Phylogenetics of the genus Scaevola (Goodeniaceae): implication for dispersal patterns across the Pacific Basin and colonization of the Hawaiian Islands

Scaevola, the only genus of Goodeniaceae that has extensively radiated outside of Australia, has dispersed throughout the Pacific Basin, with a few species reaching the tropical coastal areas of the Atlantic and Indian Oceans. Five Australian and most of the non-Australian species are placed in Scaevola section Scaevola based on their fleshy fruits, indeterminate inflorescences, and more arborescent habits. Analyses of ITS sequence data demonstrate that Scaevola is a monophyletic group if S. collaris is excluded and Diaspasis filifolia is included. The genus is Australian in origin, but there have been at least six separate dispersal events from Australia. Four of these dispersals each resulted in single extra-Australian species. The remaining two were followed by radiations that gave rise to large groups, each including one of the widespread strand species, S. taccada and S. plumieri. Remarkably, three of the six dispersals established species on the remote Hawaiian Archipelago, representing at present the largest number of colonizations by any flowering plant genus to these islands.     

Global gene expression analysis by combinatorial optimization

Generally, there is a trade-off between methods of gene expression analysis that are precise but labor-intensive, e.g. RT-PCR, and methods that scale up to global coverage but are not quite as quantitative, e.g. microarrays. In the present paper, we show how how a known method of gene expression profiling (K. Kato, Nucleic Acids Res. 23, 3685-3690 (1995)), which relies on a fairly small number of steps, can be turned into a global gene expression measurement by advanced data post-processing, with potentially little loss of accuracy. Post-processing here entails solving an ancillary combinatorial optimization problem. Validation is performed on in silico experiments generated from the FANTOM data base of full-length mouse cDNA. We present two variants of the method. One uses state-of-the-art commercial software for solving problems of this kind, the other a code developed by us specifically for this purpose, released in the public domain under GPL license.     

Dilute-acid hydrolysis for fermentation of the Bolivian straw material Paja Brava

Hydrolysis of the straw material Paja Brava, a sturdy grass characteristic for the high plains of Bolivia, was studied in order to find suitable conditions for hydrolysis of the hemicellulose and cellulose parts. Dried Paja Brava material was pre-steamed, impregnated with dilute sulfuric acid (0.5% or 1.0% by wt), and subsequently hydrolyzed in a reactor at temperatures between 170 and 230 degrees C for a reaction time between 3 and 10 min. The highest yield of xylose (indicating efficient hydrolysis of hemicellulose) were found at a temperature of 190 degrees C, and a reaction time of 5-10 min, whereas considerably higher temperatures (230 degrees C) were needed for hydrolysis of cellulose. Fermentability of hemicellulose hydrolyzates was tested using the xylose-fermenting yeast species Pichia stipitis, Candida shehatae and Pachysolen tannophilus. The fermentability of hydrolyzates decreased strongly for hydrolyzates produced at temperatures higher than 200 degrees C.     

Use of genome-scale microbial models for metabolic engineering

Metabolic engineering serves as an integrated approach to design new cell factories by providing rational design procedures and valuable mathematical and experimental tools. Mathematical models have an important role for phenotypic analysis, but can also be used for the design of optimal metabolic network structures. The major challenge for metabolic engineering in the post-genomic era is to broaden its design methodologies to incorporate genome-scale biological data. Genome-scale stoichiometric models of microorganisms represent a first step in this direction.     

