Responses of reptiles to fire in transition zones are mediated by bioregion affinity of species

Fire has impact on reptile communities with marked shifts in community composition between burnt and unburnt areas. These shifts are often related to the preference of reptile species throughout early or late post-fire successional habitats. Areas located in transition zones between bioregions harbor complex reptile communities with a mixture of biogeographic affinities. In these biogeographic crossroads, since fire simplifies the habitat structure, we expected simpler (lower alpha diversity) and more similar (lower beta diversity) reptile communities within burnt than within unburnt localities. We have tested this hypothesis in a transition zone between the Atlantic and Mediterranean bioregions in northern Portugal. Reptiles were surveyed in five localities (8 times per locality) along fire edges in which each locality was composed of one burnt and one unburnt transect. In total, 588 reptiles from 10 species were recorded. Unburnt transects had higher alpha and beta diversity and higher relative abundance of non-Mediterranean individuals than did burnt transects. A redundancy analysis also showed contrasting responses of Mediterranean and non-Mediterranean species, the former increasing and the latter decreasing after fire. Our study demonstrates that fire reduced the complexity of the reptile community, with benefits towards Mediterranean species due to its environmental preferences and long evolutionary association to fire. In biogeographic crossroads such as the study area, the retention of long unburnt vegetation is expected to maintain more diverse reptile communities.     

Ancient DNA reveals differences in behaviour and sociality between brown bears and extinct cave bears

Ancient DNA studies have revolutionized the study of extinct species and populations, providing insights on phylogeny, phylogeography, admixture and demographic history. However, inferences on behaviour and sociality have been far less frequent. Here, we investigate the complete mitochondrial genomes of extinct Late Pleistocene cave bears and middle Holocene brown bears that each inhabited multiple geographically proximate caves in northern Spain. In cave bears, we find that, although most caves were occupied simultaneously, each cave almost exclusively contains a unique lineage of closely related haplotypes. This remarkable pattern suggests extreme fidelity to their birth site in cave bears, best described as homing behaviour, and that cave bears formed stable maternal social groups at least for hibernation. In contrast, brown bears do not show any strong association of mitochondrial lineage and cave, suggesting that these two closely related species differed in aspects of their behaviour and sociality. This difference is likely to have contributed to cave bear extinction, which occurred at a time in which competition for caves between bears and humans was likely intense and the ability to rapidly colonize new hibernation sites would have been crucial for the survival of a species so dependent on caves for hibernation as cave bears. Our study demonstrates the potential of ancient DNA to uncover patterns of behaviour and sociality in ancient species and populations, even those that went extinct many tens of thousands of years ago.     

3-Hydroxy-3-methylglutaric and 3-methylglutaric acids impair redox status and energy production and transfer in rat heart: relevance for the pathophysiology of cardiac dysfunction in 3-hydroxy-3-methylglutaryl-coenzyme A lyase deficiency

3-Hydroxy-3-methylglutaryl-coenzyme A lyase (HL) deficiency is characterized by tissue accumulation of 3-hydroxy-3-methylglutaric (HMG), and 3-methylglutaric (MGA) acids. Affected patients present cardiomyopathy, whose pathomechanisms are not yet established. We investigated the effects of HMG and MGA on energy and redox homeostasis in rat heart using in vivo and in vitro models. In vivo experiments showed that intraperitoneal administration of HMG and MGA decreased the activities of the respiratory chain complex II and creatine kinase (CK), whereas HMG also decreased the activity of complex II–III. Furthermore, HMG and MGA injection increased reactive species production and carbonyl formation, and decreased glutathione concentrations. Regarding the enzymatic antioxidant defenses, HMG and MGA increased glutathione peroxidase (GPx) and glutathione reductase (GR) activities, while only MGA diminished the activities of superoxide dismutase (SOD) and catalase, as well as the protein content of SOD1. Pre-treatment with melatonin (MEL) prevented MGA-induced decrease of CK activity and SOD1 levels. In vitro results demonstrated that HMG and MGA increased reactive species formation, induced lipid peroxidation and decreased glutathione. We also verified that reactive species overproduction and glutathione decrease provoked by HMG and MGA were abrogated by MEL and lipoic acid (LA), while only MEL prevented HMG- and MGA-induced lipoperoxidation. Allopurinol (ALP) also prevented reactive species overproduction caused by both metabolites. Our data provide solid evidence that bioenergetics dysfunction and oxidative stress are induced by HMG and MGA in heart, which may explain the cardiac dysfunction observed in HL deficiency, and also suggest that antioxidant supplementation could be considered as adjuvant therapy for affected patients.     

