Molecular analysis of the diversity of terrestrial planarians (Platyhelminthes, Tricladida, Continenticola) in the Iberian Peninsula

This work is a prospective study to estimate the potential species diversity of terrestrial planarians in the Iberian Peninsula. Live specimens were collected from several Iberian localities and assigned to different morphotypes on the basis of their external morphological characteristics. From the same specimens, sequences from the mitochondrial Cytochrome Oxidasa subunit I (COI) and from the nuclear ribosomal gene 18S rRNA were obtained. Sequences from GenBank of the families Dendrocoelidae, Planariidae, Bipaliidae, Geoplanidae and Rhynchodemidae have been used as outgroups in the phylogenetic analysis. The results showed that terrestrial planarians have a wide distribution in the Peninsula, with all individuals found belonging to the Rhynchodemidae family. Morphological observations indicated the presence of 10 morphospecies confirmed by the molecular analyses. At the same time, COI sequences were successfully used as a molecular marker for species identification in the barcoding mode, which is of great use in groups like this with few external morphological characteristics. The combined data strongly suggest the presence of at least 15 species in the Iberian Peninsula, a number that nearly doubles previous estimates, indicating that terrestrial planarians are more diverse than expected in the region and, as proposed, may be a good biodiversity indicator and model for biogeographical studies.     

A cluster of three genes (dapA, orf2, and dapB) of Brevibacterium lactofermentum encodes dihydrodipicolinate synthase, dihydrodipicolinate reductase, and a third polypeptide of unknown function.

The dapA and dapB genes, encoding, respectively, dihydrodipicolinate synthase and dihydrodipicolinate reductase, the two first enzymes of the lysine branch of the aspartic amino acid family, were cloned from the DNA of the amino acid-producing bacterium Brevibacterium lactofermentum. The two genes were clustered in a 3.5-kb Sau3AI-BamHI fragment but were separated by an open reading frame of 750 nucleotides. The protein encoded by this open reading frame had little similarity to any protein in the data banks, and its function remains unknown. The three genes were translated in Escherichia coli, giving the corresponding polypeptides.     

Analysis of core genes supports the reclassification of strains Agrobacterium radiobacter K84 and Agrobacterium tumefaciens AKE10 into the species Rhizobium rhizogenes

Some strains of the former genus Agrobacterium have high biotechnological interest and are currently misclassified. Consequently, in this study, the taxonomic status of the non-pathogenic strain Agrobacterium radiobacter K84, used in biological control, and the tumourigenic strain Agrobacterium tumefaciens AKE10, able to regenerate tobacco transgenic plants, was revised. The phylogenetic analysis of the chromosomal genes rrs, atpD and recA showed that they should be reclassified into Rhizobium rhizogenes. The analysis of virulence genes located in the Ti plasmid (pTi) outside T-DNA showed a common phylogenetic origin among strains AKE10, R. rhizogenes 163C and A. tumefaciens (currently R. radiobacter) C58. However, the genes located inside the T-DNA, mainly the 6b gene, of strain AKE10 were phylogenetically close to those of strain 163C but divergent from those of strain C58. Furthermore, the T-DNA of tumourigenic strains from R. rhizogenes conferred on them the ability to regenerate tumour tissue resembling fasciation in tobacco plants. These results showed the existence of a highly mosaic genetic organization in tumourigenic strains of the genus Rhizobium and provided evidence of the involvement of T-DNA from tumourigenic strains of R. rhizogenes in fasciation of Nicotiana leaves. The data further suggested that pathogenic strains of Rhizobium could be good models to analyse bacterial evolution.     