No female mate choice in Mallee dragon lizards, Ctenophorus fordi

Aspects of sexual selection were studied in a sexually monomorphic Australian agamid lizard (Ctenophorus fordi), in particular with respect to the sensory exploitation hypothesis. In enclosure trials, females were offered the choice between large vs. small males and, in a different experiment, males with blue vs. normal head color. The rationale for these experiments was: firstly, to establish if females actively solicit copulations; secondly, if so, do females solicit copulations non-randomly with respect to male size (because large males may have access to food resources); thirdly, if male coloration is manipulated to match traits of congeneric, conspicuous and sexually dimorphic species, do females show preference for this novel trait (in accordance with the sensory exploitation hypothesis). The corresponding manipulations were also made in a free-living population where the distribution of females on the home ranges of color-manipulated males were monitored. Blue-headed males were accepted as mating partners both in the staged mating trials and in the natural population. Females appeared not to express any kind of active or passive mate choice (rejection); in only one out of 62 trials did a female approach a male herself rather than being approached by the male(s). There was no discrimination against any male category regardless of size or color within a female's receptive period and the manipulation of male head color in the natural population did not result in spatial re-distribution of females. Thus, a female appears to mate unselectively within her receptive period. Rejection behaviors were used only outside of the receptive period to communicate, to all males, that the female is not receptive.     

Different recovery of a skilled movement after destruction of the caudate nucleus in rats with right- or left-forelimb preference]

Recovery of the motor skill of taking a sunflower seed from a tube after the electrolytic destruction of the caudate nucleus was studied in Wistar rats with left- (n = 27) and right-forelimb (n = 22) preference. The reaching performance was divided in 5 stages. The first two stages characterize the emotional condition of an animal, the following three were immediately related with the skilled movement. After preliminary testing, the head of the caudate nucleus contralateral to the preferred limb was electrolytically damaged. After surgery, rats were tested during 20 weeks, and in every test the following indices were measured: percent of rats which perform the movement characteristic for the given stage, stage duration, depth of reaching a flower seed from the tube, time necessary to obtain the best results etc. It was found that at the "emotional" stages, higher percent of the right-handed animals perform the characteristic movements, but they spend more time to complete these stages than the left-handed rats. In rats with the left-limb dominance the recovery of the specialized movement is positively correlated with the time of the recovery onset at all the stages, while there is no such correlation in rats with right-limb dominance. Both groups of animals reach the same depth of the tube in the course of recovery, but the left-handed rats attain these results later and gradually, while the right-handed animals attain the maximal extent of recovery spontaneously and earlier than left-handed ones.     

Metal binding to<Emphasis Type="Italic"> Bacillus subtilis</Emphasis> ferrochelatase and interaction between metal sites

Ferrochelatase, the terminal enzyme in heme biosynthesis, catalyses metal insertion into protoporphyrin IX. The location of the metal binding site with respect to the bound porphyrin substrate and the mode of metal binding are of central importance for understanding the mechanism of porphyrin metallation. In this work we demonstrate that Zn(2+), which is commonly used as substrate in assays of the ferrochelatase reaction, and Cd(2+), an inhibitor of the enzyme, bind to the invariant amino acids His183 and Glu264 and water molecules, all located within the porphyrin binding cleft. On the other hand, Mg(2+), which has been shown to bind close to the surface at 7 A from His183, was largely absent from its site. Activity measurements demonstrate that Mg(2+) has a stimulatory effect on the enzyme, lowering K(M) for Zn(2+) from 55 to 24 micro M. Changing one of the Mg(2+) binding residues, Glu272, to serine abolishes the effect of Mg(2+). It is proposed that prior to metal insertion the metal may form a sitting-atop (SAT) complex with the invariant His-Glu couple and the porphyrin. Metal binding to the Mg(2+) site may stimulate metal release from the protein ligands and its insertion into the porphyrin.     

Olfactory metacognition

The current paper focuses on the subjective knowledge people have about their ability to name odors. Previous investigations of such metacognitive aspects of olfactory cognition are very scarce and have yielded results that need further scrutiny. In two experiments, we investigated three metamemory judgments about odor identity. As opposed to previous findings, participants' feeling of knowing judgments about odor identity predicted later recognition. Participants were also accurate but highly overconfident in their retrospective confidence in odor identification. A strong and imminent feeling of being able to name an odor, a so-called 'tip of the nose' experience, was found to predict later recall, but was otherwise poorly related to any partial activation of the odor name or other information associated with the odor. This makes it different from the commonly investigated 'tip of the tongue' phenomenon. The current study shows that olfactory metamemory is related to actual knowledge, a finding that is in line with what has been observed for other modalities.