Hybrid Input‐Output Life Cycle Assessment of First‐ and Second‐Generation Ethanol Production Technologies in Brazil

A hybrid approach combining life cycle assessment and input‐output analysis was used to demonstrate the economic and environmental benefits of current and future improvements in agricultural and industrial technologies for ethanol production in Brazilian biorefineries. In this article, three main scenarios were evaluated: first‐generation ethanol production with the average current technology; the improved current technology; and the integration of improved first‐ and second‐generation ethanol production. For the improved first‐generation scenario, a US$1 million increase in ethanol demand can give rise to US$2.5 million of total economic activity in the Brazilian economy when direct and indirect purchases of inputs are considered. This value is slightly higher than the economic activity (US$1.8 million) for an energy equivalent amount of gasoline. The integration of first‐ and second‐generation technologies significantly reduces the total greenhouse gas emissions of ethanol production: 14.6 versus 86.4 grams of carbon dioxide equivalent per megajoule (g CO₂‐eq/MJ) for gasoline. Moreover, emissions of ethanol can be negative (–10.5 g CO₂‐eq/MJ) when the system boundary is expanded to account for surplus bioelectricity by displacement of natural gas thermal electricity generation considering electricity produced in first‐generation optimized biorefineries.     

Self-assembly and structural characterization of Echinococcus granulosus antigen B recombinant subunit oligomers

Echinococcus granulosus antigen B is an oligomeric protein of 120-160 kDa composed by 8-kDa (AgB8) subunits. Here, we demonstrated that the AgB8 recombinant subunits AgB8/1, AgB8/2 and AgB8/3 are able to self-associate into high order homo-oligomers, showing similar properties to that of parasite-produced AgB, making them valuable tools to study AgB structure. Dynamic light scattering, size exclusion chromatography and cross-linking assays revealed approximately 120- to 160-kDa recombinant oligomers, with a tendency to form populations with different aggregation states. Recombinant oligomers showed helical circular dichroism spectra and thermostability similar to those of purified AgB. Cross-linking and limited proteolysis experiments indicated different degrees of stability and compactness between the recombinant oligomers, with the AgB8/3 one showing a more stable and compact structure. We have also built AgB8 subunit structural models in order to predict the surfaces possibly involved in electrostatic and hydrophobic interactions during oligomerization.     

Interaction of influenza virus NS1 protein and the human homologue of Staufen in vivo and in vitro.

A screening for human proteins capable of interacting with influenza virus NS1 has been carried out using the two-hybrid genetic trap in yeast. A cDNA corresponding to the human homologue of Drosophila melanogaster Staufen protein (hStaufen) was isolated that fulfilled all genetic controls of the two-hybrid protocol. Using a hStaufen cDNA isolated from a lambda human library, the interaction of hStaufen and NS1 proteins was characterised in vivo and in vitro. Co-transfection of NS1 cDNA and a partial cDNA of hStaufen led to the relocalisation of recombinant hStaufen protein from its normal accumulation site in the cytoplasm to the nuclear location of NS1 protein. NS1 and hStaufen proteins could be co-immunoprecipitated from extracts of co-transfected cells and from mixtures of extracts containing either protein, as well as from extracts of influenza virus-infected cells. Furthermore, both proteins co-localised in the ribosomal and polysomal fractions of influenza virus-infected cells. The interaction was also detected in pull-down experiments using a resin containing purified hStaufen and NS1 protein translated in vitro. Deletion mapping of the NS1 gene indicated that a mutant protein containing the N-terminal 81 amino acids is unable to interact with hStaufen, in spite of retaining full RNA-binding capacity. These results are discussed in relation to the possible mechanisms of action of hStaufen and its relevance for influenza virus infection.     

Reproductive biology of the migratory freshwater fish Salminus brasiliensis (Cuvier, 1816) in the Cuiabá River basin,Brazil

This study provides information on the reproductive biology of the dorado Salminus brasiliensis from the Cuiabá River basin, through determinating life history trajectories (length at first maturity, fecundity and spawning type) and the reproductive period, thus establishing the relationships between biotic factors and rainfall and river levels that might act as potential triggers for maturation and spawning. Salminus brasiliensis is a migratory species of great commercial and ecological importance. Individuals were collected monthly from August 2013 to July 2014 in the Cuiabá River. Analyses were performed based on biometric data and the gonads. Females attained greater lengths than males in the Cuiabá River basin, and with a significant difference in the sex ratio in favor of females. Peak reproductive activity occurred in November and December and was related to rainfall. Reproduction was seasonal, with spawning and reproductive potential correlating positively with the length and mass of the gonads of mature females. Average length at first maturity for females was estimated at 55 cm. A regular (annual) monitoring programme of essential biological variables to support a trend analysis over years (not just a snapshot study, as this one) is strongly recommended in order to give advice for the proper fishing policies in the region, as without regular basic data on the population dynamics, management is not possible.