A mouse to human search for plasma proteome changes associated with pancreatic tumor development

Background

The complexity and heterogeneity of the human plasma proteome have presented significant challenges in the identification of protein changes associated with tumor development. Refined genetically engineered mouse (GEM) models of human cancer have been shown to faithfully recapitulate the molecular, biological, and clinical features of human disease. Here, we sought to exploit the merits of a well-characterized GEM model of pancreatic cancer to determine whether proteomics technologies allow identification of protein changes associated with tumor development and whether such changes are relevant to human pancreatic cancer.

Methods and Findings

Plasma was sampled from mice at early and advanced stages of tumor development and from matched controls. Using a proteomic approach based on extensive protein fractionation, we confidently identified 1,442 proteins that were distributed across seven orders of magnitude of abundance in plasma. Analysis of proteins chosen on the basis of increased levels in plasma from tumor-bearing mice and corroborating protein or RNA expression in tissue documented concordance in the blood from 30 newly diagnosed patients with pancreatic cancer relative to 30 control specimens. A panel of five proteins selected on the basis of their increased level at an early stage of tumor development in the mouse was tested in a blinded study in 26 humans from the CARET (Carotene and Retinol Efficacy Trial) cohort. The panel discriminated pancreatic cancer cases from matched controls in blood specimens obtained between 7 and 13 mo prior to the development of symptoms and clinical diagnosis of pancreatic cancer.

Conclusions

Our findings indicate that GEM models of cancer, in combination with in-depth proteomic analysis, provide a useful strategy to identify candidate markers applicable to human cancer with potential utility for early detection.     

哺乳动物阴茎骨长度与延长性插入模式之间存在正相关的关系

阴茎骨长度增加的进化 ,部分原因与交配模式有关 ,后者涉及到延长性插入持续时间。但是 ,对于北美的食肉动物来说 ,这个假说一直有争议。为了检验这个假说 ,我们收集了来自食肉动物、蝙蝠和灵长类的 1 4 4个属 31 5种哺乳动物阴茎骨长度和体重的数据 ,除了阴茎骨长度和体重以外 ,对已知的 39个属的插入持续时间进行了线形多次回归分析。结果表明 :阴茎骨长度与插入持续时间之间存在极显著的正相关关系 (r2 =0 6 5 ,F=4 0 4 8,P <0 0 0 0 1 )。然后 ,使用了独立对比的比较分析以控制数据系统发育的偏差 ,在物种水平上对数据进行了分析 ,结果证实 :阴茎骨长度与插入持续时间之间有显著的相关关系 (r2 =0 6 9,F =34 2 3,P <0 0 0 1 )。本研究支持阴茎骨长度进化的延长性插入假说     

Food restriction and simulated microgravity: effects on bone and serum leptin.

Leptin is responsible for linking energy metabolism to bone mass. Because astronauts are commonly in negative energy balance during spaceflight, this study was designed to assess individual and combined effects of food restriction and simulated microgravity on bone mass and serum leptin. Six-month-old male Sprague-Dawley rats were randomly assigned to four groups (n = 12 each): two hindlimb-unloading (HU) groups fed 100% (HU100) and 70% (HU70) and two cage-activity control (CC) groups fed 100% (CC100) and 70% (CC70) of their baseline food requirement. After 28 days, CC100 rats gained body weight, whereas all other groups lost body weight; this loss was greater in HU70 than in CC70 and HU100 rats. Serum leptin decreased in CC70 and HU100 (-60% and -27%, respectively) and was not detectable in HU70 animals. Percent osteoid surface in CC70 and HU100 was lower than that of CC100 (7.80%, 8.60% vs. 10.70%, respectively), and this decrease was more pronounced in HU70 animals (4.38%). Mineral apposition rate of CC70, HU100, and HU70 rats was lower than that of CC100 (1.5, 1.6, and 1.5 vs. 2.1 mum/day, respectively). Bone formation rate of CC70, HU100, and HU70 rats was lower than that of CC100 (13.4, 13.1, and 12.2 vs. 40.8 mm(3).mm(-2).day(-1), respectively). The change in bone formation rate was correlated with the change in serum leptin value over 28 days (r(2) = 0.69, P = 0.0007). We conclude that moderate caloric restriction may cause bone loss at susceptible bone sites to a similar degree as does the unloading effect of microgravity; serum leptin may be an important endocrine regulator contributing to this change in skeletal integrity.     