Weak migratory connectivity,loop migration and multiple non-breeding site use in British breeding Whinchats Saxicola rubetra

Determining the links between breeding populations and the pressures, threats and conditions they experience presents a challenge for the conservation of migratory birds which can use multiple sites separated by hundreds to thousands of kilometres. Furthermore, migratory connectivity – the connections made by migrating individuals between networks of breeding and non-breeding sites – has important implications for population dynamics. The Whinchat Saxicola rubetra is declining across its range, and tracking data from a single African non-breeding site implies high migratory spread. We used geolocators to describe the migration routes and non-breeding areas of 20 Whinchats from three British breeding populations. As expected, migratory spread was high, with birds from the three populations overlapping across a wide area of West Africa. On average, in non-breeding areas, British breeding Whinchats were located 652 km apart from one another, with some likely to share non-breeding areas with individuals from breeding populations as far east as Russia. Four males made a direct non-breeding season movement to a second, more westerly, non-breeding location in January. Autumn migration was through Iberia and around the western edge of the Sahara Desert, whereas spring migration was more direct, indicating an anticlockwise loop migration. Weak migratory connectivity implies that Whinchat populations are somewhat buffered against local changes in non-breeding conditions. If non-breeding season processes have played a role in the species’ decline, then large-scale drivers are likely to be the cause, although processes operating on migration, or interactions between breeding and non-breeding processes, cannot be ruled out.     

Influence of micronization (fine grinding) of soya bean meal and full-fat soya bean on the ileal digestibility of amino acids for broilers

A trial was conducted to test the effect of fine grinding (micronization) of soya bean meal (SBM) and full-fat soya bean (FFSB) on coefficient of ileal apparent digestibility (CIAD) and coefficient of ileal true digestibility (CITD) of amino acids in 23-day-old broilers. A completely randomized block design with four treatments arranged factorially (SBM and FFSB; micronized and ground) and six replicates (eight broilers per treatment) was used. Mean particle size (MPS) was 47 and 41 μm for micronized SBM and FFSB and 881 and 778 μm for ground SBM and FFSB, respectively. The four diets were based on maize starch and sucrose with the soya product tested as the sole source of dietary crude protein (CP, 200 g/kg). In addition, a nitrogen-free diet was formulated to estimate the basal ileal endogenous losses of the amino acids. Broilers were fed a commercial pelleted maize-SBM diet from 1 to 19 days of age and, then, their respective experimental diets in mash form from 20 to 23 days of age. Broilers fed SBM had higher CIAD of organic matter, CP, arginine, leucine, methionine and valine (P<0.05) and tended to have higher CIAD of threonine (P<0.10) than broilers fed FFSB. In addition, broilers fed SBM had higher CITD of CP (P<0.05), leucine, methionine and valine (P<0.01) than broilers fed FFSB. Particle size did not affect the ileal digestibility of CP or of any of the essential amino acids. It is concluded that broilers fed soya bean meal had higher ileal digestibility of amino acids than broilers fed full-fat soya bean and that fine grinding of the soya products did not affect amino acid digestibility.     

Heterologous expression of nifA or nodD genes improves chickpea-Mesorhizobium symbiotic performance

Plant and Soil - The aim of this study was to investigate whether the overexpression of NifA and NodD regulators contribute to the symbiotic improvement of chickpea mesorhizobia. The native strains...     

The tragedy of the commons: unsustainable population structure of Iberian red deer in hunting estates

Hunting can influence population structure with consequences in ecological and evolutionary processes. Populations of Iberian red deer (Cervus elaphus hispanicus) in Spain occur under two different management regimes: fenced and unfenced (open) estates. We compared census data, hunting bags and data from hunted individuals between both types of estates. Harvest on stags was moderate in fenced estates but strong in open ones, probably due to the competition between neighbouring landowners over the same deer populations. On the contrary, female culling was low in open estates compared to fenced ones. As a result, populations in open estates have mostly young males and strongly female-biased sex ratios. Female-biased population structure in open estates did not result in higher number of males being harvested per year compared with fenced estates, probably due to negative effects on development, survival and reproduction, and harvested males were younger, and hence, with smaller antlers. There is published evidence for undesirable effects of biased population sex ratio and age structure in these red deer populations. Our results indicate that this type of management may be unsustainable and recommend that harvest on males in open estates should be reduced and that on females increased, in order to maintain a more balanced population structure that may allow sustainable population dynamics and the operation of natural evolutionary processes.