures (5, 10 and 15 °C) in freshwater aquaria containing different animal assemblages (1–4 benthic macroinvertebrate species). For single processes, biodiversity effects were weak and were best predicted by additive‐based models, i.e. polyculture performances represented the sum of their monoculture parts. There were, however, significant effects of biodiversity on multifunctionality at the low and the high (but not the intermediate) temperature. Variation in the contribution of species to processes across temperatures meant that greater biodiversity was required to sustain multifunctionality across different temperatures than was the case for single processes. This suggests that previous studies might have underestimated the importance of biodiversity in sustaining ecosystem functioning in a changing environment. 相似文献
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Mona-Rita Yacoub Matteo Trimarchi George Cremona Sara Dal Farra Giuseppe Alvise Ramirez Valentina Canti Emanuel Della Torre Mattia Baldini Patrizia Pignatti Mario Bussi Maria Grazia Sabbadini Angelo A Manfredi Giselda Colombo 《Clinical and molecular allergy : CMA》2015,13(1)