Carbon Dioxide Exchange Between an Old-growth Forest and the Atmosphere

Eddy-covariance and biometeorological methods show significant net annual carbon uptake in an old-growth Douglas-fir forest in southwestern Washington, USA. These results contrast with previous assumptions that old-growth forest ecosystems are in carbon equilibrium. The basis for differences between conventional biomass-based carbon sequestration estimates and the biometeorologic estimates are discussed. Annual net ecosystem exchange was comparable to younger ecosystems at the same latitude, as quantified in the AmeriFlux program. Net ecosystem carbon uptake was significantly correlated with photosynthetically active radiation and air temperature, as well as soil moisture and precipitation. Optimum ecosystem photosynthesis occurred at relatively cool temperatures (5°–10°C). Understory and soil carbon exchange always represented a source of carbon to the atmosphere, with a strong seasonal cycle in source strength. Understory and soil carbon exchange showed a Q₁₀ temperature dependence and represented a substantial portion of the ecosystem carbon budget. The period of main carbon uptake and the period of soil and ecosystem respiration are out of phase, however, and driven by different climatic boundary conditions. The period of strongest ecosystem carbon uptake coincides with the lowest observed values of soil and ecosystem respiration. Despite the substantial contribution of soil, the overall strength of the photosynthetic sink resulted in the net annual uptake. The net uptake estimates here included two correction methods, one for advection and the other for low levels of turbulence.     

Sniffing behavior of mice during performance in odor-guided tasks

Sniffing, a rhythmic inhalation and exhalation of air through the nose, is a behavior thought to play a critical role in shaping how odor information is represented and processed by the nervous system. Although the mouse has become a prominent model for studying olfaction, little is known about sniffing behavior in mice. Here, we characterized mouse sniffing behavior by measuring intranasal pressure transients in behaving mice. Sniffing was monitored during unstructured exploratory behavior and during performance of 3 commonly used olfactory paradigms: a habituation/dishabituation task, a sand digging-based discrimination task, and a nose poke-based discrimination task. We found that respiration frequencies in quiescent mice ranged from 3 to 5 Hz--higher than that reported for rats. During exploration, sniff frequency increased up to approximately 12 Hz and was highly dynamic, with rapid changes in frequency, amplitude, and waveform. Sniffing behavior varied strongly between tasks as well as for different behavioral epochs of each task. For example, mice performing the digging-based task showed little increase in sniff frequency prior to digging, whereas mice performing a nose poke-based task showed robust increases. Mice showed large increases in sniff frequency prior to reward delivery in all tasks. Mice also showed increases in sniff frequency when nose poking in a nonodor-guided task. These results show that mouse sniffing behavior is highly dynamic, varies with behavioral context, and is strongly modulated by olfactory as well as nonolfactory events.     

What Insights Can Baboon Feeding Ecology Provide for Early Hominin Niche Differentiation?

Several authors have proposed that papionin baboons provide appropriate analogs for early hominin niche differentiation. Savanna-dwelling baboons and australopiths both radiated around the same time after Neogene expansion of C₄ grasslands, likely experiencing similar environmental changes and faced with solving similar ecological problems. We explore the insights baboons may provide into dietary ecology of savanna-occupying hominins. We compare dietary information from stable isotope data for feces, hair, and tooth dentine collagen of modern chacma baboons (Papio ursinus) with dietary data for Plio-Pleistocene papionins and hominins from South African savannas. Results confirm that, like the australopiths, baboons consume substantial amounts of C₄ food sources. However, the magnitude of inter- and intraindividual variation in baboon diets across different seasons and habitats is less than that from specimens of Australopithecus africanus and Paranthropus robustus analyzed to date. Hominins also consumed greater amounts of C₄ resources. Thus, though the data demonstrate that the radiation of both primate groups was closely linked with the spread of C₄ grasslands, hominins were even more extreme ecological generalists than baboons were. The absence of a fixed-diet in papionins implies that it was unlikely that the more ecologically flexible hominins evolved specializations for any one food type, an interpretation consistent with recent carbon isotope, dental microwear, and ecomorphological studies. We propose that researchers place less emphasis on resolving the foods that were most important for hominin differentiation; instead, future research should focus on questions related to ecological generalism.     

Particle-by-particle quantification of protein adsorption onto poly(ethylene glycol) grafted surfaces

The use and advantage of flow cytometry as a particle-by-particle, low sampling volume, high-throughput screening technique for quantitatively examining the non-specific adsorption of proteins onto surfaces is presented. The adsorption of three proteins: bovine serum albumin (BSA), immunoglobulin gamma (IgG) and protein G, incubated at room temperature for 2 h onto organosilica particles modified with poly(ethylene glycol) (PEG) of increasing MW (2000, 3400, 6000, 10,000 and 20,000 g mol(-1)) and grafted amounts (0.14-1.4 mg m(-2)) was investigated as a model system. Each protein exhibited Langmuir-like, high affinity monolayer limited adsorption on unmodified particles with the proteins reaching surface saturation at 1.8, 4.0 and 2.5 mg m(-2) for BSA, IgG and protein G, respectively. Protein adsorption on PEG-modified surfaces was found to decrease with increasing amounts of grafted polymer. PEG grafting amounts >0.6 mg m(-2) effectively prevented the adsorption of the larger two proteins (BSA and IgG) while a PEG grafting amount >1.3 mg m(-2) was required to prevent the adsorption of the smaller protein G.